17-4647298-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647298
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647298
    reference: chr 17
allele count: 3
allele frequency: 1.381851681252879e-4
allele num: 21710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1378+156A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.114A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1378+156A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1391A>G
  hgvsp: ENSP00000459501.1:p.Asp464Gly
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2053A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1391A>G
  hgvsp: ENSP00000391742.1:p.Asp464Gly
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp464Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-4647308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647308
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1401A>G
  hgvsp: ENST00000433935.1:c.1401A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1401A>G
  hgvsp: ENST00000573751.2:c.1401A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.124A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1378+166A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2063A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1378+166A>G
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr467Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

17-4647310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647310
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2065G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1378+168G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1403G>A
  hgvsp: ENSP00000391742.1:p.Trp468Ter
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1403G>A
  hgvsp: ENSP00000459501.1:p.Trp468Ter
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.126G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1378+168G>A
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp468Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-4647327-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647327
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647327
    reference: chr 17
allele count: 1
allele frequency: 4.572891896835559e-5
allele num: 21868
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1420G>T
  hgvsp: ENSP00000459501.1:p.Asp474Tyr
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1420G>T
  hgvsp: ENSP00000391742.1:p.Asp474Tyr
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.143G>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-158G>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2082G>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-158G>T
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33682
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp474Tyr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

17-4647332-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647332
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647332
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1425C>G
  hgvsp: ENST00000433935.1:c.1425C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1425C>G
  hgvsp: ENST00000573751.2:c.1425C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-153C>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.148C>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-153C>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2087C>G
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30221
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser475Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

17-4647333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647333
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647333
    reference: chr 17
allele count: 2
allele frequency: 9.06043308870164e-5
allele num: 22074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1426C>T
  hgvsp: ENSP00000391742.1:p.Pro476Ser
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.149C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1426C>T
  hgvsp: ENSP00000459501.1:p.Pro476Ser
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2088C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-152C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-152C>T
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro476Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

17-4647340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647340
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-145C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2095C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1433C>T
  hgvsp: ENSP00000391742.1:p.Ala478Val
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-145C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.156C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1433C>T
  hgvsp: ENSP00000459501.1:p.Ala478Val
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32958
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30335
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala478Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

17-4647341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647341
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647341
    reference: chr 17
allele count: 1
allele frequency: 4.460701222232135e-5
allele num: 22418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1434C>T
  hgvsp: ENST00000433935.1:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.157C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1434C>T
  hgvsp: ENST00000573751.2:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-144C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-144C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2096C>T
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala478Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

17-4647342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647342
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647342
    reference: chr 17
allele count: 1
allele frequency: 4.437738528445904e-5
allele num: 22534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-143G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1435G>A
  hgvsp: ENSP00000391742.1:p.Val479Met
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2097G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-143G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.158G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1435G>A
  hgvsp: ENSP00000459501.1:p.Val479Met
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val479Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-4647359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647359
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647359
    reference: chr 17
allele count: 2
allele frequency: 8.20950660865282e-5
allele num: 24362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.175G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1452G>A
  hgvsp: ENST00000433935.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1452G>A
  hgvsp: ENST00000573751.2:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-126G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2114G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-126G>A
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21042
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro484Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-4647360-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647360
    reference: chr 17
allele count: 1
allele frequency: 4.053506282934739e-5
allele num: 24670
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1453C>T
  hgvsp: ENST00000573751.2:c.1453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1453C>T
  hgvsp: ENST00000433935.1:c.1453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-125C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-125C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.176C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2115C>T
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23682
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18832
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu485Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

17-4647365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647365
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647365
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1458C>T
  hgvsp: ENST00000433935.1:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1458C>T
  hgvsp: ENST00000573751.2:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.181C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2120C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-120C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-120C>T
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25513
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr486Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-4647366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647366
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647366
    reference: chr 17
allele count: 2
allele frequency: 7.607455306200075e-5
allele num: 26290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-119G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1459G>A
  hgvsp: ENSP00000459501.1:p.Val487Met
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1459G>A
  hgvsp: ENSP00000391742.1:p.Val487Met
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.182G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2121G>A
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-119G>A
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26379
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val487Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

17-4647373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647373
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647373
    reference: chr 17
allele count: 1
allele frequency: 3.470053438822958e-5
allele num: 28818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2128A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1466A>G
  hgvsp: ENSP00000459501.1:p.Tyr489Cys
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-112A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-112A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.189A>G
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1466A>G
  hgvsp: ENSP00000391742.1:p.Tyr489Cys
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr489Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-4647374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4647374
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4647374
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 29118
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000459501
  ensembl transcript: ENST00000573751
  gene symbol: ZMYND15
  hgvsc: ENST00000573751.2:c.1467C>T
  hgvsp: ENST00000573751.2:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000269289
  ensembl transcript: ENST00000269289
  gene symbol: ZMYND15
  hgvsc: ENST00000269289.6:c.1379-111C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000574829
  gene symbol: ZMYND15
  hgvsc: ENST00000574829.1:n.2129C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141497
  ensembl transcript: ENST00000571782
  gene symbol: ZMYND15
  hgvsc: ENST00000571782.1:n.190C>T
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000391742
  ensembl transcript: ENST00000433935
  gene symbol: ZMYND15
  hgvsc: ENST00000433935.1:c.1467C>T
  hgvsp: ENST00000433935.1:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141497
  ensembl protein: ENSP00000465435
  ensembl transcript: ENST00000592813
  gene symbol: ZMYND15
  hgvsc: ENST00000592813.1:c.1379-111C>T
  variant of: http://identifiers.org/hgnc/20997
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30706
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr489Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

19-1011625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011625
    reference: chr 19
allele count: 1
allele frequency: 7.295010213014298e-5
allele num: 13708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.498C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.143-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.249C>T
  hgvsp: ENST00000593068.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.160-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.449C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1038C>T
  hgvsp: ENST00000333175.5:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1038C>T
  hgvsp: ENST00000356663.3:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000592618
  gene symbol: TMEM259
  hgvsc: ENST00000592618.1:n.16C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.873-14C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29329
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile346Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

19-1011666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011666
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011666
    reference: chr 19
allele count: 2
allele frequency: 1.620745542949757e-4
allele num: 12340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.143-55G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.873-55G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.160-55G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.457G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32933
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1001-4G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-1011677-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011677
    reference: chr 19
allele count: 1
allele frequency: 8.733624454148471e-5
allele num: 11450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+63G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+63G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-15G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.446G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-15G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-15G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-15G>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+63G>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

19-1011678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011678
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 11604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-16C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-16C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+62C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.445C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-16C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+62C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-16C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+62C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33224
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

19-1011683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011683
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011683
    reference: chr 19
allele count: 16
allele frequency: 1.424247819120527e-3
allele num: 11234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+57C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.440C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+57C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+57C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-21C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33605
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29313
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-1011688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011688
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011688
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 10934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.435G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-26G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-26G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-26G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+52G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+52G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-26G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+52G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34642
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-1011689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011689
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011689
    reference: chr 19
allele count: 4
allele frequency: 3.656307129798903e-4
allele num: 10940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+51C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-27C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.434C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-27C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+51C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+51C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-27C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-27C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-1011696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011696
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011696
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 10782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.212-34C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.427C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1001-34C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+44C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+44C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1001-34C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+44C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.412-34C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 35605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum

19-1011706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011706
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011706
    reference: chr 19
allele count: 1
allele frequency: 9.763718023823472e-5
allele num: 10242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+34G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+34G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+34G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+34G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.417G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+34G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+34G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+34G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 35958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4921
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

19-1011707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011707
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011707
    reference: chr 19
allele count: 1
allele frequency: 9.596928982725528e-5
allele num: 10420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+33C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+33C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+33C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.416C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+33C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+33C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+33C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+33C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-1011710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011710
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 10852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+30G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+30G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+30G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+30G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+30G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.413G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+30G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+30G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33915
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-1011711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011711
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011711
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 10858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.412C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+29C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+29C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+29C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+29C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+29C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+29C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+29C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

19-1011713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011713
    reference: chr 19
allele count: 1
allele frequency: 8.997660608241857e-5
allele num: 11114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+27G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+27G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+27G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.410G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+27G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+27G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+27G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+27G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-1011716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011716
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011716
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 11218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+24C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+24C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+24C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+24C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+24C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+24C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.407C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+24C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34053
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

19-1011720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011720
    reference: chr 19
allele count: 1
allele frequency: 8.591065292096221e-5
allele num: 11640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+20A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.403A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+20A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+20A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+20A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+20A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+20A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+20A>G
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

19-1011722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011722
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011722
    reference: chr 19
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+18G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.401G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35635
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-1011723-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011723
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011723
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 11832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+17C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+17C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+17C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+17C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+17C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.400C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+17C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+17C>G
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11910
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-1011725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011725
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 11912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+15G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+15G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+15G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+15G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+15G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.398G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+15G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+15G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12592
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32725
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

19-1011728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011728
    reference: chr 19
allele count: 29
allele frequency: 2.342866375828082e-3
allele num: 12378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+12G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+12G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+12G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+12G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+12G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+12G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.395G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+12G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34322
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32328
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

19-1011729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011729
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011729
    reference: chr 19
allele count: 1
allele frequency: 7.793017456359102e-5
allele num: 12832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.394C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.1000+11C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.1000+11C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.211+11C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.411+11C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.159+11C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.872+11C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.142+11C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-1011741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011741
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011741
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.158C>T
  hgvsp: ENST00000586285.2:c.158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.999C>T
  hgvsp: ENST00000356663.3:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.999C>T
  hgvsp: ENST00000333175.5:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.410C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.210C>T
  hgvsp: ENST00000593068.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.141C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.382C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.871C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18917
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
hgvs: c.999C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

19-1011741-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011741
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011741
    reference: chr 19
allele count: 1
allele frequency: 6.893699158968702e-5
allele num: 14506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.410C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.382C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.141C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.871C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.158C>A
  hgvsp: ENST00000586285.2:c.158C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.210C>A
  hgvsp: ENST00000593068.2:c.210C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.999C>A
  hgvsp: ENST00000356663.3:c.999C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.999C>A
  hgvsp: ENST00000333175.5:c.999C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28794
  bin: 7.5e0
  variant carriers: 0
hgvs: c.999C>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-1011744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011744
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011744
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 15086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.996C>T
  hgvsp: ENST00000333175.5:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.407C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.379C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.207C>T
  hgvsp: ENST00000593068.2:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.996C>T
  hgvsp: ENST00000356663.3:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.155C>T
  hgvsp: ENST00000586285.2:c.155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.868C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.138C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20503
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe332Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

19-1011746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011746
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011746
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 15354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.405T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.136T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.866T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.153T>C
  hgvsp: ENSP00000475219.1:p.Phe52Leu
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.994T>C
  hgvsp: ENSP00000331423.4:p.Phe332Leu
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.377T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.205T>C
  hgvsp: ENSP00000475704.1:p.Phe69Leu
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.994T>C
  hgvsp: ENSP00000349087.2:p.Phe332Leu
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21480
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe332Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

19-1011749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011749
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011749
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 15656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.374G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.991G>A
  hgvsp: ENSP00000349087.2:p.Val331Ile
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.133G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.202G>A
  hgvsp: ENSP00000475704.1:p.Val68Ile
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.863G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.991G>A
  hgvsp: ENSP00000331423.4:p.Val331Ile
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.402G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.150G>A
  hgvsp: ENSP00000475219.1:p.Val51Ile
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22701
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val331Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-1011758-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011758
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 17090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.393C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.124C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.365C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.854C>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.982C>G
  hgvsp: ENSP00000331423.4:p.Gln328Glu
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.982C>G
  hgvsp: ENSP00000349087.2:p.Gln328Glu
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.193C>G
  hgvsp: ENSP00000475704.1:p.Gln65Glu
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.141C>G
  hgvsp: ENSP00000475219.1:p.Gln48Glu
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26089
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln328Glu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-1011771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011771
    reference: chr 19
allele count: 2
allele frequency: 1.011122345803842e-4
allele num: 19780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.380G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.111G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.180G>A
  hgvsp: ENST00000593068.2:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.969G>A
  hgvsp: ENST00000356663.3:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.352G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.128G>A
  hgvsp: ENST00000586285.2:c.128G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.969G>A
  hgvsp: ENST00000333175.5:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.841G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg323Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

19-1011772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011772
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011772
    reference: chr 19
allele count: 1
allele frequency: 4.987531172069826e-5
allele num: 20050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.127G>A
  hgvsp: ENSP00000475219.1:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.968G>A
  hgvsp: ENSP00000349087.2:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.968G>A
  hgvsp: ENSP00000331423.4:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.110G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.840G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.379G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.179G>A
  hgvsp: ENSP00000475704.1:p.Arg60Gln
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.351G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg323Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-1011773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011773
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011773
    reference: chr 19
allele count: 2
allele frequency: 9.77803852547179e-5
allele num: 20454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.378C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.967C>T
  hgvsp: ENSP00000349087.2:p.Arg323Trp
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.178C>T
  hgvsp: ENSP00000475704.1:p.Arg60Trp
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.350C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.967C>T
  hgvsp: ENSP00000331423.4:p.Arg323Trp
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.839C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.126C>T
  hgvsp: ENSP00000475219.1:p.Arg43Trp
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.109C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg323Trp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

19-1011777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011777
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011777
    reference: chr 19
allele count: 1
allele frequency: 4.612971676353907e-5
allele num: 21678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.174G>A
  hgvsp: ENST00000593068.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.105G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.963G>A
  hgvsp: ENST00000356663.3:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.835G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.963G>A
  hgvsp: ENST00000333175.5:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.346G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.122G>A
  hgvsp: ENST00000586285.2:c.122G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.374G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Leu321Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-1011788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011788
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011788
    reference: chr 19
allele count: 1
allele frequency: 4.016709511568123e-5
allele num: 24896
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.952G>A
  hgvsp: ENSP00000349087.2:p.Val318Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.952G>A
  hgvsp: ENSP00000331423.4:p.Val318Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.111G>A
  hgvsp: ENSP00000475219.1:p.Val38Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.94G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.335G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.163G>A
  hgvsp: ENSP00000475704.1:p.Val55Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.824G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.363G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33985
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31272
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val318Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

19-1011789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011789
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011789
    reference: chr 19
allele count: 2
allele frequency: 7.865963973885e-5
allele num: 25426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.110C>T
  hgvsp: ENST00000586285.2:c.110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.334C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.823C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.951C>T
  hgvsp: ENST00000333175.5:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.162C>T
  hgvsp: ENST00000593068.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.362C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.951C>T
  hgvsp: ENST00000356663.3:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.93C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34283
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser317Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-1011795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011795
    reference: chr 19
allele count: 1
allele frequency: 3.59040643400833e-5
allele num: 27852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.87G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.156G>A
  hgvsp: ENST00000593068.2:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.945G>A
  hgvsp: ENST00000356663.3:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.945G>A
  hgvsp: ENST00000333175.5:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.328G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.817G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.104G>A
  hgvsp: ENST00000586285.2:c.104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.356G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
hgvs: c.945G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

19-1011796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011796
    reference: chr 19
allele count: 6
allele frequency: 2.090738030524775e-4
allele num: 28698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.816C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.155C>T
  hgvsp: ENSP00000475704.1:p.Thr52Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.103C>T
  hgvsp: ENSP00000475219.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.327C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.944C>T
  hgvsp: ENSP00000331423.4:p.Thr315Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.944C>T
  hgvsp: ENSP00000349087.2:p.Thr315Met
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.355C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.86C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34978
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr315Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-1011800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011800
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011800
    reference: chr 19
allele count: 2
allele frequency: 6.590220113351786e-5
allele num: 30348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-3C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-3C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35135
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9098
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
hgvs: c.943-3C>T
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-1011801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011801
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011801
    reference: chr 19
allele count: 1
allele frequency: 3.225182222795588e-5
allele num: 31006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-4G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-4G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 3.25e1
  variant carriers: 0
hgvs: c.943-4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-1011808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011808
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011808
    reference: chr 19
allele count: 6
allele frequency: 1.756543123133673e-4
allele num: 34158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-11G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-11G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34756
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-1011809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011809
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011809
    reference: chr 19
allele count: 9
allele frequency: 2.567760342368046e-4
allele num: 35050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-12C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-12C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

19-1011810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011810
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011810
    reference: chr 19
allele count: 17
allele frequency: 4.740129377648896e-4
allele num: 35864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-13G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-13G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34444
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7638
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

19-1011811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011811
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011811
    reference: chr 19
allele count: 3
allele frequency: 8.141996417521577e-5
allele num: 36846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-14C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-14C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34139
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33033
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-1011813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011813
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011813
    reference: chr 19
allele count: 1
allele frequency: 2.555192150449714e-5
allele num: 39136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-16T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-16T>C
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6119
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

19-1011814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011814
    reference: chr 19
allele count: 1
allele frequency: 2.529724260055654e-5
allele num: 39530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-17C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-17C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5842
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

19-1011815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011815
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011815
    reference: chr 19
allele count: 1
allele frequency: 2.49214972835568e-5
allele num: 40126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-18C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-18C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-1011818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011818
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 41332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-21C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-21C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33172
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5664
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

19-1011819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011819
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011819
    reference: chr 19
allele count: 2
allele frequency: 4.785604900459418e-5
allele num: 41792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-22G>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-22G>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

19-1011820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011820
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011820
    reference: chr 19
allele count: 11
allele frequency: 2.582402103483895e-4
allele num: 42596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-23C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-23C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32531
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

19-1011820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011820
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011820
    reference: chr 19
allele count: 1
allele frequency: 2.34763827589445e-5
allele num: 42596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-23C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-23C>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32531
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

19-1011822-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011822
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011822
    reference: chr 19
allele count: 11
allele frequency: 2.435676010805545e-4
allele num: 45162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-25A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-25A>G
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31982
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.75e1
  variant carriers: 12
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

19-1011822-T-TGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011822
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011825
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 45162
alternate allele: TGTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-26_326-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-26_102-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-26_943-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-26_85-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-26_154-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-26_354-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-26_815-25insCAC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-26_943-25insCAC
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31982
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

19-1011823-A-AGGCGCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011830
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 84656
alternate allele: AGGCGCTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-27_326-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-27_943-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-27_85-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-27_943-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-27_154-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-27_815-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-27_354-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-27_102-26insCAGCGCC
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6152
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-1011823-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011823
    reference: chr 19
allele count: 59643
allele frequency: 7.04533642033642e-1
allele num: 84656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-26T>C
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-26T>C
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 2797
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 1048
genotype depth: GenotypeDepth
  all individuals: 16869
  bin: 1.25e1
  variant carriers: 15416
genotype depth: GenotypeDepth
  all individuals: 13130
  bin: 7.5e0
  variant carriers: 8330
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 1043
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 2.25e1
  variant carriers: 6953
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 13994
  bin: 1.75e1
  variant carriers: 13410
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.5e0
  variant carriers: 684
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 1306
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 3.75e1
  variant carriers: 3185
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 1671
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 817
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 3070
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 3.25e1
  variant carriers: 2927
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 7.75e1
  variant carriers: 1108
num of homozygotes: 19752
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-1011827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011827
    reference: chr 19
allele count: 1
allele frequency: 1.220464752977934e-5
allele num: 81936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-30C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-30C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13788
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

19-1011828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011828
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011828
    reference: chr 19
allele count: 11
allele frequency: 1.344086021505376e-4
allele num: 81840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-31C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-31C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12242
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14766
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

19-1011832-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011832
    reference: chr 19
allele count: 1
allele frequency: 1.217759809055262e-5
allele num: 82118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-35A>G
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-35A>G
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14053
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6559
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-1011833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011833
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011833
    reference: chr 19
allele count: 1
allele frequency: 1.216101179618144e-5
allele num: 82230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-36C>T
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-36C>T
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7854
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

19-1011833-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1011833
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 1011833
    reference: chr 19
allele count: 61
allele frequency: 7.41821719567068e-4
allele num: 82230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000591128
  gene symbol: TMEM259
  hgvsc: ENST00000591128.1:n.354-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587644
  gene symbol: TMEM259
  hgvsc: ENST00000587644.2:n.326-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000331423
  ensembl transcript: ENST00000333175
  gene symbol: TMEM259
  hgvsc: ENST00000333175.5:c.943-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000587266
  gene symbol: TMEM259
  hgvsc: ENST00000587266.1:n.85-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475219
  ensembl transcript: ENST00000586285
  gene symbol: TMEM259
  hgvsc: ENST00000586285.2:c.102-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000475704
  ensembl transcript: ENST00000593068
  gene symbol: TMEM259
  hgvsc: ENST00000593068.2:c.154-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl protein: ENSP00000349087
  ensembl transcript: ENST00000356663
  gene symbol: TMEM259
  hgvsc: ENST00000356663.3:c.943-36C>A
  variant of: http://identifiers.org/hgnc/17039
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182087
  ensembl transcript: ENST00000586704
  gene symbol: TMEM259
  hgvsc: ENST00000586704.1:n.815-36C>A
  variant of: http://identifiers.org/hgnc/17039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18260
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7854
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1879
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.25531914893617e-4
allele num: 2350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.088118605136772e-4
allele num: 9578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.839e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

FS
type: SiteQuality
SIO_000300: 9.2816e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

DP
type: SiteQuality
SIO_000300: 4.60687e5

QD
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.763e0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.044e1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.366e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

DP
type: SiteQuality
SIO_000300: 4.5576e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

FS
type: SiteQuality
SIO_000300: 1.7975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 3567
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29093
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.457e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.55365e5

QD
type: SiteQuality
SIO_000300: 6.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.358695652173913e-3
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.239e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.198e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 4.67867e5

VQSLOD
type: SiteQuality
SIO_000300: -2.018e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.112e0

QD
type: SiteQuality
SIO_000300: 1.149e1

DP
type: SiteQuality
SIO_000300: 4.74019e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.428953121204761e-4
allele num: 8234
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

DP
type: SiteQuality
SIO_000300: 4.75535e5

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.209774981853375e-4
allele num: 8266
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 768
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.93974e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.642e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.617e0

VQSLOD
type: SiteQuality
SIO_000300: -2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 546
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.207437816952427e-4
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.152e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.98e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.072e0

DP
type: SiteQuality
SIO_000300: 4.99088e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.692762186115214e-4
allele num: 2708
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 916
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.971828458639871e-5
allele num: 11146
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
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allele count: 0
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allele num: 8470
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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FS
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QD
type: SiteQuality
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 8.80126738250308e-5
allele num: 11362
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European (Finnish)
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allele frequency: 0.0e0
allele num: 264
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Other
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 260
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European (Finnish)
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allele frequency: 0.0e0
allele num: 338
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
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MQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 2932
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.340482573726542e-3
allele num: 746
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 264
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European (Non-Finnish)
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allele count: 1
allele frequency: 8.135372600065082e-5
allele num: 12292
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.13045444268596e-4
allele num: 8846
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 13840
num of homozygotes: 0

Latino
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allele num: 900
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FS
type: SiteQuality
SIO_000300: 1.583e0

DP
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QD
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ClippingRankSum
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MQ
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SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e0

VQSLOD
type: SiteQuality
SIO_000300: -2.834e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.652e0

VQSLOD
type: SiteQuality
SIO_000300: -1.097e0

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.51284e5

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.154639175257732e-3
allele num: 194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.631e-1

QD
type: SiteQuality
SIO_000300: 1.04e1

DP
type: SiteQuality
SIO_000300: 2.51578e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.115264797507788e-4
allele num: 6420
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.809e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

DP
type: SiteQuality
SIO_000300: 2.2086e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.53e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.69434090138936e-4
allele num: 5902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.116e0

DP
type: SiteQuality
SIO_000300: 2.05666e5

QD
type: SiteQuality
SIO_000300: 1.065e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.808e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.0665e5

QD
type: SiteQuality
SIO_000300: 1.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.52e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.0e-2
allele num: 100
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.266891891891892e-2
allele num: 1184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.37e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.03979e5

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.07875e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.57e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 3
allele frequency: 2.555366269165247e-3
allele num: 1174
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5544
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3762
num of homozygotes: 0

Other
type: Population
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allele num: 100
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.43e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6
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Other
type: Population
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allele frequency: 0.0e0
allele num: 100
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1208
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3736
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.39e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.14695e5

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.976284584980237e-4
allele num: 5060
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 2.363e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.614e0

DP
type: SiteQuality
SIO_000300: 2.2021e5

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.020408163265306e-2
allele num: 98
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
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SIO_000300: -8.44e-2

FS
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SIO_000300: 0.0e0

VQSLOD
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MQRankSum
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SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
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SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 8.77e0

DP
type: SiteQuality
SIO_000300: 2.23761e5

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

DP
type: SiteQuality
SIO_000300: 2.36239e5

VQSLOD
type: SiteQuality
SIO_000300: -1.747e0

QD
type: SiteQuality
SIO_000300: 1.225e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5314
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.721e1

VQSLOD
type: SiteQuality
SIO_000300: -1.774e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.40779e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.85459940652819e-4
allele num: 5392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.369e0

DP
type: SiteQuality
SIO_000300: 2.49244e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: -2.23e0

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -7.779999999999999e-2

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 3.571428571428571e-3
allele num: 280
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1250
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.821493624772313e-4
allele num: 5490
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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DP
type: SiteQuality
SIO_000300: 2.72904e5

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
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Other
type: Population
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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FS
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 2.83652e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.28e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.284e0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 7.75e1
variant carriers: 5

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 28

GenotypeQuality
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bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 5.247048535198951e-3
allele num: 4574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.12781954887218e-2
allele num: 266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.447178002894356e-3
allele num: 1382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.98945e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

FS
type: SiteQuality
SIO_000300: 2.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.365e1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

GenotypeQuality
all individuals: 358
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 20
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086811352253756e-4
allele num: 4792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.05982e5

QD
type: SiteQuality
SIO_000300: 1.073e1

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 120
bin: 7.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 3.53419e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.62e-2

GenotypeQuality
all individuals: 701
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.783166904422254e-4
allele num: 5608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.53419e5

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.62e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1187
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.53e-1

DP
type: SiteQuality
SIO_000300: 3.68963e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.34e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.289e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.179e0

QD
type: SiteQuality
SIO_000300: 2.255e1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 3.77947e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.8886e5

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 2.904e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6932
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 67
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.84027105517909e-4
allele num: 2066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.36986301369863e-3
allele num: 730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

DP
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SIO_000300: 4.59473e5

ClippingRankSum
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VQSLOD
type: SiteQuality
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QD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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ReadPosRankSum
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
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SIO_000300: -1.447e0

DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.275510204081633e-3
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.340482573726542e-4
allele num: 7460
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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QD
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SIO_000300: 1.055e1

FS
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.039284971939306e-4
allele num: 9622
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.172e0

QD
type: SiteQuality
SIO_000300: 1.575e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.303e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 4.82166e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11582
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.269680040629761e-4
allele num: 7876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.397e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.127e0

DP
type: SiteQuality
SIO_000300: 5.13587e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.680672268907563e-4
allele num: 11900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 6.172839506172839e-4
allele num: 1620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 7.174630506528914e-5
allele num: 13938
num of homozygotes: 0

South Asian
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allele frequency: 3.656752803510483e-4
allele num: 8204
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Latino
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African
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allele frequency: 7.524454477050414e-4
allele num: 2658
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Other
type: Population
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 2754
num of homozygotes: 0

Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.486766995329527e-5
allele num: 15416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 5.62269e5

FS
type: SiteQuality
SIO_000300: 2.276e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.021e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 379
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.5e0
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GenotypeQuality
all individuals: 1289
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33365
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 7601
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.109877913429523e-3
allele num: 1802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.324468085106383e-4
allele num: 3008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.726916877734285e-4
allele num: 17372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

FS
type: SiteQuality
SIO_000300: 7.113e0

VQSLOD
type: SiteQuality
SIO_000300: -7.64e-2

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 5.842e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 74
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.597850425436632e-5
allele num: 17864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.198152812762384e-4
allele num: 2382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 2.281616688396349e-3
allele num: 3068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.055e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 5.891e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
all individuals: 1854
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 17

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8676
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 2.879078694817658e-3
allele num: 3126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 4.346408779745735e-4
allele num: 18406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 5.94402e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1993
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 634
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GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 712
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variant carriers: 0

GenotypeQuality
all individuals: 570
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GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 5384
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.050640890943476e-4
allele num: 19036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.143641354071363e-4
allele num: 8744
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

QD
type: SiteQuality
SIO_000300: 1.528e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.38e-1

FS
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 6.04337e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 6334
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1183
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1592
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2013
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 705
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 387
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GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.65764447695684e-4
allele num: 2734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

DP
type: SiteQuality
SIO_000300: 6.18399e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

VQSLOD
type: SiteQuality
SIO_000300: -3.248e0

QD
type: SiteQuality
SIO_000300: 3.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20730
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.428697962798937e-4
allele num: 2258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

DP
type: SiteQuality
SIO_000300: 6.23017e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 438
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GenotypeQuality
all individuals: 169
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21054
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.114578689255461e-4
allele num: 8972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1140
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.27667e5

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.551e-1

FS
type: SiteQuality
SIO_000300: 1.0363e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 172
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3054
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

DP
type: SiteQuality
SIO_000300: 6.37352e5

QD
type: SiteQuality
SIO_000300: 1.662e1

GenotypeQuality
all individuals: 5681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
all individuals: 2450
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GenotypeQuality
all individuals: 175
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GenotypeQuality
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GenotypeQuality
all individuals: 854
bin: 4.25e1
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GenotypeQuality
all individuals: 1189
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GenotypeQuality
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GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.105216622458002e-4
allele num: 9048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.523249502442555e-5
allele num: 22108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: -4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

DP
type: SiteQuality
SIO_000300: 6.42633e5

FS
type: SiteQuality
SIO_000300: 1.154e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.914e1

GenotypeQuality
all individuals: 5377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31050
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 5.599104143337066e-4
allele num: 3572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 9.89010989010989e-4
allele num: 9100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 4.436e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

DP
type: SiteQuality
SIO_000300: 6.51181e5

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.422430567840085e-5
allele num: 22612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

FS
type: SiteQuality
SIO_000300: 4.436e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 6.51181e5

GenotypeQuality
all individuals: 31390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 865
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24168
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.73224043715847e-3
allele num: 366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.922267679719462e-4
allele num: 3422
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 9.638038123795245e-4
allele num: 9338
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 1.585e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.66689e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

GenotypeQuality
all individuals: 1994
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 6864
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variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 1.019e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 1.585e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 6.66689e5

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.5e0
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GenotypeQuality
all individuals: 645
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variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 8.86202e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 2.794e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.59e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 2640
bin: 6.25e1
variant carriers: 1792

GenotypeQuality
all individuals: 1711
bin: 2.75e1
variant carriers: 1348

GenotypeQuality
all individuals: 2136
bin: 2.5e0
variant carriers: 283

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 689

GenotypeQuality
all individuals: 2710
bin: 5.25e1
variant carriers: 2660

GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 1406

GenotypeQuality
all individuals: 1872
bin: 4.25e1
variant carriers: 1797

GenotypeQuality
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bin: 8.75e1
variant carriers: 645

GenotypeQuality
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bin: 7.25e1
variant carriers: 779

GenotypeQuality
all individuals: 20802
bin: 9.75e1
variant carriers: 20800

GenotypeQuality
all individuals: 6152
bin: 2.25e1
variant carriers: 2189

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 955

European (Finnish)
type: Population
allele count: 2622
allele frequency: 6.878279118572928e-1
allele num: 3812
num of homozygotes: 784

South Asian
type: Population
allele count: 9820
allele frequency: 7.330546431770678e-1
allele num: 13396
num of homozygotes: 3532

Other
type: Population
allele count: 413
allele frequency: 6.86046511627907e-1
allele num: 602
num of homozygotes: 135

Latino
type: Population
allele count: 4527
allele frequency: 5.937827911857293e-1
allele num: 7624
num of homozygotes: 1106

East Asian
type: Population
allele count: 3360
allele frequency: 6.064981949458483e-1
allele num: 5540
num of homozygotes: 847

African
type: Population
allele count: 5789
allele frequency: 8.142053445850914e-1
allele num: 7110
num of homozygotes: 2309

European (Non-Finnish)
type: Population
allele count: 33112
allele frequency: 7.109851412866099e-1
allele num: 46572
num of homozygotes: 11039

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 2.794e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.86202e5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4805
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1596
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variant carriers: 0

GenotypeQuality
all individuals: 2608
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variant carriers: 0

GenotypeQuality
all individuals: 5305
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variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 1

GenotypeQuality
all individuals: 4081
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.202934308498921e-5
allele num: 45394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.772e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.16027e5

QD
type: SiteQuality
SIO_000300: 2.881e1

GenotypeQuality
all individuals: 4810
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 3586
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GenotypeQuality
all individuals: 2753
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
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GenotypeQuality
all individuals: 513
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GenotypeQuality
all individuals: 477
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variant carriers: 13

GenotypeQuality
all individuals: 303
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 7860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 11
allele frequency: 8.911211924821776e-4
allele num: 12344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45338
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 1.552e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.768999999999999e-1

DP
type: SiteQuality
SIO_000300: 8.15701e5

MQ
type: SiteQuality
SIO_000300: 5.871e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 7891
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 0

GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 547
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GenotypeQuality
all individuals: 105
bin: 8.75e1
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GenotypeQuality
all individuals: 3886
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 4.25e1
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GenotypeQuality
all individuals: 6216
bin: 6.25e1
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GenotypeQuality
all individuals: 1365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.785076758300607e-4
allele num: 5602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -4.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.585e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 8.21362e5

GenotypeQuality
all individuals: 3608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1668
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.78126113288208e-4
allele num: 5614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 8.24481e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

VQSLOD
type: SiteQuality
SIO_000300: -5.787e-1

GenotypeQuality
all individuals: 1668
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 4821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.504382669671926e-4
allele num: 7986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12330
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.531722054380665e-4
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 1.229310269131141e-3
allele num: 45554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

MQ
type: SiteQuality
SIO_000300: 5.799e1

QD
type: SiteQuality
SIO_000300: 1.521e1

DP
type: SiteQuality
SIO_000300: 8.24481e5

VQSLOD
type: SiteQuality
SIO_000300: -5.787e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1