19-55505758-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505758
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2830T>A
  hgvsp: ENSP00000445135.1:p.Phe944Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2761T>A
  hgvsp: ENSP00000402474.2:p.Phe921Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2758T>A
  hgvsp: ENSP00000375601.4:p.Phe920Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2758T>A
  hgvsp: ENSP00000441133.1:p.Phe920Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2830T>A
  hgvsp: ENSP00000409370.2:p.Phe944Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2821T>A
  hgvsp: ENSP00000263437.6:p.Phe941Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1173T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3141T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2764T>A
  hgvsp: ENSP00000344074.7:p.Phe922Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*390T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2764T>A
  hgvsp: ENSP00000440601.1:p.Phe922Ile
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe944Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-55505763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505763
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505763
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3146G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1178G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2766G>A
  hgvsp: ENST00000427260.2:c.2766G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2763G>A
  hgvsp: ENST00000538819.1:c.2763G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2835G>A
  hgvsp: ENST00000448584.2:c.2835G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2769G>A
  hgvsp: ENST00000339757.7:c.2769G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2835G>A
  hgvsp: ENST00000543010.1:c.2835G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2826G>A
  hgvsp: ENST00000263437.6:c.2826G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2763G>A
  hgvsp: ENST00000391721.4:c.2763G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2769G>A
  hgvsp: ENST00000537859.1:c.2769G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*395G>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu945Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

19-55505765-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505765
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*397G>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2837G>T
  hgvsp: ENSP00000409370.2:p.Cys946Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2837G>T
  hgvsp: ENSP00000445135.1:p.Cys946Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2771G>T
  hgvsp: ENSP00000440601.1:p.Cys924Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2765G>T
  hgvsp: ENSP00000441133.1:p.Cys922Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2765G>T
  hgvsp: ENSP00000375601.4:p.Cys922Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2771G>T
  hgvsp: ENSP00000344074.7:p.Cys924Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3148G>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2828G>T
  hgvsp: ENSP00000263437.6:p.Cys943Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2768G>T
  hgvsp: ENSP00000402474.2:p.Cys923Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1180G>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys946Phe
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-55505783-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505783
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505783
    reference: chr 19
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2786C>A
  hgvsp: ENSP00000402474.2:p.Pro929Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*415C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2855C>A
  hgvsp: ENSP00000445135.1:p.Pro952Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2846C>A
  hgvsp: ENSP00000263437.6:p.Pro949Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2783C>A
  hgvsp: ENSP00000441133.1:p.Pro928Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3166C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2789C>A
  hgvsp: ENSP00000344074.7:p.Pro930Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2789C>A
  hgvsp: ENSP00000440601.1:p.Pro930Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2783C>A
  hgvsp: ENSP00000375601.4:p.Pro928Gln
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1198C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2855C>A
  hgvsp: ENSP00000409370.2:p.Pro952Gln
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro952Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-55505784-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505784
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505784
    reference: chr 19
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1199A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2847A>G
  hgvsp: ENST00000263437.6:c.2847A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3167A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2784A>G
  hgvsp: ENST00000391721.4:c.2784A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2856A>G
  hgvsp: ENST00000448584.2:c.2856A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2787A>G
  hgvsp: ENST00000427260.2:c.2787A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2784A>G
  hgvsp: ENST00000538819.1:c.2784A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2856A>G
  hgvsp: ENST00000543010.1:c.2856A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*416A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2790A>G
  hgvsp: ENST00000537859.1:c.2790A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2790A>G
  hgvsp: ENST00000339757.7:c.2790A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro952Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

19-55505787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505787
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505787
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1202G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3170G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2859G>A
  hgvsp: ENST00000448584.2:c.2859G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2793G>A
  hgvsp: ENST00000537859.1:c.2793G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2790G>A
  hgvsp: ENST00000427260.2:c.2790G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2850G>A
  hgvsp: ENST00000263437.6:c.2850G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2787G>A
  hgvsp: ENST00000391721.4:c.2787G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2793G>A
  hgvsp: ENST00000339757.7:c.2793G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2787G>A
  hgvsp: ENST00000538819.1:c.2787G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*419G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2859G>A
  hgvsp: ENST00000543010.1:c.2859G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu953Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-55505790-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505790
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505790
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2796C>G
  hgvsp: ENSP00000344074.7:p.Cys932Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2862C>G
  hgvsp: ENSP00000445135.1:p.Cys954Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2853C>G
  hgvsp: ENSP00000263437.6:p.Cys951Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2793C>G
  hgvsp: ENSP00000402474.2:p.Cys931Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2862C>G
  hgvsp: ENSP00000409370.2:p.Cys954Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3173C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2790C>G
  hgvsp: ENSP00000441133.1:p.Cys930Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2796C>G
  hgvsp: ENSP00000440601.1:p.Cys932Trp
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*422C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1205C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2790C>G
  hgvsp: ENSP00000375601.4:p.Cys930Trp
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys954Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

19-55505792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505792
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505792
    reference: chr 19
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2798A>G
  hgvsp: ENSP00000440601.1:p.Asn933Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2798A>G
  hgvsp: ENSP00000344074.7:p.Asn933Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2864A>G
  hgvsp: ENSP00000445135.1:p.Asn955Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*424A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2795A>G
  hgvsp: ENSP00000402474.2:p.Asn932Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2864A>G
  hgvsp: ENSP00000409370.2:p.Asn955Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3175A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2792A>G
  hgvsp: ENSP00000441133.1:p.Asn931Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2855A>G
  hgvsp: ENSP00000263437.6:p.Asn952Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2792A>G
  hgvsp: ENSP00000375601.4:p.Asn931Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1207A>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn955Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-55505797-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505797
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505797
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2803A>G
  hgvsp: ENSP00000344074.7:p.Arg935Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3180A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2800A>G
  hgvsp: ENSP00000402474.2:p.Arg934Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*429A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2797A>G
  hgvsp: ENSP00000441133.1:p.Arg933Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2860A>G
  hgvsp: ENSP00000263437.6:p.Arg954Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2803A>G
  hgvsp: ENSP00000440601.1:p.Arg935Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2797A>G
  hgvsp: ENSP00000375601.4:p.Arg933Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1212A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2869A>G
  hgvsp: ENSP00000409370.2:p.Arg957Gly
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2869A>G
  hgvsp: ENSP00000445135.1:p.Arg957Gly
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg957Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

19-55505798-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505798
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505798
    reference: chr 19
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2801G>C
  hgvsp: ENSP00000402474.2:p.Arg934Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2798G>C
  hgvsp: ENSP00000441133.1:p.Arg933Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2804G>C
  hgvsp: ENSP00000344074.7:p.Arg935Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2861G>C
  hgvsp: ENSP00000263437.6:p.Arg954Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3181G>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2804G>C
  hgvsp: ENSP00000440601.1:p.Arg935Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1213G>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2870G>C
  hgvsp: ENSP00000409370.2:p.Arg957Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2798G>C
  hgvsp: ENSP00000375601.4:p.Arg933Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*430G>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2870G>C
  hgvsp: ENSP00000445135.1:p.Arg957Thr
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg957Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-55505799-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505799
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505799
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1214A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2805A>T
  hgvsp: ENSP00000440601.1:p.Arg935Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2871A>T
  hgvsp: ENSP00000445135.1:p.Arg957Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2871A>T
  hgvsp: ENSP00000409370.2:p.Arg957Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3182A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*431A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2799A>T
  hgvsp: ENSP00000441133.1:p.Arg933Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2799A>T
  hgvsp: ENSP00000375601.4:p.Arg933Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2802A>T
  hgvsp: ENSP00000402474.2:p.Arg934Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2862A>T
  hgvsp: ENSP00000263437.6:p.Arg954Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2805A>T
  hgvsp: ENSP00000344074.7:p.Arg935Ser
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg957Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

19-55505803-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505803
    reference: chr 19
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1218C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2809C>T
  hgvsp: ENST00000537859.1:c.2809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2809C>T
  hgvsp: ENST00000339757.7:c.2809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2875C>T
  hgvsp: ENST00000448584.2:c.2875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2803C>T
  hgvsp: ENST00000538819.1:c.2803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3186C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2806C>T
  hgvsp: ENST00000427260.2:c.2806C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*435C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2875C>T
  hgvsp: ENST00000543010.1:c.2875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2803C>T
  hgvsp: ENST00000391721.4:c.2803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2866C>T
  hgvsp: ENST00000263437.6:c.2866C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu959Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

19-55505807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505807
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505807
    reference: chr 19
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807G>A
  hgvsp: ENSP00000441133.1:p.Trp936Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879G>A
  hgvsp: ENSP00000445135.1:p.Trp960Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879G>A
  hgvsp: ENSP00000409370.2:p.Trp960Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807G>A
  hgvsp: ENSP00000375601.4:p.Trp936Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813G>A
  hgvsp: ENSP00000344074.7:p.Trp938Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870G>A
  hgvsp: ENSP00000263437.6:p.Trp957Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810G>A
  hgvsp: ENSP00000402474.2:p.Trp937Ter
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445846
  ensembl transcript: ENST00000543277
  gene symbol: NLRP2
  hgvsc: ENST00000543277.1:c.*439G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813G>A
  hgvsp: ENSP00000440601.1:p.Trp938Ter
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Trp960Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

19-55505810-GAGTTAACTTATA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505810
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505798
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2879+8_2879+19delAACTTATAAGTT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: GAGTTAACTTATA
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-55505815-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505815
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505815
    reference: chr 19
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+8A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+8A>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32856
  bin: 9.75e1
  variant carriers: 1
hgvs: c.2879+8A>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

19-55505818-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505818
    reference: chr 19
allele count: 12
allele frequency: 9.884515905833511e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+11T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+11T>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

19-55505821-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505821
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505821
    reference: chr 19
allele count: 16
allele frequency: 1.317978879388458e-4
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+14T>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+14T>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

19-55505821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505821
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505821
    reference: chr 19
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+14T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+14T>C
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4124
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-55505825-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505825
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505825
    reference: chr 19
allele count: 7
allele frequency: 5.766442599182813e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+18T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+18T>C
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-55505827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505827
    reference: chr 19
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+20C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+20C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

19-55505829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505829
    reference: chr 19
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+22A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+22A>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-55505832-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505831
    reference: chr 19
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+27delC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+27delC
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: TC
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-55505833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505833
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505833
    reference: chr 19
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+26C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+26C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-55505834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505834
    reference: chr 19
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+27C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+27C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

19-55505836-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505836
    reference: chr 19
allele count: 75
allele frequency: 6.178331356267299e-4
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+29A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+29A>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-55505840-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505840
    reference: chr 19
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+33T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+33T>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32827
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

19-55505841-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505842
    reference: chr 19
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+35dupA
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+35dupA
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-55505841-T-TAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: TAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+37_2870+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+37_2879+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+37_3190+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+37_2879+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+37_2807+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+37_1222+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+37_2813+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+37_2813+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+37_2807+38dupAC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+37_2810+38dupAC
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-55505843-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
allele count: 69
allele frequency: 5.684345805941377e-4
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+36C>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+36C>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32840
  bin: 9.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

19-55505843-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+36C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+36C>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32840
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS

19-55505843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505843
    reference: chr 19
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+36C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+36C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

19-55505848-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505848
    reference: chr 19
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+41T>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+41T>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32815
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

19-55505856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505856
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505856
    reference: chr 19
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+49C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+49C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32817
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-55505856-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55505856
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55505854
    reference: chr 19
allele count: 9
allele frequency: 7.415952537903758e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2879+52_2879+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2807+52_2807+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2807+52_2807+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2813+52_2813+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2810+52_2810+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1222+52_1222+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2813+52_2813+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2879+52_2879+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3190+52_3190+53delTG
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2870+52_2870+53delTG
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: CTG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

19-55508634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508634
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508634
    reference: chr 19
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-51G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-51G>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-55508635-CATCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508635
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508631
    reference: chr 19
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-46_2880-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-46_3191-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-46_2808-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-46_1223-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-46_2808-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-46_2880-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-46_2811-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-46_2871-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-46_2814-43delGATC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-46_2814-43delGATC
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: CATCG
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-55508636-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508636
    reference: chr 19
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-49A>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-49A>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43588
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-55508639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508639
    reference: chr 19
allele count: 48
allele frequency: 3.956283072053805e-4
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-46G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-46G>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-55508655-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508655
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508655
    reference: chr 19
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-30A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-30A>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-55508660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-25C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-25C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-55508660-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508658
    reference: chr 19
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-22_2880-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-22_2814-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-22_3191-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-22_2811-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-22_2808-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-22_2880-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-22_2814-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-22_1223-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-22_2808-21delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-22_2871-21delGT
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: CGT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

19-55508660-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-25C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-25C>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

19-55508660-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508659
    reference: chr 19
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.49902563333833e-5
  allele num: 66710
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11574
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
reference allele: CG
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-55508660-CGTGTTGATTTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508648
    reference: chr 19
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: CGTGTTGATTTCT
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

19-55508661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508661
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508661
    reference: chr 19
allele count: 7
allele frequency: 5.767963085036256e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-24G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-24G>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-55508671-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508671
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508669
    reference: chr 19
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-10_2814-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-10_1223-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-10_2880-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-10_3191-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-10_2871-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-10_2814-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-10_2811-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-10_2880-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-10_2808-9delGT
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-10_2808-9delGT
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: CTG
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

19-55508672-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508672
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508672
    reference: chr 19
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-13T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-13T>C
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55508674-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508674
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508674
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-11T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-11T>C
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-55508679-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508679
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508679
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-6C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-6C>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2880-6C>G
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

19-55508680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508680
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508680
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2814-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2871-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2814-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2808-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2811-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1223-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2880-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2808-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3191-5C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2880-5C>T
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2880-5C>T
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-55508692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508692
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508692
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1230G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3198G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2815G>A
  hgvsp: ENSP00000441133.1:p.Gly939Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2887G>A
  hgvsp: ENSP00000445135.1:p.Gly963Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2821G>A
  hgvsp: ENSP00000440601.1:p.Gly941Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2818G>A
  hgvsp: ENSP00000402474.2:p.Gly940Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2815G>A
  hgvsp: ENSP00000375601.4:p.Gly939Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2887G>A
  hgvsp: ENSP00000409370.2:p.Gly963Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2878G>A
  hgvsp: ENSP00000263437.6:p.Gly960Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2821G>A
  hgvsp: ENSP00000344074.7:p.Gly941Arg
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly963Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55508700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508700
    reference: chr 19
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2895C>T
  hgvsp: ENST00000448584.2:c.2895C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2886C>T
  hgvsp: ENST00000263437.6:c.2886C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2829C>T
  hgvsp: ENST00000339757.7:c.2829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2826C>T
  hgvsp: ENST00000427260.2:c.2826C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3206C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2823C>T
  hgvsp: ENST00000538819.1:c.2823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2829C>T
  hgvsp: ENST00000537859.1:c.2829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2895C>T
  hgvsp: ENST00000543010.1:c.2895C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1238C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2823C>T
  hgvsp: ENST00000391721.4:c.2823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43600
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser965Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-55508704-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508704
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508704
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2827C>G
  hgvsp: ENSP00000375601.4:p.Pro943Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2830C>G
  hgvsp: ENSP00000402474.2:p.Pro944Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2899C>G
  hgvsp: ENSP00000409370.2:p.Pro967Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2827C>G
  hgvsp: ENSP00000441133.1:p.Pro943Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2899C>G
  hgvsp: ENSP00000445135.1:p.Pro967Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1242C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2890C>G
  hgvsp: ENSP00000263437.6:p.Pro964Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3210C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2833C>G
  hgvsp: ENSP00000344074.7:p.Pro945Ala
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2833C>G
  hgvsp: ENSP00000440601.1:p.Pro945Ala
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro967Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

19-55508707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508707
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508707
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2902C>T
  hgvsp: ENSP00000445135.1:p.Pro968Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2836C>T
  hgvsp: ENSP00000344074.7:p.Pro946Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1245C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2836C>T
  hgvsp: ENSP00000440601.1:p.Pro946Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3213C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2833C>T
  hgvsp: ENSP00000402474.2:p.Pro945Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2902C>T
  hgvsp: ENSP00000409370.2:p.Pro968Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2830C>T
  hgvsp: ENSP00000441133.1:p.Pro944Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2830C>T
  hgvsp: ENSP00000375601.4:p.Pro944Ser
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2893C>T
  hgvsp: ENSP00000263437.6:p.Pro965Ser
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro968Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-55508708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508708
    reference: chr 19
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2903C>T
  hgvsp: ENSP00000409370.2:p.Pro968Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2831C>T
  hgvsp: ENSP00000375601.4:p.Pro944Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3214C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1246C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2894C>T
  hgvsp: ENSP00000263437.6:p.Pro965Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2834C>T
  hgvsp: ENSP00000402474.2:p.Pro945Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2837C>T
  hgvsp: ENSP00000440601.1:p.Pro946Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2903C>T
  hgvsp: ENSP00000445135.1:p.Pro968Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2831C>T
  hgvsp: ENSP00000441133.1:p.Pro944Leu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2837C>T
  hgvsp: ENSP00000344074.7:p.Pro946Leu
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro968Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

19-55508709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508709
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508709
    reference: chr 19
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2904G>A
  hgvsp: ENST00000543010.1:c.2904G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2835G>A
  hgvsp: ENST00000427260.2:c.2835G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2838G>A
  hgvsp: ENST00000537859.1:c.2838G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2904G>A
  hgvsp: ENST00000448584.2:c.2904G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1247G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2895G>A
  hgvsp: ENST00000263437.6:c.2895G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3215G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2838G>A
  hgvsp: ENST00000339757.7:c.2838G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2832G>A
  hgvsp: ENST00000538819.1:c.2832G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2832G>A
  hgvsp: ENST00000391721.4:c.2832G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro968Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-55508714-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508714
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508714
    reference: chr 19
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1252G>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2909G>C
  hgvsp: ENSP00000445135.1:p.Ser970Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2900G>C
  hgvsp: ENSP00000263437.6:p.Ser967Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2909G>C
  hgvsp: ENSP00000409370.2:p.Ser970Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2840G>C
  hgvsp: ENSP00000402474.2:p.Ser947Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2843G>C
  hgvsp: ENSP00000440601.1:p.Ser948Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2837G>C
  hgvsp: ENSP00000375601.4:p.Ser946Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3220G>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2837G>C
  hgvsp: ENSP00000441133.1:p.Ser946Thr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2843G>C
  hgvsp: ENSP00000344074.7:p.Ser948Thr
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser970Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-55508725-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508725
    reference: chr 19
allele count: 544
allele frequency: 4.480685281278313e-3
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2851C>G
  hgvsp: ENSP00000402474.2:p.Leu951Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2920C>G
  hgvsp: ENSP00000445135.1:p.Leu974Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2920C>G
  hgvsp: ENSP00000409370.2:p.Leu974Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3231C>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2854C>G
  hgvsp: ENSP00000344074.7:p.Leu952Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2911C>G
  hgvsp: ENSP00000263437.6:p.Leu971Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2854C>G
  hgvsp: ENSP00000440601.1:p.Leu952Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2848C>G
  hgvsp: ENSP00000375601.4:p.Leu950Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2848C>G
  hgvsp: ENSP00000441133.1:p.Leu950Val
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1263C>G
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 9.75e1
  variant carriers: 461
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu974Val
num of homozygotes: 10
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

19-55508725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508725
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2851C>T
  hgvsp: ENSP00000402474.2:p.Leu951Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3231C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2920C>T
  hgvsp: ENSP00000445135.1:p.Leu974Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2854C>T
  hgvsp: ENSP00000440601.1:p.Leu952Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2848C>T
  hgvsp: ENSP00000375601.4:p.Leu950Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2911C>T
  hgvsp: ENSP00000263437.6:p.Leu971Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2920C>T
  hgvsp: ENSP00000409370.2:p.Leu974Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1263C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2854C>T
  hgvsp: ENSP00000344074.7:p.Leu952Phe
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2848C>T
  hgvsp: ENSP00000441133.1:p.Leu950Phe
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu974Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

19-55508729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508729
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508729
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2924G>A
  hgvsp: ENSP00000409370.2:p.Cys975Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2858G>A
  hgvsp: ENSP00000440601.1:p.Cys953Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1267G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2852G>A
  hgvsp: ENSP00000375601.4:p.Cys951Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3235G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2915G>A
  hgvsp: ENSP00000263437.6:p.Cys972Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2924G>A
  hgvsp: ENSP00000445135.1:p.Cys975Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2852G>A
  hgvsp: ENSP00000441133.1:p.Cys951Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2855G>A
  hgvsp: ENSP00000402474.2:p.Cys952Tyr
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2858G>A
  hgvsp: ENSP00000344074.7:p.Cys953Tyr
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys975Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

19-55508734-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508735
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2860dupC
  hgvsp: ENSP00000375601.4:p.Leu954ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2866dupC
  hgvsp: ENSP00000440601.1:p.Leu956ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2866dupC
  hgvsp: ENSP00000344074.7:p.Leu956ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2932dupC
  hgvsp: ENSP00000409370.2:p.Leu978ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1275dupC
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2923dupC
  hgvsp: ENSP00000263437.6:p.Leu975ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2860dupC
  hgvsp: ENSP00000441133.1:p.Leu954ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2863dupC
  hgvsp: ENSP00000402474.2:p.Leu955ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2932dupC
  hgvsp: ENSP00000445135.1:p.Leu978ProfsTer20
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3243dupC
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu978ProfsTer20
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

19-55508741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508741
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508741
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2867G>A
  hgvsp: ENSP00000402474.2:p.Ser956Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3247G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2936G>A
  hgvsp: ENSP00000409370.2:p.Ser979Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1279G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2870G>A
  hgvsp: ENSP00000440601.1:p.Ser957Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2864G>A
  hgvsp: ENSP00000375601.4:p.Ser955Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2927G>A
  hgvsp: ENSP00000263437.6:p.Ser976Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2936G>A
  hgvsp: ENSP00000445135.1:p.Ser979Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2864G>A
  hgvsp: ENSP00000441133.1:p.Ser955Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2870G>A
  hgvsp: ENSP00000344074.7:p.Ser957Asn
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser979Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-55508750-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508750
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508750
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2879A>G
  hgvsp: ENSP00000440601.1:p.Gln960Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2876A>G
  hgvsp: ENSP00000402474.2:p.Gln959Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2945A>G
  hgvsp: ENSP00000445135.1:p.Gln982Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2936A>G
  hgvsp: ENSP00000263437.6:p.Gln979Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2945A>G
  hgvsp: ENSP00000409370.2:p.Gln982Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2873A>G
  hgvsp: ENSP00000441133.1:p.Gln958Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1288A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2879A>G
  hgvsp: ENSP00000344074.7:p.Gln960Arg
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3256A>G
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2873A>G
  hgvsp: ENSP00000375601.4:p.Gln958Arg
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln982Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

19-55508757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508757
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508757
    reference: chr 19
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2886C>T
  hgvsp: ENST00000339757.7:c.2886C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2952C>T
  hgvsp: ENST00000448584.2:c.2952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1295C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2883C>T
  hgvsp: ENST00000427260.2:c.2883C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2943C>T
  hgvsp: ENST00000263437.6:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2886C>T
  hgvsp: ENST00000537859.1:c.2886C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3263C>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2880C>T
  hgvsp: ENST00000391721.4:c.2880C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2880C>T
  hgvsp: ENST00000538819.1:c.2880C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2952C>T
  hgvsp: ENST00000543010.1:c.2952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43589
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Leu984Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-55508758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508758
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2881G>A
  hgvsp: ENSP00000375601.4:p.Val961Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2944G>A
  hgvsp: ENSP00000263437.6:p.Val982Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2881G>A
  hgvsp: ENSP00000441133.1:p.Val961Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2887G>A
  hgvsp: ENSP00000344074.7:p.Val963Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2884G>A
  hgvsp: ENSP00000402474.2:p.Val962Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2887G>A
  hgvsp: ENSP00000440601.1:p.Val963Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1296G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2953G>A
  hgvsp: ENSP00000409370.2:p.Val985Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2953G>A
  hgvsp: ENSP00000445135.1:p.Val985Ile
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3264G>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val985Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

19-55508789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508789
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508789
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2975G>A
  hgvsp: ENSP00000263437.6:p.Gly992Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2918G>A
  hgvsp: ENSP00000440601.1:p.Gly973Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3295G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2912G>A
  hgvsp: ENSP00000375601.4:p.Gly971Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2912G>A
  hgvsp: ENSP00000441133.1:p.Gly971Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2915G>A
  hgvsp: ENSP00000402474.2:p.Gly972Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2918G>A
  hgvsp: ENSP00000344074.7:p.Gly973Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2984G>A
  hgvsp: ENSP00000445135.1:p.Gly995Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2984G>A
  hgvsp: ENSP00000409370.2:p.Gly995Glu
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1327G>A
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly995Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-55508790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508790
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508790
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2916G>T
  hgvsp: ENST00000427260.2:c.2916G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2913G>T
  hgvsp: ENST00000538819.1:c.2913G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1328G>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3296G>T
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2919G>T
  hgvsp: ENST00000537859.1:c.2919G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2913G>T
  hgvsp: ENST00000391721.4:c.2913G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2919G>T
  hgvsp: ENST00000339757.7:c.2919G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2985G>T
  hgvsp: ENST00000448584.2:c.2985G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2976G>T
  hgvsp: ENST00000263437.6:c.2976G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2985G>T
  hgvsp: ENST00000543010.1:c.2985G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly995Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

19-55508793-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508793
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508793
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2979T>C
  hgvsp: ENST00000263437.6:c.2979T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2988T>C
  hgvsp: ENST00000448584.2:c.2988T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2916T>C
  hgvsp: ENST00000538819.1:c.2916T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2922T>C
  hgvsp: ENST00000339757.7:c.2922T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2916T>C
  hgvsp: ENST00000391721.4:c.2916T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3299T>C
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2988T>C
  hgvsp: ENST00000543010.1:c.2988T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2922T>C
  hgvsp: ENST00000537859.1:c.2922T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2919T>C
  hgvsp: ENST00000427260.2:c.2919T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1331T>C
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser996Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

19-55508795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55508795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55508795
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000542755
  gene symbol: NLRP2
  hgvsc: ENST00000542755.1:n.1333G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000375601
  ensembl transcript: ENST00000391721
  gene symbol: NLRP2
  hgvsc: ENST00000391721.4:c.2918G>A
  hgvsp: ENSP00000375601.4:p.Ser973Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000445135
  ensembl transcript: ENST00000543010
  gene symbol: NLRP2
  hgvsc: ENST00000543010.1:c.2990G>A
  hgvsp: ENSP00000445135.1:p.Ser997Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000402474
  ensembl transcript: ENST00000427260
  gene symbol: NLRP2
  hgvsc: ENST00000427260.2:c.2921G>A
  hgvsp: ENSP00000402474.2:p.Ser974Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000409370
  ensembl transcript: ENST00000448584
  gene symbol: NLRP2
  hgvsc: ENST00000448584.2:c.2990G>A
  hgvsp: ENSP00000409370.2:p.Ser997Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000440601
  ensembl transcript: ENST00000537859
  gene symbol: NLRP2
  hgvsc: ENST00000537859.1:c.2924G>A
  hgvsp: ENSP00000440601.1:p.Ser975Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000022556
  ensembl transcript: ENST00000540597
  gene symbol: NLRP2
  hgvsc: ENST00000540597.1:n.3301G>A
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000344074
  ensembl transcript: ENST00000339757
  gene symbol: NLRP2
  hgvsc: ENST00000339757.7:c.2924G>A
  hgvsp: ENSP00000344074.7:p.Ser975Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000263437
  ensembl transcript: ENST00000263437
  gene symbol: NLRP2
  hgvsc: ENST00000263437.6:c.2981G>A
  hgvsp: ENSP00000263437.6:p.Ser994Asn
  variant of: http://identifiers.org/hgnc/22948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000022556
  ensembl protein: ENSP00000441133
  ensembl transcript: ENST00000538819
  gene symbol: NLRP2
  hgvsc: ENST00000538819.1:c.2918G>A
  hgvsp: ENSP00000441133.1:p.Ser973Asn
  variant of: http://identifiers.org/hgnc/22948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser997Asn
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.49e-1

DP
type: SiteQuality
SIO_000300: 2.984547e6

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeDepth
all individuals: 1321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32864
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

QD
type: SiteQuality
SIO_000300: 9.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.984512e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 5.361e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: -2.923e-1

GenotypeDepth
all individuals: 8578
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32863
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.77e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.984457e6

FS
type: SiteQuality
SIO_000300: 2.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeDepth
all individuals: 4333
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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African
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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SIO_000300: 5.649999999999999e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 1.97e0

QD
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SIO_000300: 1.293e1

DP
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GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66736
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African
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Latino
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East Asian
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Other
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South Asian
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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European (Finnish)
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Latino
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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InbreedingCoeff
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QD
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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Latino
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African
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European (Finnish)
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QD
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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MQRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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East Asian
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European (Finnish)
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Other
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

DP
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SIO_000300: 2.984254e6

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.92e-1

MQ
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SIO_000300: 5.909e1

QD
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VQSLOD
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SIO_000300: -4.251e-1

BaseQRankSum
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SIO_000300: 1.32e0

MQRankSum
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SIO_000300: -1.054e0

FS
type: SiteQuality
SIO_000300: 3.025e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

South Asian
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Other
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 2.1e-1

MQ
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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SIO_000300: 2.73e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 6.74e-1

BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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SIO_000300: 1.5e0

MQ
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SIO_000300: 5.981e1

FS
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SIO_000300: 2.338e0

QD
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SIO_000300: 1.165e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

VQSLOD
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FS
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SIO_000300: 1.218e0

DP
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SIO_000300: 2.984015e6

ClippingRankSum
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InbreedingCoeff
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MQRankSum
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SIO_000300: -2.195e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

MQ
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SIO_000300: 5.974e1

BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -3.0e-4

VQSLOD
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FS
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.798237727027513e-4
allele num: 66732
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 9.691096305269534e-4
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African
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.997152704930316e-5
allele num: 66730
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European (Finnish)
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African
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Other
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South Asian
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East Asian
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Latino
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

DP
type: SiteQuality
SIO_000300: 2.983124e6

FS
type: SiteQuality
SIO_000300: 2.961e0

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.903e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

VQSLOD
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SIO_000300: 7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.265e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

FS
type: SiteQuality
SIO_000300: 3.797e0

DP
type: SiteQuality
SIO_000300: 2.982823e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.982e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.123e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
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SIO_000300: 5.879e1

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.98212e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.631e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.982101e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e0

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.098e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.981475e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.287e1

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.833e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.981456e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.471e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
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SIO_000300: 1.61e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 75

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 67
allele frequency: 1.004136442659313e-3
allele num: 66724
num of homozygotes: 0

European (Finnish)
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allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
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SIO_000300: -8.82e-1

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

QD
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SIO_000300: 1.393e1

ReadPosRankSum
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SIO_000300: -9.69e-1

DP
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MQRankSum
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SIO_000300: 4.74e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.27e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
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SIO_000300: -8.82e-1

BaseQRankSum
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QD
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DP
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.69e-1

InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
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allele count: 62
allele frequency: 5.959246443675509e-3
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
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SIO_000300: 5.14e0

BaseQRankSum
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SIO_000300: -3.345e0

MQRankSum
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MQ
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SIO_000300: 5.972e1

ClippingRankSum
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SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 2.976818e6

ReadPosRankSum
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SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
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SIO_000300: -3.345e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
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SIO_000300: 5.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 2.976818e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.976818e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

QD
type: SiteQuality
SIO_000300: 1.335e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
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South Asian
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East Asian
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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VQSLOD
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MQ
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -4.3e-2

DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 6
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allele num: 66702
num of homozygotes: 0

Other
type: Population
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Latino
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allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
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European (Finnish)
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African
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East Asian
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South Asian
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele count: 0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 3.174767e6

VQSLOD
type: SiteQuality
SIO_000300: -9.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 8.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.081e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

QD
type: SiteQuality
SIO_000300: 1.235e1

BaseQRankSum
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SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.349e0

MQ
type: SiteQuality
SIO_000300: 5.574e1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 3.174895e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.465e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.804e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
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SIO_000300: 8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.152e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

DP
type: SiteQuality
SIO_000300: 3.175236e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 2.301914223406833e-3
allele num: 16508
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199760047990402e-4
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.73e-2

FS
type: SiteQuality
SIO_000300: 8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

DP
type: SiteQuality
SIO_000300: 3.177107e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.043e1

DP
type: SiteQuality
SIO_000300: 3.181028e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.615e-1

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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DP
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SIO_000300: 3.181839e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

South Asian
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East Asian
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African
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
type: SiteQuality
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African
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num of homozygotes: 0

South Asian
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East Asian
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MQ
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.181839e6

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 2549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43597
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3610
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 6.533e0

DP
type: SiteQuality
SIO_000300: 3.18172e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.103e1

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43602
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.55e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.709e0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 3.182422e6

MQ
type: SiteQuality
SIO_000300: 6.032e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43599
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 2.584e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

DP
type: SiteQuality
SIO_000300: 3.182123e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43599
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.885e1

DP
type: SiteQuality
SIO_000300: 3.18245e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.336000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.762e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.178e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 3.182667e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.139e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 2855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43602
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.386e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 3.182689e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 3.182628e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.115e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.588e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
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GenotypeQuality
all individuals: 1268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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QD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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East Asian
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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QD
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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African
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Other
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QD
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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Latino
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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MQ
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ClippingRankSum
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MQRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Other
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQ
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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East Asian
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FS
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MQ
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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South Asian
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3037
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43588
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3612
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

DP
type: SiteQuality
SIO_000300: 3.182253e6

FS
type: SiteQuality
SIO_000300: 6.132e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1