17-62265812-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265812
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265812
    reference: chr 17
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136478
  ensembl transcript: ENST00000577489
  gene symbol: TEX2
  hgvsc: ENST00000577489.1:n.3T>C
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
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  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2177-37T>C
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2177-16T>C
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2177-37T>C
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
canonical: false
consequence: non coding transcript exon
filter: PASS
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
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17-62265818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265818
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265818
    reference: chr 17
allele count: 56
allele frequency: 4.702957824546081e-4
allele num: 119074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2177-43G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
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num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
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http://identifiers.org/exac.variant/17-62265821-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265821
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265821
    reference: chr 17
allele count: 1
allele frequency: 8.501666326600013e-6
allele num: 117624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
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  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.679-46G>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  hgvsc: ENST00000584379.1:c.2177-46G>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: PASS
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population: European (Finnish)
population: African
population: Latino
population: Other
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population: East Asian
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reference allele: C
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17-62265826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265826
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265826
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allele count: 1
allele frequency: 9.612981370042105e-6
allele num: 104026
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2177-30T>C
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
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population: Other
population: East Asian
reference allele: A
site quality: QD
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17-62265833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265833
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265833
    reference: chr 17
allele count: 10
allele frequency: 2.81135788585887e-4
allele num: 35570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
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  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2177-58G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2177-58G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2177-37G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.679-58G>A
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
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site quality: MQRankSum
site quality: MQ

17-62265834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265834
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265834
    reference: chr 17
allele count: 2
allele frequency: 5.651952749675013e-5
allele num: 35386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
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  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.679-59C>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
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  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2177-59C>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2177-38C>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000136478
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  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2177-59C>T
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
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http://identifiers.org/exac.variant/17-62265836-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265836
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265836
    reference: chr 17
allele count: 2
allele frequency: 5.712327202102136e-5
allele num: 35012
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2177-40T>G
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
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  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2177-61T>G
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000136478
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  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2177-61T>G
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.679-61T>G
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
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site quality: DP
site quality: QD

17-62265838-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62265838
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62265837
    reference: chr 17
allele count: 97201
allele frequency: 8.246457962161704e-1
allele num: 117870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2177-64delG
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2177-64delG
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.679-64delG
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2177-43delG
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 1194
num of homozygotes: 40124
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: TC
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-62270873-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62270873
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62270873
    reference: chr 17
allele count: 1
allele frequency: 9.075727873375444e-6
allele num: 110184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.678+46T>G
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2176+46T>G
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
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http://identifiers.org/exac.variant/17-62270878-C-A
type: Variant
location: Region
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    type: ExactPosition
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allele count: 1
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annotation: Annotation
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annotation: Annotation
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17-62270878-C-T
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location: Region
  begin: Position
    type: ExactPosition
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17-62270896-G-A
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location: Region
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    reference: chr 17
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alternate allele: A
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population: European (Finnish)
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17-62270898-A-G
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location: Region
  begin: Position
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    reference: chr 17
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genotype quality: GenotypeQuality
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population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
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17-62270910-C-T
type: Variant
location: Region
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allele count: 1
allele frequency: 9.046007996671069e-6
allele num: 110546
alternate allele: T
annotation: Annotation
  canonical: false
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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population: Other
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population: European (Non-Finnish)
population: Latino
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population: European (Finnish)
population: South Asian
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17-62270914-A-AT
type: Variant
location: Region
  begin: Position
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allele count: 1
allele frequency: 9.044044496698923e-6
allele num: 110570
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
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population: East Asian
population: South Asian
population: Latino
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17-62270924-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62270924
    reference: chr 17
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    type: ExactPosition
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    reference: chr 17
allele count: 3
allele frequency: 2.711888921029795e-5
allele num: 110624
alternate allele: C
annotation: Annotation
  canonical: false
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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population: African
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population: South Asian
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17-62270941-C-T
type: Variant
location: Region
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    reference: chr 17
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allele count: 10891
allele frequency: 9.835280943522315e-2
allele num: 110734
alternate allele: T
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser718Ser
num of homozygotes: 681
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
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17-62270942-G-A
type: Variant
location: Region
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    reference: chr 17
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    type: ExactPosition
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allele count: 1
allele frequency: 9.027552088975553e-6
allele num: 110772
alternate allele: A
annotation: Annotation
  canonical: false
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annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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population: European (Non-Finnish)
population: East Asian
population: Other
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population: African
population: South Asian
population: Latino
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17-62270959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    type: ExactPosition
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allele count: 4
allele frequency: 3.606202668589975e-5
allele num: 110920
alternate allele: T
annotation: Annotation
  canonical: true
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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hgvs: p.Ser712Ser
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population: South Asian
population: European (Non-Finnish)
population: East Asian
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17-62270960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
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    type: ExactPosition
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allele count: 6
allele frequency: 5.406087254248283e-5
allele num: 110986
alternate allele: A
annotation: Annotation
  canonical: false
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17-62270963-T-G
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location: Region
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allele count: 24
allele frequency: 2.159788340742607e-4
allele num: 111122
alternate allele: G
annotation: Annotation
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
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hgvs: p.Lys711Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
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site quality: MQ
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http://identifiers.org/exac.variant/17-62270968-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62270968
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62270968
    reference: chr 17
allele count: 2
allele frequency: 1.79849645696198e-5
allele num: 111204
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2127G>T
  hgvsp: ENSP00000258991.3:p.Lys709Asn
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.629G>T
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000136478
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  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2127G>T
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys709Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
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site quality: InbreedingCoeff
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17-62270992-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62270992
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62270992
    reference: chr 17
allele count: 1
allele frequency: 8.861320336730173e-6
allele num: 112850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2103T>C
  hgvsp: ENST00000584379.1:c.2103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
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  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2103T>C
  hgvsp: ENST00000258991.3:c.2103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
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  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  hgvsp: ENST00000583097.1:c.2103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: synonymous
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Phe701Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
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site quality: QD
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17-62271000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271000
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271000
    reference: chr 17
allele count: 2
allele frequency: 1.75435518675111e-5
allele num: 114002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl transcript: ENST00000583501
  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
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hgvs: p.Glu699Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
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population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
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site quality: QD
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17-62271012-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271012
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271012
    reference: chr 17
allele count: 73
allele frequency: 6.263191310465536e-4
allele num: 116554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2083C>A
  hgvsp: ENST00000584379.1:c.2083C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
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  hgvsc: ENST00000258991.3:c.2083C>A
  hgvsp: ENST00000258991.3:c.2083C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2083C>A
  hgvsp: ENST00000583097.1:c.2083C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.585C>A
  hgvsp: ENST00000583501.1:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
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hgvs: p.Arg695Arg
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population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
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population: European (Finnish)
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17-62271020-C-CT
type: Variant
location: Region
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allele count: 1
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alternate allele: CT
annotation: Annotation
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annotation: Annotation
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17-62271028-G-A
type: Variant
location: Region
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allele num: 119508
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annotation: Annotation
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17-62271030-G-A
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location: Region
  begin: Position
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17-62271034-G-A
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hgvs: p.Leu687Leu
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population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
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population: Other
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17-62271039-T-A
type: Variant
location: Region
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allele frequency: 8.311446524153063e-6
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annotation: Annotation
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population: Other
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17-62271044-T-A
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location: Region
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17-62271047-C-T
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17-62271048-G-C
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canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg683Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
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site quality: DP
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17-62271049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    type: ExactPosition
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allele count: 13
allele frequency: 1.075945176455009e-4
allele num: 120824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/30884
canonical: true
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gln682Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
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17-62271062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271062
    reference: chr 17
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    type: ExactPosition
    position: 62271062
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allele count: 57
allele frequency: 4.70529965329371e-4
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
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hgvs: p.Thr678Ile
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population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
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17-62271075-G-A
type: Variant
location: Region
  begin: Position
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    position: 62271075
    reference: chr 17
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    type: ExactPosition
    position: 62271075
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allele count: 3
allele frequency: 2.47390035129385e-5
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
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annotation: Annotation
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annotation: Annotation
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  gene symbol: TEX2
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  variant of: http://identifiers.org/hgnc/30884
canonical: true
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hgvs: p.Pro674Ser
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population: South Asian
population: Latino
population: African
population: Other
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population: East Asian
population: European (Finnish)
reference allele: G
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17-62271077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271077
    reference: chr 17
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    type: ExactPosition
    position: 62271077
    reference: chr 17
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1139
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genotype depth: GenotypeDepth
  all individuals: 148
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genotype depth: GenotypeDepth
  all individuals: 324
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genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 189
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genotype depth: GenotypeDepth
  all individuals: 594
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genotype depth: GenotypeDepth
  all individuals: 125
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genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 253
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 8509
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 71
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genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg673His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-62271079-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271079
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271079
    reference: chr 17
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2016C>G
  hgvsp: ENST00000258991.3:c.2016C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2016C>G
  hgvsp: ENST00000583097.1:c.2016C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2016C>G
  hgvsp: ENST00000584379.1:c.2016C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.518C>G
  hgvsp: ENST00000583501.1:c.518C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11853
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1218
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  variant carriers: 0
hgvs: p.Pro672Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

17-62271093-G-GCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271093
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271095
    reference: chr 17
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: GCT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2001_2002insAG
  hgvsp: ENSP00000463001.1:p.Pro668SerfsTer44
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.503_504insAG
  hgvsp: ENSP00000462230.1:p.Pro169SerfsTer44
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2001_2002insAG
  hgvsp: ENSP00000462665.1:p.Pro668SerfsTer44
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2001_2002insAG
  hgvsp: ENSP00000258991.3:p.Pro668SerfsTer44
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 11884
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genotype depth: GenotypeDepth
  all individuals: 88
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 43077
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hgvs: p.Pro668SerfsTer44
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

17-62271094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271094
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2001C>T
  hgvsp: ENST00000583097.1:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2001C>T
  hgvsp: ENST00000258991.3:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2001C>T
  hgvsp: ENST00000584379.1:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.503C>T
  hgvsp: ENST00000583501.1:c.503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3709
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp667Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

17-62271095-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271095
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271095
    reference: chr 17
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.502A>C
  hgvsp: ENSP00000462230.1:p.Asp168Ala
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.2000A>C
  hgvsp: ENSP00000462665.1:p.Asp667Ala
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.2000A>C
  hgvsp: ENSP00000463001.1:p.Asp667Ala
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.2000A>C
  hgvsp: ENSP00000258991.3:p.Asp667Ala
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
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genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27650
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 1134
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genotype depth: GenotypeDepth
  all individuals: 14249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 43076
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp667Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-62271096-C-CGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271096
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271098
    reference: chr 17
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: CGG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1998_1999insCC
  hgvsp: ENSP00000463001.1:p.Asp667ProfsTer45
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1998_1999insCC
  hgvsp: ENSP00000462665.1:p.Asp667ProfsTer45
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.500_501insCC
  hgvsp: ENSP00000462230.1:p.Asp168ProfsTer45
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1998_1999insCC
  hgvsp: ENSP00000258991.3:p.Asp667ProfsTer45
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 35
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11879
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 323
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 253
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genotype depth: GenotypeDepth
  all individuals: 1133
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 463
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp667ProfsTer45
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/17-62271099-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271099
    reference: chr 17
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1996G>T
  hgvsp: ENSP00000258991.3:p.Glu666Ter
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.498G>T
  hgvsp: ENSP00000462230.1:p.Glu167Ter
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1996G>T
  hgvsp: ENSP00000462665.1:p.Glu666Ter
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1996G>T
  hgvsp: ENSP00000463001.1:p.Glu666Ter
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 14252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu666Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-62271099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271099
    reference: chr 17
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1996G>A
  hgvsp: ENSP00000258991.3:p.Glu666Lys
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1996G>A
  hgvsp: ENSP00000463001.1:p.Glu666Lys
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.498G>A
  hgvsp: ENSP00000462230.1:p.Glu167Lys
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1996G>A
  hgvsp: ENSP00000462665.1:p.Glu666Lys
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 14252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu666Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-62271100-A-AGCTGGTGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271108
    reference: chr 17
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: AGCTGGTGG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsp: ENSP00000463001.1:p.Glu666HisfsTer48
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.496_497insCCACCAGC
  hgvsp: ENSP00000462230.1:p.Glu167HisfsTer48
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsp: ENSP00000258991.3:p.Glu666HisfsTer48
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
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17-62271115-C-G
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17-62271115-C-T
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canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro660Gln
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population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
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17-62271117-G-A
type: Variant
location: Region
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    type: ExactPosition
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allele count: 3
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allele num: 121386
alternate allele: A
annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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hgvs: p.Pro660Ser
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population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
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population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
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17-62271126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271126
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    type: ExactPosition
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allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
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population: East Asian
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population: African
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17-62271139-A-G
type: Variant
location: Region
  begin: Position
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allele count: 1
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allele num: 121382
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annotation: Annotation
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annotation: Annotation
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population: East Asian
population: South Asian
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17-62271149-G-A
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location: Region
  begin: Position
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allele num: 121372
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
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  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1946C>T
  hgvsp: ENSP00000462665.1:p.Ala649Val
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2006
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  variant carriers: 0
hgvs: p.Ala649Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
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site quality: MQ

http://identifiers.org/exac.variant/17-62271150-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271150
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271150
    reference: chr 17
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1945G>T
  hgvsp: ENSP00000462665.1:p.Ala649Ser
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1945G>T
  hgvsp: ENSP00000258991.3:p.Ala649Ser
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
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  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.447G>T
  hgvsp: ENSP00000462230.1:p.Ala150Ser
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
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  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1945G>T
  hgvsp: ENSP00000463001.1:p.Ala649Ser
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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hgvs: p.Ala649Ser
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
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site quality: MQ
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17-62271155-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271155
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271155
    reference: chr 17
allele count: 44
allele frequency: 3.625815808556925e-4
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1940C>G
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1940C>G
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
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  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1940C>G
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000462230
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  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.442C>G
  hgvsp: ENSP00000462230.1:p.Ser148Cys
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ser647Cys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
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site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
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site quality: DP

17-62271166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271166
    reference: chr 17
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
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  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1929T>C
  hgvsp: ENST00000258991.3:c.1929T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
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  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1929T>C
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  consequence: synonymous_variant
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  hgvsc: ENST00000583501.1:c.431T>C
  hgvsp: ENST00000583501.1:c.431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1929T>C
  hgvsp: ENST00000583097.1:c.1929T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: synonymous
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genotype quality: GenotypeQuality
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hgvs: p.Asp643Asp
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
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site quality: FS
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17-62271169-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271169
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62271169
    reference: chr 17
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1926A>G
  hgvsp: ENST00000258991.3:c.1926A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.428A>G
  hgvsp: ENST00000583501.1:c.428A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gln642Gln
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population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
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site quality: InbreedingCoeff
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17-62271175-A-T
type: Variant
location: Region
  begin: Position
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allele count: 13
allele frequency: 1.072731173567904e-4
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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hgvs: p.Gly640Gly
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population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
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17-62271183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271183
    reference: chr 17
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    type: ExactPosition
    position: 62271183
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allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
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population: South Asian
population: European (Non-Finnish)
population: East Asian
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17-62271184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
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allele count: 5
allele frequency: 4.133187845121185e-5
allele num: 120972
alternate allele: A
annotation: Annotation
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annotation: Annotation
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hgvs: p.Ile637Ile
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17-62271186-T-C
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location: Region
  begin: Position
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    reference: chr 17
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    position: 62271186
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allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: C
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
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genotype quality: GenotypeQuality
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population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
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site quality: ReadPosRankSum
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17-62271216-G-A
type: Variant
location: Region
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    type: ExactPosition
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    reference: chr 17
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    type: ExactPosition
    position: 62271216
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allele count: 2
allele frequency: 1.701316819218075e-5
allele num: 117556
alternate allele: A
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
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population: Latino
population: African
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population: European (Finnish)
population: Other
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site quality: MQRankSum
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17-62271229-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62271229
    reference: chr 17
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    type: ExactPosition
    position: 62271229
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allele count: 1
allele frequency: 8.659658116697553e-6
allele num: 115478
alternate allele: G
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/30884
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population: European (Finnish)
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17-62271238-T-C
type: Variant
location: Region
  begin: Position
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    reference: chr 17
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allele count: 1
allele frequency: 8.756874146204771e-6
allele num: 114196
alternate allele: C
annotation: Annotation
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hgvs: p.Val619Val
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population: Other
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17-62271273-T-C
type: Variant
location: Region
  begin: Position
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    reference: chr 17
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    type: ExactPosition
    position: 62271273
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allele count: 1
allele frequency: 9.759906304899473e-6
allele num: 102460
alternate allele: C
annotation: Annotation
  canonical: true
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annotation: Annotation
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annotation: Annotation
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population: European (Non-Finnish)
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17-62271277-T-A
type: Variant
location: Region
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http://identifiers.org/exac.variant/17-62271285-A-C
type: Variant
location: Region
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    reference: chr 17
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    type: ExactPosition
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allele count: 1
allele frequency: 1.00142201926736e-5
allele num: 99858
alternate allele: C
annotation: Annotation
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17-62271292-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 17
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allele count: 1
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allele num: 97582
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annotation: Annotation
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17-62271295-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 17
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allele count: 1
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allele num: 97068
alternate allele: T
annotation: Annotation
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population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
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site quality: MQRankSum
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17-62271297-C-G
type: Variant
location: Region
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allele frequency: 1.036591686534674e-5
allele num: 96470
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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population: South Asian
population: African
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17-62272219-C-T
type: Variant
location: Region
  begin: Position
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    position: 62272219
    reference: chr 17
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allele count: 3
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allele num: 121278
alternate allele: T
annotation: Annotation
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17-62272227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
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allele count: 5
allele frequency: 4.122419365477211e-5
allele num: 121288
alternate allele: T
annotation: Annotation
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http://identifiers.org/exac.variant/17-62272229-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
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    type: ExactPosition
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allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: false
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2874
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12980
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
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genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-62272231-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62272231
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62272231
    reference: chr 17
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1845+24G>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1845+24G>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1845+24G>T
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.347+24G>T
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 12982
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
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genotype depth: GenotypeDepth
  all individuals: 658
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 43
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genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 532
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-62272232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62272232
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 62272232
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000463001
  ensembl transcript: ENST00000584379
  gene symbol: TEX2
  hgvsc: ENST00000584379.1:c.1845+23G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000258991
  ensembl transcript: ENST00000258991
  gene symbol: TEX2
  hgvsc: ENST00000258991.3:c.1845+23G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462665
  ensembl transcript: ENST00000583097
  gene symbol: TEX2
  hgvsc: ENST00000583097.1:c.1845+23G>A
  variant of: http://identifiers.org/hgnc/30884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136478
  ensembl protein: ENSP00000462230
  ensembl transcript: ENST00000583501
  gene symbol: TEX2
  hgvsc: ENST00000583501.1:c.347+23G>A
  variant of: http://identifiers.org/hgnc/30884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512447442451375e-5
allele num: 66118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 2.599666e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.577e0

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
all individuals: 1596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

African
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allele count: 54
allele frequency: 5.481120584652862e-3
allele num: 9852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52151421094273e-5
allele num: 65724
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.571604e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

QD
type: SiteQuality
SIO_000300: 1.227e1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 3.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.476683937823834e-5
allele num: 15440
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65120
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.996e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.943e0

MQRankSum
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SIO_000300: -8.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
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SIO_000300: 2.543096e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-2

QD
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SIO_000300: 1.504e1

InbreedingCoeff
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SIO_000300: -4.2e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58996
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Other
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allele count: 0
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allele num: 736
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.287001287001287e-4
allele num: 7770
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.314e1

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e0

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.363e0

DP
type: SiteQuality
SIO_000300: 2.46454e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
all individuals: 398
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variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 1.180173092053501e-3
allele num: 2542
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.139723975607147e-4
allele num: 18694
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 1.314636283961437e-3
allele num: 2282
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.357e1

FS
type: SiteQuality
SIO_000300: 1.018e0

DP
type: SiteQuality
SIO_000300: 2.127438e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.995e1

GenotypeQuality
all individuals: 1139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.368839256952647e-5
allele num: 18626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2658
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.955696202531646e-4
allele num: 2528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

QD
type: SiteQuality
SIO_000300: 2.165e1

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 2.125523e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.856e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
all individuals: 965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.08201687946332e-4
allele num: 18484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.029e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 2.123476e6

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
all individuals: 2350
bin: 7.75e1
variant carriers: 2196

GenotypeQuality
all individuals: 1088
bin: 4.25e1
variant carriers: 1047

GenotypeQuality
all individuals: 2677
bin: 8.75e1
variant carriers: 2630

European (Non-Finnish)
type: Population
allele count: 54775
allele frequency: 8.384356344711464e-1
allele num: 65330
num of homozygotes: 22993

East Asian
type: Population
allele count: 7273
allele frequency: 8.544407894736842e-1
allele num: 8512
num of homozygotes: 3085

European (Finnish)
type: Population
allele count: 5032
allele frequency: 7.682442748091604e-1
allele num: 6550
num of homozygotes: 1904

Latino
type: Population
allele count: 10089
allele frequency: 8.802128773337986e-1
allele num: 11462
num of homozygotes: 4433

South Asian
type: Population
allele count: 12417
allele frequency: 8.025465356773527e-1
allele num: 15472
num of homozygotes: 4980

Other
type: Population
allele count: 738
allele frequency: 8.443935926773455e-1
allele num: 874
num of homozygotes: 319

African
type: Population
allele count: 6877
allele frequency: 7.111685625646329e-1
allele num: 9670
num of homozygotes: 2410

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

QD
type: SiteQuality
SIO_000300: 2.92e1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

DP
type: SiteQuality
SIO_000300: 1.999017e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

GenotypeQuality
all individuals: 705
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564896247378799e-5
allele num: 63902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.952022e6

MQ
type: SiteQuality
SIO_000300: 5.761e1

QD
type: SiteQuality
SIO_000300: 1.513e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.395e0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11062
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.439e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

DP
type: SiteQuality
SIO_000300: 1.953994e6

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.038e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564847270906359e-5
allele num: 63904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 1.953994e6

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31365
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563428285544542e-5
allele num: 63962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.129e0

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 1.961502e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

FS
type: SiteQuality
SIO_000300: 1.275e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.962345e6

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562451173400831e-5
allele num: 64002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 3.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 1.965459e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 11059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562402349853134e-5
allele num: 64004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 2.759e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 1.678e1

DP
type: SiteQuality
SIO_000300: 1.966392e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 1629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.961553550411926e-4
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64018
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.979e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.79e0

VQSLOD
type: SiteQuality
SIO_000300: -4.193e-1

QD
type: SiteQuality
SIO_000300: 1.693e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.969498e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 18

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 34

GenotypeQuality
all individuals: 1528
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 2389
allele frequency: 2.337573385518591e-1
allele num: 10220
num of homozygotes: 276

East Asian
type: Population
allele count: 136
allele frequency: 1.596618924630195e-2
allele num: 8518
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 782
allele frequency: 1.182340489869973e-1
allele num: 6614
num of homozygotes: 42

Other
type: Population
allele count: 72
allele frequency: 9.090909090909091e-2
allele num: 792
num of homozygotes: 3

South Asian
type: Population
allele count: 595
allele frequency: 6.567328918322296e-2
allele num: 9060
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 6485
allele frequency: 1.012553477188271e-1
allele num: 64046
num of homozygotes: 333

Latino
type: Population
allele count: 432
allele frequency: 3.761755485893417e-2
allele num: 11484
num of homozygotes: 12

QD
type: SiteQuality
SIO_000300: 1.342e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

FS
type: SiteQuality
SIO_000300: 1.862e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 3.28898e6

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64058
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.263e1

FS
type: SiteQuality
SIO_000300: 2.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

DP
type: SiteQuality
SIO_000300: 1.677316e6

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

GenotypeQuality
all individuals: 1974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.120027456241615e-5
allele num: 64102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.954652071931196e-4
allele num: 10232
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.684454e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.238692370079231e-5
allele num: 64116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.259445843828715e-3
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.162e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.685661e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38030
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55865207768322e-5
allele num: 64158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 2.150075252633842e-3
allele num: 9302
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.518891687657431e-3
allele num: 794
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

DP
type: SiteQuality
SIO_000300: 1.688372e6

QD
type: SiteQuality
SIO_000300: 1.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
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variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.116332699679018e-5
allele num: 64178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

FS
type: SiteQuality
SIO_000300: 2.435e0

DP
type: SiteQuality
SIO_000300: 1.688638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 38320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.263e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.609999999999999e0

QD
type: SiteQuality
SIO_000300: 1.248e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

DP
type: SiteQuality
SIO_000300: 1.703627e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e0

GenotypeQuality
all individuals: 3422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

DP
type: SiteQuality
SIO_000300: 1.712226e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.31e0

QD
type: SiteQuality
SIO_000300: 1.275e1

MQ
type: SiteQuality
SIO_000300: 5.991e1

FS
type: SiteQuality
SIO_000300: 2.623e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.531839803590609e-3
allele num: 13034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.731957503968739e-4
allele num: 65512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.93000693000693e-4
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

FS
type: SiteQuality
SIO_000300: 1.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.396e1

DP
type: SiteQuality
SIO_000300: 1.737757e6

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-5
allele num: 65900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14288
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 6.521e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.407e0

DP
type: SiteQuality
SIO_000300: 1.745504e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 6.051e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -1.062e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.249e1

GenotypeQuality
all individuals: 41660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8386
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.572029442691903e-5
allele num: 15216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

FS
type: SiteQuality
SIO_000300: 9.814e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.202e0

DP
type: SiteQuality
SIO_000300: 1.756496e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 2.364e1

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.525711302531976e-5
allele num: 15324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

DP
type: SiteQuality
SIO_000300: 1.75825e6

FS
type: SiteQuality
SIO_000300: 4.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 1.702e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

GenotypeQuality
all individuals: 8425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
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GenotypeQuality
all individuals: 2912
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.442468754026543e-5
allele num: 15522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.577e1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: -6.708e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.108e0

DP
type: SiteQuality
SIO_000300: 1.761387e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15782
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.764737e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8452
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e0

VQSLOD
type: SiteQuality
SIO_000300: -1.403e0

FS
type: SiteQuality
SIO_000300: 4.373e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.347e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.275e0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

DP
type: SiteQuality
SIO_000300: 1.768068e6

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.377e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

FS
type: SiteQuality
SIO_000300: 2.696e0

DP
type: SiteQuality
SIO_000300: 1.770061e6

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.195786864931847e-5
allele num: 16140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.771191e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
all individuals: 2005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8464
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.804077214504781e-4
allele num: 66516
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.772311e6

QD
type: SiteQuality
SIO_000300: 1.433e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.298e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

FS
type: SiteQuality
SIO_000300: 1.105e0

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42812
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 8.256522652895788e-4
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.778466e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000390050706592e-5
allele num: 66658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 1.775062e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.436e0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.73e-1

FS
type: SiteQuality
SIO_000300: 6.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

DP
type: SiteQuality
SIO_000300: 1.775408e6

QD
type: SiteQuality
SIO_000300: 1.339e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.427e0

GenotypeQuality
all individuals: 2851
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.775435e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.809e0

QD
type: SiteQuality
SIO_000300: 1.27e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.072e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 1.686e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.172e0

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.551e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.634e1

MQ
type: SiteQuality
SIO_000300: 5.058e1

DP
type: SiteQuality
SIO_000300: 1.776019e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1914
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

FS
type: SiteQuality
SIO_000300: 2.443e0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.524e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 1.77602e6

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.038e1

MQ
type: SiteQuality
SIO_000300: 5.072e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.65e0

FS
type: SiteQuality
SIO_000300: 9.036e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.807e0

QD
type: SiteQuality
SIO_000300: 1.607e1

MQRankSum
type: SiteQuality
SIO_000300: -9.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.776078e6

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.06e1

ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -2.0e-4

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.77609e6

MQRankSum
type: SiteQuality
SIO_000300: -9.343999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.776244e6

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.134e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
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BaseQRankSum
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MQ
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.094e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.624e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.776244e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.043e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1121e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.746e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 1.733e0

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.776463e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.776463e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.776181e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
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African
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InbreedingCoeff
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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African
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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Other
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num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.774956e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.095e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.015e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.513e0

GenotypeQuality
all individuals: 572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 43091
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 5.997181324777354e-4
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.417e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

FS
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.777492e6

GenotypeQuality
all individuals: 43053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.99e-1

FS
type: SiteQuality
SIO_000300: 6.077e0

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

DP
type: SiteQuality
SIO_000300: 1.771899e6

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

GenotypeQuality
all individuals: 43027
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variant carriers: 0

GenotypeQuality
all individuals: 574
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variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000300030003e-5
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.593e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.24e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 1.0562e1

VQSLOD
type: SiteQuality
SIO_000300: -1.578e0

DP
type: SiteQuality
SIO_000300: 1.771643e6

GenotypeQuality
all individuals: 8491
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 2796
bin: 9.75e1
variant carriers: 13

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.950838860710105e-4
allele num: 66638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.163e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.770659e6

FS
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

GenotypeQuality
all individuals: 2783
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 8467
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

VQSLOD
type: SiteQuality
SIO_000300: -1.606e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.767114e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

FS
type: SiteQuality
SIO_000300: 9.412000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
all individuals: 1996
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
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variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 46
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.927525057825752e-4
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226993865030675e-4
allele num: 16300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.766356e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.269e0

QD
type: SiteQuality
SIO_000300: 1.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 1.838e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeQuality
all individuals: 574
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42671
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 8467
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.765473e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.51e0

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 1852
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 8.25e1
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GenotypeQuality
all individuals: 457
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.062411955656275e-5
allele num: 65308
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.464e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 2.141e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

DP
type: SiteQuality
SIO_000300: 1.707923e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 357
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.425007425007424e-5
allele num: 13468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.053e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 2.157e0

DP
type: SiteQuality
SIO_000300: 1.677224e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e0

QD
type: SiteQuality
SIO_000300: 1.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 7939
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560208443848098e-5
allele num: 64094
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.226e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.701e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e0

FS
type: SiteQuality
SIO_000300: 2.766e0

DP
type: SiteQuality
SIO_000300: 1.661561e6

MQRankSum
type: SiteQuality
SIO_000300: -1.099e0

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 324
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GenotypeQuality
all individuals: 1600
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.707766923970216e-5
allele num: 58556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.584e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 335
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GenotypeQuality
all individuals: 546
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 8.307619273676715e-4
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.494e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.302171e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.753832123189168e-5
allele num: 57018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.677e0

DP
type: SiteQuality
SIO_000300: 1.207556e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55656
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.335113484646195e-4
allele num: 7490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

DP
type: SiteQuality
SIO_000300: 1.145936e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.132e1

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.476e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2974
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6359
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.182872013248167e-4
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.536e1

DP
type: SiteQuality
SIO_000300: 1.137165e6

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.352082206598161e-4
allele num: 7396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

DP
type: SiteQuality
SIO_000300: 1.130602e6

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

GenotypeQuality
all individuals: 41305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 1.769835e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0758e1

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: -2.342e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.58e-1

GenotypeQuality
all individuals: 2208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.785697755149271e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.265e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

FS
type: SiteQuality
SIO_000300: 3.346e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

DP
type: SiteQuality
SIO_000300: 1.771656e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41605
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.77178e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 1.466e0

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.531e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

QD
type: SiteQuality
SIO_000300: 3.461e1

DP
type: SiteQuality
SIO_000300: 1.772125e6

FS
type: SiteQuality
SIO_000300: 3.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1