17-33332726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33332726
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33332726
    reference: chr 17
allele count: 1
allele frequency: 8.417933565668301e-6
allele num: 118794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000415412
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000415412.1:n.452T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000578488
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000578488.1:n.620T>C
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7183
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22987
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9422
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-33332727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33332727
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33332727
    reference: chr 17
allele count: 36
allele frequency: 3.031630006400108e-4
allele num: 118748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000415412
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000415412.1:n.453G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000578488
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000578488.1:n.621G>A
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16483
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7218
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.061120543293718e-4
  allele num: 9424
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

17-33332741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33332741
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33332741
    reference: chr 17
allele count: 11
allele frequency: 9.271746459878624e-5
allele num: 118640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000415412
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000415412.1:n.467C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000578488
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000578488.1:n.635C>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15135
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16238
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7234
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
  type: Population
  allele count: 1
  allele frequency: 1.062022090059473e-4
  allele num: 9416
  num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

17-33332742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33332742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33332742
    reference: chr 17
allele count: 9
allele frequency: 7.585207160435559e-5
allele num: 118652
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000578488
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000578488.1:n.636G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000415412
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000415412.1:n.468G>A
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16248
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7246
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 7
  allele frequency: 1.068865475645137e-4
  allele num: 65490
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-33332744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33332744
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33332744
    reference: chr 17
allele count: 1
allele frequency: 8.426871608184177e-6
allele num: 118668
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000578488
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000578488.1:n.638G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000415412
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000415412.1:n.470G>A
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10384
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7252
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21426
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-33332747-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33332747
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33332747
    reference: chr 17
allele count: 2
allele frequency: 1.684636118598383e-5
allele num: 118720
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000578488
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000578488.1:n.641A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224113
  ensembl transcript: ENST00000415412
  gene symbol: RP5-837J1.2
  hgvsc: ENST00000415412.1:n.473A>G
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7260
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-33338938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338938
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338938
    reference: chr 17
allele count: 1
allele frequency: 8.566778034781118e-6
allele num: 116730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*49G>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*49G>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS

17-33338940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338940
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338940
    reference: chr 17
allele count: 1
allele frequency: 8.560031500915923e-6
allele num: 116822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*47G>A
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-33338954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338954
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338954
    reference: chr 17
allele count: 1
allele frequency: 8.527766407422568e-6
allele num: 117264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*33G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*33G>A
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/17-33338975-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338975
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338975
    reference: chr 17
allele count: 1
allele frequency: 8.421903687109433e-6
allele num: 118738
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*12G>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*12G>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-33338975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338975
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338975
    reference: chr 17
allele count: 1
allele frequency: 8.421903687109433e-6
allele num: 118738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*12G>A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*12G>A
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-33338976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338976
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338976
    reference: chr 17
allele count: 16
allele frequency: 1.344379652813955e-4
allele num: 119014
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*11C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*11C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12333
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

17-33338980-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338980
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338980
    reference: chr 17
allele count: 1
allele frequency: 8.378296859814337e-6
allele num: 119356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.*7G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.*7G>C
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-33338990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338990
    reference: chr 17
allele count: 3
allele frequency: 2.494387627837366e-5
allele num: 120270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1089C>T
  hgvsp: ENST00000447669.2:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1089C>T
  hgvsp: ENST00000315249.7:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1089C>T
  hgvsp: ENST00000415395.2:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.816C>T
  hgvsp: ENST00000593039.1:c.816C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1089C>T
  hgvsp: ENST00000394597.2:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1065C>T
  hgvsp: ENST00000378516.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1065C>T
  hgvsp: ENST00000413582.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.981C>T
  hgvsp: ENST00000584655.1:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.981C>T
  hgvsp: ENST00000268850.7:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser363Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-33338993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338993
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338993
    reference: chr 17
allele count: 3
allele frequency: 2.491694352159469e-5
allele num: 120400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1086G>A
  hgvsp: ENST00000415395.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1086G>A
  hgvsp: ENST00000447669.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1062G>A
  hgvsp: ENST00000413582.2:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1086G>A
  hgvsp: ENST00000315249.7:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.978G>A
  hgvsp: ENST00000268850.7:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1086G>A
  hgvsp: ENST00000394597.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.813G>A
  hgvsp: ENST00000593039.1:c.813G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.978G>A
  hgvsp: ENST00000584655.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1062G>A
  hgvsp: ENST00000378516.2:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg362Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-33338994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338994
    reference: chr 17
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1061G>A
  hgvsp: ENSP00000408513.2:p.Arg354Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1085G>A
  hgvsp: ENSP00000412322.2:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.977G>A
  hgvsp: ENSP00000268850.7:p.Arg326Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1085G>A
  hgvsp: ENSP00000389832.2:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1061G>A
  hgvsp: ENSP00000367777.2:p.Arg354Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1085G>A
  hgvsp: ENSP00000378096.2:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1085G>A
  hgvsp: ENSP00000326170.7:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.812G>A
  hgvsp: ENSP00000466834.1:p.Arg271Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.977G>A
  hgvsp: ENSP00000463035.1:p.Arg326Gln
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg362Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-33338995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338995
    reference: chr 17
allele count: 3
allele frequency: 2.486325211337643e-5
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1084C>T
  hgvsp: ENSP00000378096.2:p.Arg362Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1084C>T
  hgvsp: ENSP00000326170.7:p.Arg362Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1060C>T
  hgvsp: ENSP00000367777.2:p.Arg354Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.811C>T
  hgvsp: ENSP00000466834.1:p.Arg271Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1084C>T
  hgvsp: ENSP00000389832.2:p.Arg362Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1060C>T
  hgvsp: ENSP00000408513.2:p.Arg354Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.976C>T
  hgvsp: ENSP00000268850.7:p.Arg326Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1084C>T
  hgvsp: ENSP00000412322.2:p.Arg362Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.976C>T
  hgvsp: ENSP00000463035.1:p.Arg326Trp
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg362Trp
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-33338995-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33338995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33338995
    reference: chr 17
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1084C>A
  hgvsp: ENST00000315249.7:c.1084C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1060C>A
  hgvsp: ENST00000413582.2:c.1060C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1060C>A
  hgvsp: ENST00000378516.2:c.1060C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1084C>A
  hgvsp: ENST00000415395.2:c.1084C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1084C>A
  hgvsp: ENST00000447669.2:c.1084C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.811C>A
  hgvsp: ENST00000593039.1:c.811C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1084C>A
  hgvsp: ENST00000394597.2:c.1084C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.976C>A
  hgvsp: ENST00000584655.1:c.976C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.976C>A
  hgvsp: ENST00000268850.7:c.976C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg362Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-33339002-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339002
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339002
    reference: chr 17
allele count: 2
allele frequency: 1.652783287055401e-5
allele num: 121008
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1077T>C
  hgvsp: ENST00000315249.7:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1077T>C
  hgvsp: ENST00000447669.2:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1053T>C
  hgvsp: ENST00000378516.2:c.1053T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1053T>C
  hgvsp: ENST00000413582.2:c.1053T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1077T>C
  hgvsp: ENST00000415395.2:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1077T>C
  hgvsp: ENST00000394597.2:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.969T>C
  hgvsp: ENST00000268850.7:c.969T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.969T>C
  hgvsp: ENST00000584655.1:c.969T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.804T>C
  hgvsp: ENST00000593039.1:c.804T>C(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His359His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

17-33339003-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339003
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339003
    reference: chr 17
allele count: 11
allele frequency: 9.088956092079388e-5
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1076A>G
  hgvsp: ENSP00000378096.2:p.His359Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1052A>G
  hgvsp: ENSP00000408513.2:p.His351Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1076A>G
  hgvsp: ENSP00000389832.2:p.His359Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1052A>G
  hgvsp: ENSP00000367777.2:p.His351Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.968A>G
  hgvsp: ENSP00000463035.1:p.His323Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.968A>G
  hgvsp: ENSP00000268850.7:p.His323Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1076A>G
  hgvsp: ENSP00000326170.7:p.His359Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1076A>G
  hgvsp: ENSP00000412322.2:p.His359Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.803A>G
  hgvsp: ENSP00000466834.1:p.His268Arg
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His359Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-33339008-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339008
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339008
    reference: chr 17
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1071T>G
  hgvsp: ENST00000415395.2:c.1071T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1071T>G
  hgvsp: ENST00000394597.2:c.1071T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1047T>G
  hgvsp: ENST00000413582.2:c.1047T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1047T>G
  hgvsp: ENST00000378516.2:c.1047T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1071T>G
  hgvsp: ENST00000315249.7:c.1071T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.798T>G
  hgvsp: ENST00000593039.1:c.798T>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1071T>G
  hgvsp: ENST00000447669.2:c.1071T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.963T>G
  hgvsp: ENST00000268850.7:c.963T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.963T>G
  hgvsp: ENST00000584655.1:c.963T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala357Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-33339014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339014
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339014
    reference: chr 17
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1065C>T
  hgvsp: ENST00000447669.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1065C>T
  hgvsp: ENST00000315249.7:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1065C>T
  hgvsp: ENST00000394597.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1041C>T
  hgvsp: ENST00000378516.2:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1065C>T
  hgvsp: ENST00000415395.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.792C>T
  hgvsp: ENST00000593039.1:c.792C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1041C>T
  hgvsp: ENST00000413582.2:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.957C>T
  hgvsp: ENST00000268850.7:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.957C>T
  hgvsp: ENST00000584655.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile355Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-33339021-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339021
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339022
    reference: chr 17
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1057dupT
  hgvsp: ENSP00000412322.2:p.Tyr353LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1057dupT
  hgvsp: ENSP00000326170.7:p.Tyr353LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1057dupT
  hgvsp: ENSP00000378096.2:p.Tyr353LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.949dupT
  hgvsp: ENSP00000268850.7:p.Tyr317LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1057dupT
  hgvsp: ENSP00000389832.2:p.Tyr353LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1033dupT
  hgvsp: ENSP00000367777.2:p.Tyr345LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1033dupT
  hgvsp: ENSP00000408513.2:p.Tyr345LeufsTer?
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.784dupT
  hgvsp: ENSP00000466834.1:p.Tyr262LeufsTer84
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.423dupT
  hgvsp: ENSP00000462656.1:p.Ter142Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.949dupT
  hgvsp: ENSP00000463035.1:p.Tyr317LeufsTer84
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr353LeufsTer84
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-33339026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339026
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339026
    reference: chr 17
allele count: 2
allele frequency: 1.64883180266781e-5
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1053G>A
  hgvsp: ENST00000315249.7:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.945G>A
  hgvsp: ENST00000584655.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.419G>A
  hgvsp: ENST00000581039.1:c.419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1029G>A
  hgvsp: ENST00000378516.2:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1053G>A
  hgvsp: ENST00000394597.2:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.780G>A
  hgvsp: ENST00000593039.1:c.780G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1053G>A
  hgvsp: ENST00000415395.2:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1029G>A
  hgvsp: ENST00000413582.2:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1053G>A
  hgvsp: ENST00000447669.2:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.945G>A
  hgvsp: ENST00000268850.7:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8436
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg351Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

17-33339028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339028
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1027C>T
  hgvsp: ENSP00000408513.2:p.Arg343Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.778C>T
  hgvsp: ENSP00000466834.1:p.Arg260Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1027C>T
  hgvsp: ENSP00000367777.2:p.Arg343Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1051C>T
  hgvsp: ENSP00000326170.7:p.Arg351Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1051C>T
  hgvsp: ENSP00000378096.2:p.Arg351Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.943C>T
  hgvsp: ENSP00000268850.7:p.Arg315Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1051C>T
  hgvsp: ENSP00000389832.2:p.Arg351Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1051C>T
  hgvsp: ENSP00000412322.2:p.Arg351Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.943C>T
  hgvsp: ENSP00000463035.1:p.Arg315Trp
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.417C>T
  hgvsp: ENSP00000462656.1:p.Arg140Trp
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg351Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-33339037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339037
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339037
    reference: chr 17
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.408C>T
  hgvsp: ENSP00000462656.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1042C>T
  hgvsp: ENSP00000326170.7:p.Pro348Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1042C>T
  hgvsp: ENSP00000412322.2:p.Pro348Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.934C>T
  hgvsp: ENSP00000463035.1:p.Pro312Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1018C>T
  hgvsp: ENSP00000408513.2:p.Pro340Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1018C>T
  hgvsp: ENSP00000367777.2:p.Pro340Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.769C>T
  hgvsp: ENSP00000466834.1:p.Pro257Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1042C>T
  hgvsp: ENSP00000378096.2:p.Pro348Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1042C>T
  hgvsp: ENSP00000389832.2:p.Pro348Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.934C>T
  hgvsp: ENSP00000268850.7:p.Pro312Ser
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro348Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

17-33339051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339051
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339051
    reference: chr 17
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1004G>A
  hgvsp: ENSP00000408513.2:p.Arg335His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.394G>A
  hgvsp: ENSP00000462656.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1028G>A
  hgvsp: ENSP00000412322.2:p.Arg343His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1004G>A
  hgvsp: ENSP00000367777.2:p.Arg335His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.755G>A
  hgvsp: ENSP00000466834.1:p.Arg252His
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1028G>A
  hgvsp: ENSP00000326170.7:p.Arg343His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1028G>A
  hgvsp: ENSP00000389832.2:p.Arg343His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.920G>A
  hgvsp: ENSP00000268850.7:p.Arg307His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.920G>A
  hgvsp: ENSP00000463035.1:p.Arg307His
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1028G>A
  hgvsp: ENSP00000378096.2:p.Arg343His
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg343His
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

17-33339052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339052
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339052
    reference: chr 17
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.754C>T
  hgvsp: ENSP00000466834.1:p.Arg252Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1003C>T
  hgvsp: ENSP00000408513.2:p.Arg335Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1027C>T
  hgvsp: ENSP00000412322.2:p.Arg343Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.393C>T
  hgvsp: ENSP00000462656.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1003C>T
  hgvsp: ENSP00000367777.2:p.Arg335Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.919C>T
  hgvsp: ENSP00000268850.7:p.Arg307Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1027C>T
  hgvsp: ENSP00000326170.7:p.Arg343Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1027C>T
  hgvsp: ENSP00000389832.2:p.Arg343Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1027C>T
  hgvsp: ENSP00000378096.2:p.Arg343Cys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.919C>T
  hgvsp: ENSP00000463035.1:p.Arg307Cys
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg343Cys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-33339053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339053
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339053
    reference: chr 17
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1026G>A
  hgvsp: ENST00000415395.2:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.753G>A
  hgvsp: ENST00000593039.1:c.753G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1026G>A
  hgvsp: ENST00000394597.2:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.918G>A
  hgvsp: ENST00000584655.1:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.392G>A
  hgvsp: ENST00000581039.1:c.392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1026G>A
  hgvsp: ENST00000315249.7:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.918G>A
  hgvsp: ENST00000268850.7:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1026G>A
  hgvsp: ENST00000447669.2:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.1002G>A
  hgvsp: ENST00000413582.2:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.1002G>A
  hgvsp: ENST00000378516.2:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys342Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-33339062-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339062
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339062
    reference: chr 17
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1017G>C
  hgvsp: ENSP00000326170.7:p.Lys339Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1017G>C
  hgvsp: ENSP00000378096.2:p.Lys339Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.993G>C
  hgvsp: ENSP00000408513.2:p.Lys331Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1017G>C
  hgvsp: ENSP00000389832.2:p.Lys339Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.993G>C
  hgvsp: ENSP00000367777.2:p.Lys331Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.909G>C
  hgvsp: ENSP00000268850.7:p.Lys303Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.383G>C
  hgvsp: ENSP00000462656.1:p.Lys128Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.744G>C
  hgvsp: ENSP00000466834.1:p.Lys248Asn
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.909G>C
  hgvsp: ENSP00000463035.1:p.Lys303Asn
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1017G>C
  hgvsp: ENSP00000412322.2:p.Lys339Asn
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys339Asn
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-33339074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339074
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339074
    reference: chr 17
allele count: 7
allele frequency: 5.767868031179447e-5
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1005A>G
  hgvsp: ENST00000447669.2:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.897A>G
  hgvsp: ENST00000268850.7:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.981A>G
  hgvsp: ENST00000378516.2:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1005A>G
  hgvsp: ENST00000315249.7:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.557A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.981A>G
  hgvsp: ENST00000413582.2:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.897A>G
  hgvsp: ENST00000584655.1:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.732A>G
  hgvsp: ENST00000593039.1:c.732A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.371A>G
  hgvsp: ENST00000581039.1:c.371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1005A>G
  hgvsp: ENST00000415395.2:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1005A>G
  hgvsp: ENST00000394597.2:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val335Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-33339076-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339076
    reference: chr 17
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.895G>T
  hgvsp: ENSP00000463035.1:p.Val299Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.369G>T
  hgvsp: ENSP00000462656.1:p.Val124Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.1003G>T
  hgvsp: ENSP00000412322.2:p.Val335Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.1003G>T
  hgvsp: ENSP00000378096.2:p.Val335Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.730G>T
  hgvsp: ENSP00000466834.1:p.Val244Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.979G>T
  hgvsp: ENSP00000367777.2:p.Val327Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.895G>T
  hgvsp: ENSP00000268850.7:p.Val299Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.979G>T
  hgvsp: ENSP00000408513.2:p.Val327Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.1003G>T
  hgvsp: ENSP00000389832.2:p.Val335Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.1003G>T
  hgvsp: ENSP00000326170.7:p.Val335Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.555G>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val335Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-33339100-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339100
    reference: chr 17
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.955G>C
  hgvsp: ENSP00000408513.2:p.Val319Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.871G>C
  hgvsp: ENSP00000463035.1:p.Val291Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.531G>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.345G>C
  hgvsp: ENSP00000462656.1:p.Val116Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.706G>C
  hgvsp: ENSP00000466834.1:p.Val236Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.979G>C
  hgvsp: ENSP00000378096.2:p.Val327Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.955G>C
  hgvsp: ENSP00000367777.2:p.Val319Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.979G>C
  hgvsp: ENSP00000389832.2:p.Val327Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.979G>C
  hgvsp: ENSP00000412322.2:p.Val327Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.979G>C
  hgvsp: ENSP00000326170.7:p.Val327Leu
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.871G>C
  hgvsp: ENSP00000268850.7:p.Val291Leu
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val327Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-33339103-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339103
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339103
    reference: chr 17
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.976T>C
  hgvsp: ENSP00000389832.2:p.Cys326Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.976T>C
  hgvsp: ENSP00000326170.7:p.Cys326Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.976T>C
  hgvsp: ENSP00000378096.2:p.Cys326Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.342T>C
  hgvsp: ENSP00000462656.1:p.Cys115Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.952T>C
  hgvsp: ENSP00000367777.2:p.Cys318Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.528T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.976T>C
  hgvsp: ENSP00000412322.2:p.Cys326Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.703T>C
  hgvsp: ENSP00000466834.1:p.Cys235Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.868T>C
  hgvsp: ENSP00000268850.7:p.Cys290Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.952T>C
  hgvsp: ENSP00000408513.2:p.Cys318Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.868T>C
  hgvsp: ENSP00000463035.1:p.Cys290Arg
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys326Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-33339104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339104
    reference: chr 17
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.867C>T
  hgvsp: ENST00000584655.1:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.341C>T
  hgvsp: ENST00000581039.1:c.341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.867C>T
  hgvsp: ENST00000268850.7:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.975C>T
  hgvsp: ENST00000315249.7:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.975C>T
  hgvsp: ENST00000394597.2:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.975C>T
  hgvsp: ENST00000447669.2:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.951C>T
  hgvsp: ENST00000378516.2:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.975C>T
  hgvsp: ENST00000415395.2:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.702C>T
  hgvsp: ENST00000593039.1:c.702C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.527C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.951C>T
  hgvsp: ENST00000413582.2:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp325Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-33339112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339112
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339112
    reference: chr 17
allele count: 30
allele frequency: 2.47390035129385e-4
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.967C>T
  hgvsp: ENSP00000378096.2:p.Pro323Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.859C>T
  hgvsp: ENSP00000268850.7:p.Pro287Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.967C>T
  hgvsp: ENSP00000389832.2:p.Pro323Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.333C>T
  hgvsp: ENSP00000462656.1:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.943C>T
  hgvsp: ENSP00000408513.2:p.Pro315Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.943C>T
  hgvsp: ENSP00000367777.2:p.Pro315Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.859C>T
  hgvsp: ENSP00000463035.1:p.Pro287Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.967C>T
  hgvsp: ENSP00000326170.7:p.Pro323Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.967C>T
  hgvsp: ENSP00000412322.2:p.Pro323Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.519C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.694C>T
  hgvsp: ENSP00000466834.1:p.Pro232Ser
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30284
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro323Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-33339131-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339131
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339131
    reference: chr 17
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.948T>C
  hgvsp: ENST00000415395.2:c.948T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.924T>C
  hgvsp: ENST00000413582.2:c.924T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.948T>C
  hgvsp: ENST00000394597.2:c.948T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.314T>C
  hgvsp: ENST00000581039.1:c.314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.840T>C
  hgvsp: ENST00000584655.1:c.840T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.924T>C
  hgvsp: ENST00000378516.2:c.924T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.675T>C
  hgvsp: ENST00000593039.1:c.675T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.948T>C
  hgvsp: ENST00000315249.7:c.948T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.840T>C
  hgvsp: ENST00000268850.7:c.840T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.500T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.948T>C
  hgvsp: ENST00000447669.2:c.948T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys316Cys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

17-33339142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339142
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339142
    reference: chr 17
allele count: 21
allele frequency: 1.739879699746475e-4
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.913G>A
  hgvsp: ENSP00000408513.2:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.937G>A
  hgvsp: ENSP00000412322.2:p.Glu313Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.829G>A
  hgvsp: ENSP00000268850.7:p.Glu277Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.664G>A
  hgvsp: ENSP00000466834.1:p.Glu222Lys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.489G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.829G>A
  hgvsp: ENSP00000463035.1:p.Glu277Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.913G>A
  hgvsp: ENSP00000367777.2:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.303G>A
  hgvsp: ENSP00000462656.1:p.Glu102Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.937G>A
  hgvsp: ENSP00000389832.2:p.Glu313Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.937G>A
  hgvsp: ENSP00000378096.2:p.Glu313Lys
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.937G>A
  hgvsp: ENSP00000326170.7:p.Glu313Lys
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13472
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu313Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

17-33339149-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339149
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339149
    reference: chr 17
allele count: 151
allele frequency: 1.255091014878231e-3
allele num: 120310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.822C>T
  hgvsp: ENST00000584655.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.930C>T
  hgvsp: ENST00000315249.7:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.296C>T
  hgvsp: ENST00000581039.1:c.296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.906C>T
  hgvsp: ENST00000413582.2:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.930C>T
  hgvsp: ENST00000415395.2:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.482C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.822C>T
  hgvsp: ENST00000268850.7:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.906C>T
  hgvsp: ENST00000378516.2:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.930C>T
  hgvsp: ENST00000447669.2:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.930C>T
  hgvsp: ENST00000394597.2:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.657C>T
  hgvsp: ENST00000593039.1:c.657C>T(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29622
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Gly310Gly
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-33339157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339157
    reference: chr 17
allele count: 9
allele frequency: 7.527601204416192e-5
allele num: 119560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.814C>T
  hgvsp: ENSP00000268850.7:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.922C>T
  hgvsp: ENSP00000412322.2:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.922C>T
  hgvsp: ENSP00000389832.2:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.898C>T
  hgvsp: ENSP00000367777.2:p.Pro300Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.898C>T
  hgvsp: ENSP00000408513.2:p.Pro300Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.288C>T
  hgvsp: ENSP00000462656.1:p.Pro97Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.814C>T
  hgvsp: ENSP00000463035.1:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.474C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.649C>T
  hgvsp: ENSP00000466834.1:p.Pro217Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.922C>T
  hgvsp: ENSP00000326170.7:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.922C>T
  hgvsp: ENSP00000378096.2:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29044
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro308Ser
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-33339157-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339157
    reference: chr 17
allele count: 1
allele frequency: 8.364001338240215e-6
allele num: 119560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.649C>A
  hgvsp: ENSP00000466834.1:p.Pro217Thr
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.922C>A
  hgvsp: ENSP00000326170.7:p.Pro308Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.474C>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.814C>A
  hgvsp: ENSP00000268850.7:p.Pro272Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.922C>A
  hgvsp: ENSP00000378096.2:p.Pro308Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.922C>A
  hgvsp: ENSP00000412322.2:p.Pro308Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.898C>A
  hgvsp: ENSP00000367777.2:p.Pro300Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.814C>A
  hgvsp: ENSP00000463035.1:p.Pro272Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.288C>A
  hgvsp: ENSP00000462656.1:p.Pro97Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.898C>A
  hgvsp: ENSP00000408513.2:p.Pro300Thr
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.922C>A
  hgvsp: ENSP00000389832.2:p.Pro308Thr
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29044
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro308Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-33339169-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339169
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339169
    reference: chr 17
allele count: 1
allele frequency: 8.502822937215155e-6
allele num: 117608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-1G>T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-1G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-1G>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27237
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
hgvs: c.911-1G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-33339180-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339180
    reference: chr 17
allele count: 2
allele frequency: 1.748710326134476e-5
allele num: 114370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-12G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-12G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-12G>A
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22456
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-33339189-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339188
    reference: chr 17
allele count: 9
allele frequency: 8.23075375413824e-5
allele num: 109346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-22delT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-22delT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-22delT
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15401
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17321
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3862
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: GA
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-33339195-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339195
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339195
    reference: chr 17
allele count: 1
allele frequency: 9.067827348567284e-6
allele num: 110280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-27T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-27T>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

17-33339195-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339195
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339193
    reference: chr 17
allele count: 1
allele frequency: 9.067827348567284e-6
allele num: 110280
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-29_911-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-29_277-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-29_887-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-29_803-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-29_638-28delCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-29_887-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-29_911-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-29_803-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-29_911-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-29_911-28delCT
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-29_463-28delCT
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AAG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-33339205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339205
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339205
    reference: chr 17
allele count: 2
allele frequency: 1.895052019177926e-5
allele num: 105538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-37C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-37C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-33339206-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339206
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339206
    reference: chr 17
allele count: 1
allele frequency: 9.515653249595584e-6
allele num: 105090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-38C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-38C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-38C>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21972
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15648
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

17-33339220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33339220
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33339220
    reference: chr 17
allele count: 1
allele frequency: 1.024527180706104e-5
allele num: 97606
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.911-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.911-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.803-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.911-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.911-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.463-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.277-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.887-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.887-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.803-52A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.638-52A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-33341711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341711
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341711
    reference: chr 17
allele count: 12
allele frequency: 9.886796183696674e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+48T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+48T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1678T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1678T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+48T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1678T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+48T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+48T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1678T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1678T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+48T>C
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

17-33341716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341716
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341716
    reference: chr 17
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1673G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+43G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+43G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+43G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1673G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1673G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1673G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+43G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1673G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+43G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+43G>A
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

17-33341721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341721
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341721
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+38C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1668C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+38C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1668C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+38C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+38C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+38C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+38C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1668C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1668C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1668C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-33341722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341722
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341722
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1667C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1667C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1667C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+37C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1667C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1667C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-33341722-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341722
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341722
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+37C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+37C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+37C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+37C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1667C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+37C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+37C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1667C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1667C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1667C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1667C>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-33341724-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341724
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341724
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1665G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1665G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+35G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1665G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+35G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+35G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+35G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1665G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+35G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+35G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1665G>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-33341729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341729
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341729
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+30C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+30C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1660C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1660C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1660C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+30C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+30C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+30C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+30C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1660C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1660C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-33341742-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341742
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1647G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1647G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1647G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+17G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+17G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+17G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+17G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+17G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1647G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1647G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+17G>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/17-33341748-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341748
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341748
    reference: chr 17
allele count: 3
allele frequency: 2.471454698235381e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+11G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1641G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1641G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1641G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1641G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+11G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+11G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+11G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+11G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+11G>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1641G>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

17-33341750-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341750
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341750
    reference: chr 17
allele count: 4
allele frequency: 3.295327225993541e-5
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+9T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+9T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1639T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1639T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1639T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+9T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+9T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1639T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+9T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1639T>C
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+9T>C
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-33341755-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341755
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341755
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1634T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1634T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276+4T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1634T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910+4T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462+4T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910+4T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910+4T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1634T>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910+4T>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1634T>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.910+4T>G
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-33341759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341759
    reference: chr 17
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1630G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.910G>A
  hgvsp: ENSP00000326170.7:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1630G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1630G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.462G>A
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.910G>A
  hgvsp: ENSP00000389832.2:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.910G>A
  hgvsp: ENSP00000378096.2:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.276G>A
  hgvsp: ENSP00000462656.1:p.Gly93Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1630G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.910G>A
  hgvsp: ENSP00000412322.2:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1630G>A
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly304Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

17-33341761-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341761
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341761
    reference: chr 17
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1628A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.274A>G
  hgvsp: ENSP00000462656.1:p.Asn92Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.908A>G
  hgvsp: ENSP00000326170.7:p.Asn303Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1628A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1628A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.908A>G
  hgvsp: ENSP00000412322.2:p.Asn303Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1628A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.908A>G
  hgvsp: ENSP00000378096.2:p.Asn303Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1628A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.908A>G
  hgvsp: ENSP00000389832.2:p.Asn303Ser
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.460A>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn303Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-33341772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341772
    reference: chr 17
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.897C>T
  hgvsp: ENST00000415395.2:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.449C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1617C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.263C>T
  hgvsp: ENST00000581039.1:c.263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1617C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1617C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.897C>T
  hgvsp: ENST00000394597.2:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1617C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.897C>T
  hgvsp: ENST00000447669.2:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1617C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.897C>T
  hgvsp: ENST00000315249.7:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala299Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-33341780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341780
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341780
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.889A>G
  hgvsp: ENSP00000389832.2:p.Ser297Gly
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1609A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1609A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.889A>G
  hgvsp: ENSP00000326170.7:p.Ser297Gly
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1609A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.255A>G
  hgvsp: ENSP00000462656.1:p.Ser86Gly
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.441A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.889A>G
  hgvsp: ENSP00000412322.2:p.Ser297Gly
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.889A>G
  hgvsp: ENSP00000378096.2:p.Ser297Gly
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1609A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1609A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser297Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

17-33341797-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341797
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341797
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1592C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.887-15C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1592C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.887-15C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1592C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.439-15C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.887-15C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.253-15C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.887-15C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1592C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1592C>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36868
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-33341808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341808
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341808
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1581C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.887-26C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1581C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1581C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1581C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.887-26C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1581C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.253-26C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.887-26C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.439-26C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.887-26C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-33341813-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341813
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341813
    reference: chr 17
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.887-31C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1576C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1576C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.887-31C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1576C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1576C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1576C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.439-31C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.253-31C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.887-31C>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.887-31C>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS

17-33341814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341814
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341814
    reference: chr 17
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1575C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1575C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.887-32C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.439-32C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.253-32C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.887-32C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.887-32C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1575C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1575C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1575C>T
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.887-32C>T
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-33341822-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33341822
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33341822
    reference: chr 17
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267618
  ensembl protein: ENSP00000466834
  ensembl transcript: ENST00000593039
  gene symbol: RAD51L3-RFFL
  hgvsc: ENST00000593039.1:c.637+1567A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000378096
  ensembl transcript: ENST00000394597
  gene symbol: RFFL
  hgvsc: ENST00000394597.2:c.887-40A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000389832
  ensembl transcript: ENST00000447669
  gene symbol: RFFL
  hgvsc: ENST00000447669.2:c.887-40A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000463035
  ensembl transcript: ENST00000584655
  gene symbol: RFFL
  hgvsc: ENST00000584655.1:c.802+1567A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000462656
  ensembl transcript: ENST00000581039
  gene symbol: RFFL
  hgvsc: ENST00000581039.1:c.253-40A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000412322
  ensembl transcript: ENST00000415395
  gene symbol: RFFL
  hgvsc: ENST00000415395.2:c.887-40A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl transcript: ENST00000584541
  gene symbol: RFFL
  hgvsc: ENST00000584541.1:n.439-40A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000367777
  ensembl transcript: ENST00000378516
  gene symbol: RFFL
  hgvsc: ENST00000378516.2:c.886+1567A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000408513
  ensembl transcript: ENST00000413582
  gene symbol: RFFL
  hgvsc: ENST00000413582.2:c.886+1567A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000268850
  ensembl transcript: ENST00000268850
  gene symbol: RFFL
  hgvsc: ENST00000268850.7:c.802+1567A>G
  variant of: http://identifiers.org/hgnc/24821
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092871
  ensembl protein: ENSP00000326170
  ensembl transcript: ENST00000315249
  gene symbol: RFFL
  hgvsc: ENST00000315249.7:c.887-40A>G
  variant of: http://identifiers.org/hgnc/24821
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525134211810639e-5
allele num: 65568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.43e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.793958e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65528
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.088195553371822e-3
allele num: 16282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.7949e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

South Asian
type: Population
allele count: 4
allele frequency: 2.468221646303838e-4
allele num: 16206
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.108362348054486e-5
allele num: 65484
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

FS
type: SiteQuality
SIO_000300: 4.096e0

DP
type: SiteQuality
SIO_000300: 1.795646e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 1.404e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.522533495736906e-4
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.23e-1

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

FS
type: SiteQuality
SIO_000300: 4.626e0

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 1.796363e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.24e0

FS
type: SiteQuality
SIO_000300: 3.729e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

DP
type: SiteQuality
SIO_000300: 1.796716e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.367e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052503052503053e-5
allele num: 65520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.02e-2

QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 1.797732e6

GenotypeQuality
all individuals: 1093
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.478312892611427e-5
allele num: 13372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 1.6452e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.191e0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.450454477723141e-5
allele num: 13422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.537e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

DP
type: SiteQuality
SIO_000300: 1.6458e6

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.914e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
all individuals: 8045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-5
allele num: 65520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.656732e6

VQSLOD
type: SiteQuality
SIO_000300: -3.242e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
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GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.683451e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 1.206e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.116e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 1.206e0

QD
type: SiteQuality
SIO_000300: 1.116e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.683451e6

GenotypeQuality
all individuals: 340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 16

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8184
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 9.353287012292892e-4
allele num: 14968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515564851019975e-5
allele num: 65982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.687052e6

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513134003147319e-5
allele num: 66088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.692469e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 9.26e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.25e1
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GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 614
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593809441466367e-4
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.704371e6

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.115e0

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 525
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 429
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886836027713626e-4
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.374e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.768e0

DP
type: SiteQuality
SIO_000300: 1.706958e6

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 3.846e0

DP
type: SiteQuality
SIO_000300: 1.708736e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 405
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GenotypeQuality
all individuals: 411
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2105
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GenotypeQuality
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GenotypeQuality
all individuals: 2211
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2150
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.227425582264292e-5
allele num: 16058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008423586040914e-5
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.223e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.710624e6

QD
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SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: 5.84e-1

MQRankSum
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QD
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SIO_000300: 1.222e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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BaseQRankSum
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SIO_000300: -9.56e-1

MQ
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SIO_000300: 5.943e1

ClippingRankSum
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SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 2.755e0

ReadPosRankSum
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SIO_000300: 9.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
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allele count: 10
allele frequency: 9.62278675904542e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
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SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.753e0

MQRankSum
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SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.715128e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 1.442e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.716933e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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MQRankSum
type: SiteQuality
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QD
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DP
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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allele num: 8652
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.06134076857801e-5
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
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East Asian
type: Population
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allele num: 8652
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African
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.720008e6

VQSLOD
type: SiteQuality
SIO_000300: -9.069e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.145e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8448
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.674e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -6.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 1.720154e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.565e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.33e0

VQSLOD
type: SiteQuality
SIO_000300: -2.209e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

DP
type: SiteQuality
SIO_000300: 1.720394e6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

DP
type: SiteQuality
SIO_000300: 1.720135e6

FS
type: SiteQuality
SIO_000300: 1.094e0

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.016e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.653e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -2.364e0

QD
type: SiteQuality
SIO_000300: 1.36e1

DP
type: SiteQuality
SIO_000300: 1.71991e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 423
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 1.720081e6

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeDepth
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bin: 7.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
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allele count: 6
allele frequency: 5.76923076923077e-4
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

QD
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.719771e6

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
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MQRankSum
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DP
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8375
bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ReadPosRankSum
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SIO_000300: 1.37e0

FS
type: SiteQuality
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MQ
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SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.977e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.717483e6

QD
type: SiteQuality
SIO_000300: 1.003e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 1.717102e6

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

ReadPosRankSum
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SIO_000300: 6.99e-1

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.99e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.008e0

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
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SIO_000300: -3.26e-1

ClippingRankSum
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QD
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.716927e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2172
bin: 9.75e1
variant carriers: 30

Latino
type: Population
allele count: 21
allele frequency: 1.816294758692268e-3
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000780101413184e-5
allele num: 66658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.415011037527594e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 1.142e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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SIO_000300: 1.246e1

ReadPosRankSum
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SIO_000300: 5.73e-1

BaseQRankSum
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SIO_000300: -1.942e0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.71626e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

FS
type: SiteQuality
SIO_000300: 7.03e-1

VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 1.709883e6

MQRankSum
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SIO_000300: -3.3e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 1.22955858846674e-3
allele num: 16266
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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Other
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allele num: 898
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European (Non-Finnish)
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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MQRankSum
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GenotypeDepth
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1940
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509069507741527e-5
allele num: 66266
num of homozygotes: 0

Latino
type: Population
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allele frequency: 5.238344683080147e-4
allele num: 11454
num of homozygotes: 0

East Asian
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Other
type: Population
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African
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allele count: 142
allele frequency: 1.374104896458293e-2
allele num: 10334
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European (Finnish)
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allele count: 0
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allele num: 6600
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South Asian
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allele frequency: 6.195786864931847e-5
allele num: 16140
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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VQSLOD
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 5.662514156285391e-4
allele num: 15894
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
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SIO_000300: 3.15e-2

VQSLOD
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DP
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SIO_000300: 1.666415e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.592e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.628e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65946
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6578
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Latino
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allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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FS
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 8.2e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.536145503702111e-5
allele num: 65098
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 1.0057e1

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -3.123e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.366120218579235e-4
allele num: 14640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.512e-1

MQRankSum
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SIO_000300: 1.06e0

ClippingRankSum
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SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

DP
type: SiteQuality
SIO_000300: 1.476486e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.777386048854193e-4
allele num: 7942
num of homozygotes: 0

Other
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allele frequency: 1.231527093596059e-3
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.54407434068451e-5
allele num: 61124
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.041883725776203e-4
allele num: 9598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
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SIO_000300: -9.55e-1

DP
type: SiteQuality
SIO_000300: 1.330616e6

VQSLOD
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SIO_000300: -2.984e0

FS
type: SiteQuality
SIO_000300: 1.7407e1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Other
type: Population
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6224
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61546
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African
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allele count: 1
allele frequency: 1.035625517812759e-4
allele num: 9656
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
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SIO_000300: 3.48e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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VQSLOD
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SIO_000300: 1.57e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 61546
num of homozygotes: 0

Other
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.373022565520963e-5
allele num: 59294
num of homozygotes: 0

East Asian
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South Asian
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African
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.692792091275349e-5
allele num: 59074
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12428
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.7e-3

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 6.78e-1

QD
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SIO_000300: 1.532e1

DP
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MQRankSum
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ClippingRankSum
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SIO_000300: -8.96e-1

ReadPosRankSum
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SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.061254077564335e-5
allele num: 11036
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7040
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55372
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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FS
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MQ
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SIO_000300: 5.919e1

ReadPosRankSum
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SIO_000300: 1.4e0

DP
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SIO_000300: 1.009996e6

ClippingRankSum
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SIO_000300: -3.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
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South Asian
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allele count: 12
allele frequency: 7.26832222895215e-4
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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SIO_000300: 5.973e1

ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.456022118541559e-4
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.078e0

ClippingRankSum
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DP
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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African
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European (Non-Finnish)
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allele num: 66718
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European (Finnish)
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Latino
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num of homozygotes: 0

East Asian
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66718
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East Asian
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Other
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South Asian
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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East Asian
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

DP
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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SIO_000300: -1.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.574e0

DP
type: SiteQuality
SIO_000300: 3.40907e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.138e0

FS
type: SiteQuality
SIO_000300: 3.544e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

VQSLOD
type: SiteQuality
SIO_000300: -1.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.409000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -7.366e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 3.409761e6

QD
type: SiteQuality
SIO_000300: 1.07e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.581e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 3.409876e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 3.409857e6

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

FS
type: SiteQuality
SIO_000300: 3.949e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
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SIO_000300: 2.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
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DP
type: SiteQuality
SIO_000300: 3.40982e6

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
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MQRankSum
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
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African
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allele count: 3
allele frequency: 2.884615384615385e-4
allele num: 10400
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DP
type: SiteQuality
SIO_000300: 3.409889e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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VQSLOD
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SIO_000300: 2.01e0

ReadPosRankSum
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SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.195e0

DP
type: SiteQuality
SIO_000300: 3.409794e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.87e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.733e1

MQRankSum
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SIO_000300: -6.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.251e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11566
num of homozygotes: 0

African
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
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SIO_000300: 3.408999e6

VQSLOD
type: SiteQuality
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MQRankSum
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MQ
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SIO_000300: 5.893e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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SIO_000300: 1.514e1

BaseQRankSum
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SIO_000300: -1.727e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

ReadPosRankSum
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SIO_000300: 1.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 8.83e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.923816852635629e-4
allele num: 10396
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.968e1

ReadPosRankSum
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MQRankSum
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QD
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DP
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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Latino
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African
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East Asian
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