17-33310015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310015
    reference: chr 17
allele count: 1
allele frequency: 9.472029098073389e-6
allele num: 105574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1439G>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.24-6G>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2374G>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.-4-6G>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.47-6G>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-236G>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.-4-6G>C
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
hgvs: c.-4-6G>C
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-33310018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310018
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310018
    reference: chr 17
allele count: 1
allele frequency: 9.374707040404987e-6
allele num: 106670
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.-4-3C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.47-3C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2377C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-233C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1442C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.-4-3C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.24-3C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41484
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
hgvs: c.-4-3C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-33310023-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310023
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310023
    reference: chr 17
allele count: 7
allele frequency: 6.471055891434171e-5
allele num: 108174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.49A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.-2A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.-2A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2382A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.26A>G
  hgvsp: ENSP00000468479.1:p.Tyr9Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-228A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1447A>G
  variant of: http://identifiers.org/hgnc/6600
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12843
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34391
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr9Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-33310029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310029
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310029
    reference: chr 17
allele count: 1
allele frequency: 9.161200483711386e-6
allele num: 109156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1453C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.32C>T
  hgvsp: ENSP00000468479.1:p.Ser11Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-222C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.5C>T
  hgvsp: ENSP00000367787.3:p.Ser2Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.55C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2388C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.5C>T
  hgvsp: ENSP00000262327.4:p.Ser2Phe
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser2Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

17-33310034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310034
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310034
    reference: chr 17
allele count: 1
allele frequency: 9.071446714322e-6
allele num: 110236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.10G>A
  hgvsp: ENSP00000262327.4:p.Ala4Thr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.37G>A
  hgvsp: ENSP00000468479.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.10G>A
  hgvsp: ENSP00000367787.3:p.Ala4Thr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-217G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2393G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.60G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1458G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4663
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala4Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

17-33310043-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310043
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310043
    reference: chr 17
allele count: 1
allele frequency: 8.92936869363336e-6
allele num: 111990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.46A>G
  hgvsp: ENSP00000468479.1:p.Ile16Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.19A>G
  hgvsp: ENSP00000367787.3:p.Ile7Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.69A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-208A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.19A>G
  hgvsp: ENSP00000262327.4:p.Ile7Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2402A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1467A>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile7Val
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-33310048-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310048
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310048
    reference: chr 17
allele count: 2
allele frequency: 1.773238287761109e-5
allele num: 112788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.24C>A
  hgvsp: ENSP00000262327.4:p.Phe8Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1472C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.74C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.24C>A
  hgvsp: ENSP00000367787.3:p.Phe8Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2407C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-203C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.51C>A
  hgvsp: ENSP00000468479.1:p.Phe17Leu
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe8Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-33310053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310053
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310053
    reference: chr 17
allele count: 1
allele frequency: 8.783332747777817e-6
allele num: 113852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-198C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.56C>G
  hgvsp: ENSP00000468479.1:p.Pro19Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.29C>G
  hgvsp: ENSP00000367787.3:p.Pro10Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1477C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.79C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.29C>G
  hgvsp: ENSP00000262327.4:p.Pro10Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2412C>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro10Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

17-33310061-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310061
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310061
    reference: chr 17
allele count: 3
allele frequency: 2.591792656587473e-5
allele num: 115750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.37C>G
  hgvsp: ENSP00000262327.4:p.Leu13Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.87C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-190C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.37C>G
  hgvsp: ENSP00000367787.3:p.Leu13Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2420C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1485C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.64C>G
  hgvsp: ENSP00000468479.1:p.Leu22Val
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu13Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-33310065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310065
    reference: chr 17
allele count: 2
allele frequency: 1.71503052754339e-5
allele num: 116616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.91G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2424G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1489G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.41G>A
  hgvsp: ENSP00000367787.3:p.Arg14His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.41G>A
  hgvsp: ENSP00000262327.4:p.Arg14His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-186G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.68G>A
  hgvsp: ENSP00000468479.1:p.Arg23His
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg14His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-33310065-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310065
    reference: chr 17
allele count: 1
allele frequency: 8.575152637716951e-6
allele num: 116616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.91G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2424G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.41G>T
  hgvsp: ENSP00000262327.4:p.Arg14Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.41G>T
  hgvsp: ENSP00000367787.3:p.Arg14Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-186G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1489G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.68G>T
  hgvsp: ENSP00000468479.1:p.Arg23Leu
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg14Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-33310071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310071
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310071
    reference: chr 17
allele count: 1
allele frequency: 8.512232077495362e-6
allele num: 117478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.74T>C
  hgvsp: ENSP00000468479.1:p.Leu25Pro
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.47T>C
  hgvsp: ENSP00000367787.3:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.47T>C
  hgvsp: ENSP00000262327.4:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2430T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1495T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.97T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-180T>C
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu16Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

17-33310072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310072
    reference: chr 17
allele count: 39
allele frequency: 3.317116320212296e-4
allele num: 117572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-179C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.75C>T
  hgvsp: ENST00000585941.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.48C>T
  hgvsp: ENST00000378526.4:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.98C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2431C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.48C>T
  hgvsp: ENST00000262327.5:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1496C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37481
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu16Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-33310073-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310073
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310073
    reference: chr 17
allele count: 1
allele frequency: 8.495887990212738e-6
allele num: 117704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.76A>C
  hgvsp: ENSP00000468479.1:p.Ser26Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.49A>C
  hgvsp: ENSP00000367787.3:p.Ser17Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-178A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2432A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1497A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.99A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.49A>C
  hgvsp: ENSP00000262327.4:p.Ser17Arg
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser17Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-33310076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310076
    reference: chr 17
allele count: 1
allele frequency: 8.469408496510604e-6
allele num: 118072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.102C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.52C>T
  hgvsp: ENSP00000367787.3:p.Arg18Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-175C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.52C>T
  hgvsp: ENSP00000262327.4:p.Arg18Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2435C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.79C>T
  hgvsp: ENSP00000468479.1:p.Arg27Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1500C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg18Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-33310077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310077
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310077
    reference: chr 17
allele count: 2
allele frequency: 1.688704257223433e-5
allele num: 118434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.103G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.53G>A
  hgvsp: ENSP00000367787.3:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2436G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-174G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.53G>A
  hgvsp: ENSP00000262327.4:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1501G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.80G>A
  hgvsp: ENSP00000468479.1:p.Arg27Gln
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg18Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-33310090-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310090
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310090
    reference: chr 17
allele count: 2
allele frequency: 1.665556295802798e-5
allele num: 120080
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.66C>A
  hgvsp: ENSP00000367787.3:p.Cys22Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-161C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1514C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.116C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2449C>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.66C>A
  hgvsp: ENSP00000262327.4:p.Cys22Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.93C>A
  hgvsp: ENSP00000468479.1:p.Cys31Ter
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys22Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-33310091-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310091
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310091
    reference: chr 17
allele count: 1
allele frequency: 8.319882856049386e-6
allele num: 120194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2450C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.117C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.67C>G
  hgvsp: ENSP00000262327.4:p.Leu23Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-160C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.94C>G
  hgvsp: ENSP00000468479.1:p.Leu32Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.67C>G
  hgvsp: ENSP00000367787.3:p.Leu23Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1515C>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu23Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-33310091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310091
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310091
    reference: chr 17
allele count: 45
allele frequency: 3.743947285222224e-4
allele num: 120194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.117C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.94C>T
  hgvsp: ENST00000585941.1:c.94C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.67C>T
  hgvsp: ENST00000378526.4:c.67C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2450C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1515C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-160C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.67C>T
  hgvsp: ENST00000262327.5:c.67C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38700
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 9.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 49471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu23Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-33310094-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310094
    reference: chr 17
allele count: 3
allele frequency: 2.490825459557297e-5
allele num: 120442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-157T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1518T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.70T>G
  hgvsp: ENSP00000262327.4:p.Phe24Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.120T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.97T>G
  hgvsp: ENSP00000468479.1:p.Phe33Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.70T>G
  hgvsp: ENSP00000367787.3:p.Phe24Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2453T>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe24Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

17-33310095-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310095
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310094
    reference: chr 17
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1521delC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.123delC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-154delC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.73delC
  hgvsp: ENSP00000367787.3:p.Arg25GlufsTer8
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2456delC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.73delC
  hgvsp: ENSP00000262327.4:p.Arg25GlufsTer8
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.100delC
  hgvsp: ENSP00000468479.1:p.Arg34GlufsTer8
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg25GlufsTer8
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: TC
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-33310097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310097
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310097
    reference: chr 17
allele count: 2
allele frequency: 1.657989853102099e-5
allele num: 120628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-154C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.73C>T
  hgvsp: ENSP00000367787.3:p.Arg25Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.123C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.100C>T
  hgvsp: ENSP00000468479.1:p.Arg34Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1521C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.73C>T
  hgvsp: ENSP00000262327.4:p.Arg25Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2456C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg25Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-33310098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310098
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310098
    reference: chr 17
allele count: 7
allele frequency: 5.798638148412001e-5
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.101G>A
  hgvsp: ENSP00000468479.1:p.Arg34Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2457G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.124G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.74G>A
  hgvsp: ENSP00000367787.3:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.74G>A
  hgvsp: ENSP00000262327.4:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1522G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-153G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg25Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

17-33310105-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310105
    reference: chr 17
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.81T>C
  hgvsp: ENST00000262327.5:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1529T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2464T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.108T>C
  hgvsp: ENST00000585941.1:c.108T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.81T>C
  hgvsp: ENST00000378526.4:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.131T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-146T>C
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His27His
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

17-33310110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310110
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310110
    reference: chr 17
allele count: 3
allele frequency: 2.476800634060962e-5
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.86G>A
  hgvsp: ENSP00000262327.4:p.Trp29Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.136G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1534G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.113G>A
  hgvsp: ENSP00000468479.1:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-141G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2469G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.86G>A
  hgvsp: ENSP00000367787.3:p.Trp29Ter
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Trp29Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

17-33310112-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310112
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310112
    reference: chr 17
allele count: 15
allele frequency: 1.238093665912805e-4
allele num: 121154
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.88C>T
  hgvsp: ENSP00000367787.3:p.Arg30Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-139C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.115C>T
  hgvsp: ENSP00000468479.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2471C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.88C>T
  hgvsp: ENSP00000262327.4:p.Arg30Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.138C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1536C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg30Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-33310113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310113
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310113
    reference: chr 17
allele count: 5
allele frequency: 4.126025317291347e-5
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.89G>A
  hgvsp: ENSP00000262327.4:p.Arg30His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2472G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-138G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.139G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.89G>A
  hgvsp: ENSP00000367787.3:p.Arg30His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1537G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.116G>A
  hgvsp: ENSP00000468479.1:p.Arg39His
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg30His
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-33310114-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310114
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310114
    reference: chr 17
allele count: 2
allele frequency: 1.650192247396822e-5
allele num: 121198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.117T>G
  hgvsp: ENST00000585941.1:c.117T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-137T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1538T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.90T>G
  hgvsp: ENST00000378526.4:c.90T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.90T>G
  hgvsp: ENST00000262327.5:c.90T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2473T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.140T>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg30Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-33310119-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310119
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310119
    reference: chr 17
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-132T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1543T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2478T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.95T>G
  hgvsp: ENSP00000262327.4:p.Val32Gly
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.95T>G
  hgvsp: ENSP00000367787.3:p.Val32Gly
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.122T>G
  hgvsp: ENSP00000468479.1:p.Val41Gly
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.145T>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val32Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-33310121-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310121
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310121
    reference: chr 17
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2480A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1545A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-130A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.124A>C
  hgvsp: ENST00000585941.1:c.124A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.97A>C
  hgvsp: ENST00000262327.5:c.97A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.97A>C
  hgvsp: ENST00000378526.4:c.97A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.147A>C
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg33Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-33310126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310126
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310126
    reference: chr 17
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.102A>G
  hgvsp: ENST00000262327.5:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2485A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-125A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.102A>G
  hgvsp: ENST00000378526.4:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.152A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1550A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.129A>G
  hgvsp: ENST00000585941.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln34Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

17-33310131-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310131
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310131
    reference: chr 17
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.134G>A
  hgvsp: ENSP00000468479.1:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2490G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1555G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.107G>A
  hgvsp: ENSP00000262327.4:p.Ser36Asn
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-120G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.157G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.107G>A
  hgvsp: ENSP00000367787.3:p.Ser36Asn
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5667
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser36Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-33310137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310137
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310137
    reference: chr 17
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.113G>A
  hgvsp: ENSP00000262327.4:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.163G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1561G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.113G>A
  hgvsp: ENSP00000367787.3:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.140G>A
  hgvsp: ENSP00000468479.1:p.Trp47Ter
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-114G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2496G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Trp38Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-33310146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310146
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310146
    reference: chr 17
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2505C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1570C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-105C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.172C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.149C>T
  hgvsp: ENSP00000468479.1:p.Thr50Ile
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.122C>T
  hgvsp: ENSP00000262327.4:p.Thr41Ile
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.122C>T
  hgvsp: ENSP00000367787.3:p.Thr41Ile
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr41Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-33310164-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310164
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310164
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1588A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2523A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.167A>G
  hgvsp: ENSP00000468479.1:p.His56Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.190A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-87A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.140A>G
  hgvsp: ENSP00000262327.4:p.His47Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.140A>G
  hgvsp: ENSP00000367787.3:p.His47Arg
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His47Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-33310167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310167
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.143C>T
  hgvsp: ENSP00000367787.3:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.143C>T
  hgvsp: ENSP00000262327.4:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1591C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-84C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.193C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.170C>T
  hgvsp: ENSP00000468479.1:p.Pro57Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2526C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro48Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-33310179-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310179
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310179
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.155G>A
  hgvsp: ENSP00000367787.3:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.182G>A
  hgvsp: ENSP00000468479.1:p.Arg61Lys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2538G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.205G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-72G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.155G>A
  hgvsp: ENSP00000262327.4:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1603G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg52Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-33310180-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310180
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-71A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2539A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1604A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.183A>G
  hgvsp: ENST00000585941.1:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.206A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.156A>G
  hgvsp: ENST00000262327.5:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.156A>G
  hgvsp: ENST00000378526.4:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg52Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-33310187-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310187
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310187
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.213C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.163C>G
  hgvsp: ENSP00000367787.3:p.Pro55Ala
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.190C>G
  hgvsp: ENSP00000468479.1:p.Pro64Ala
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.163C>G
  hgvsp: ENSP00000262327.4:p.Pro55Ala
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2546C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1611C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-64C>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro55Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-33310188-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310188
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310188
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.164C>G
  hgvsp: ENSP00000367787.3:p.Pro55Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1612C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-63C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.191C>G
  hgvsp: ENSP00000468479.1:p.Pro64Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.214C>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.164C>G
  hgvsp: ENSP00000262327.4:p.Pro55Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2547C>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro55Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-33310191-TTCTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310191
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310187
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-57_-35-54delTATC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.170_173delTATC
  hgvsp: ENSP00000262327.4:p.Leu57HisfsTer7
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1618_596+1621delTATC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.197_200delTATC
  hgvsp: ENSP00000468479.1:p.Leu66HisfsTer7
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.220_223delTATC
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.170_173delTATC
  hgvsp: ENSP00000367787.3:p.Leu57HisfsTer7
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2553_-267+2556delTATC
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 39097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu57HisfsTer7
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: TTCTA
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

17-33310195-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310195
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310195
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.198A>T
  hgvsp: ENST00000585941.1:c.198A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2554A>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.171A>T
  hgvsp: ENST00000262327.5:c.171A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.171A>T
  hgvsp: ENST00000378526.4:c.171A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.221A>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-56A>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1619A>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu57Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-33310197-C-CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310197
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310236
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5681
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-33310198-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310198
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.201A>C
  hgvsp: ENST00000585941.1:c.201A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-53A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1622A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.224A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.174A>C
  hgvsp: ENST00000378526.4:c.174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.174A>C
  hgvsp: ENST00000262327.5:c.174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2557A>C
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser58Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-33310199-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310199
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310199
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2558T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.202T>G
  hgvsp: ENSP00000468479.1:p.Phe68Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.175T>G
  hgvsp: ENSP00000262327.4:p.Phe59Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1623T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.175T>G
  hgvsp: ENSP00000367787.3:p.Phe59Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.225T>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-52T>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe59Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-33310203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310203
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310203
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.179A>G
  hgvsp: ENSP00000367787.3:p.Gln60Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.179A>G
  hgvsp: ENSP00000262327.4:p.Gln60Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.206A>G
  hgvsp: ENSP00000468479.1:p.Gln69Arg
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-48A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1627A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2562A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.229A>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50355
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln60Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

17-33310204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310204
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310204
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.180G>A
  hgvsp: ENST00000262327.5:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2563G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.207G>A
  hgvsp: ENST00000585941.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.180G>A
  hgvsp: ENST00000378526.4:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.230G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1628G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-47G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln60Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/17-33310207-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310207
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310207
    reference: chr 17
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-44A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.210A>C
  hgvsp: ENST00000585941.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2566A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.183A>C
  hgvsp: ENST00000262327.5:c.183A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1631A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.233A>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.183A>C
  hgvsp: ENST00000378526.4:c.183A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly61Gly
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

17-33310208-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310208
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310208
    reference: chr 17
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-43A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2567A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.211A>G
  hgvsp: ENSP00000468479.1:p.Ser71Gly
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.234A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.184A>G
  hgvsp: ENSP00000262327.4:p.Ser62Gly
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.184A>G
  hgvsp: ENSP00000367787.3:p.Ser62Gly
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1632A>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser62Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

17-33310224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310224
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310224
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.200G>A
  hgvsp: ENSP00000367787.3:p.Arg67His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2583G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.227G>A
  hgvsp: ENSP00000468479.1:p.Arg76His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.250G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-27G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.200G>A
  hgvsp: ENSP00000262327.4:p.Arg67His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1648G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg67His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-33310225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310225
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310225
    reference: chr 17
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-26T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.228T>C
  hgvsp: ENST00000585941.1:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.251T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.201T>C
  hgvsp: ENST00000378526.4:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.201T>C
  hgvsp: ENST00000262327.5:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2584T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1649T>C
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg67Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-33310227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310227
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310227
    reference: chr 17
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.203C>T
  hgvsp: ENSP00000262327.4:p.Ala68Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.230C>T
  hgvsp: ENSP00000468479.1:p.Ala77Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1651C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.203C>T
  hgvsp: ENSP00000367787.3:p.Ala68Val
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-24C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2586C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.253C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala68Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-33310233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310233
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310233
    reference: chr 17
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.209A>G
  hgvsp: ENSP00000262327.4:p.Tyr70Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.236A>G
  hgvsp: ENSP00000468479.1:p.Tyr79Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.259A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2592A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.209A>G
  hgvsp: ENSP00000367787.3:p.Tyr70Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-18A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1657A>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr70Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-33310235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310235
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310235
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.261C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2594C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1659C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.211C>T
  hgvsp: ENSP00000262327.4:p.Leu71Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.211C>T
  hgvsp: ENSP00000367787.3:p.Leu71Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.238C>T
  hgvsp: ENSP00000468479.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-16C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu71Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-33310244-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310244
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310244
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.220T>C
  hgvsp: ENST00000262327.5:c.220T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.220T>C
  hgvsp: ENST00000378526.4:c.220T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.247T>C
  hgvsp: ENST00000585941.1:c.247T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2603T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1668T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-7T>C
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.270T>C
  variant of: http://identifiers.org/hgnc/6600
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
hgvs: c.-35-7T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-33310250-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310250
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310250
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.276G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.226G>T
  hgvsp: ENSP00000367787.3:p.Gly76Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.226G>T
  hgvsp: ENSP00000262327.4:p.Gly76Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1674G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.253G>T
  hgvsp: ENSP00000468479.1:p.Gly85Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-35-1G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2609G>T
  variant of: http://identifiers.org/hgnc/6600
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
hgvs: c.-35-1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS

17-33310259-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310259
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310259
    reference: chr 17
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1683G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.235G>T
  hgvsp: ENSP00000262327.4:p.Val79Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2618G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.285G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.262G>T
  hgvsp: ENSP00000468479.1:p.Val88Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.235G>T
  hgvsp: ENSP00000367787.3:p.Val79Leu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-27G>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val79Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-33310263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310263
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310263
    reference: chr 17
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.239G>A
  hgvsp: ENSP00000262327.4:p.Gly80Glu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.289G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1687G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2622G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.266G>A
  hgvsp: ENSP00000468479.1:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.239G>A
  hgvsp: ENSP00000367787.3:p.Gly80Glu
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly80Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

17-33310272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310272
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310272
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1696G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2631G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.248G>A
  hgvsp: ENSP00000262327.4:p.Ser83Asn
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.248G>A
  hgvsp: ENSP00000367787.3:p.Ser83Asn
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.275G>A
  hgvsp: ENSP00000468479.1:p.Ser92Asn
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.298G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser83Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-33310277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310277
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310277
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.253C>T
  hgvsp: ENSP00000367787.3:p.Pro85Ser
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.280C>T
  hgvsp: ENSP00000468479.1:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.303C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.253C>T
  hgvsp: ENSP00000262327.4:p.Pro85Ser
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1701C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2636C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro85Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-33310289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310289
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310289
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.265G>A
  hgvsp: ENSP00000262327.4:p.Ala89Thr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2648G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.265G>A
  hgvsp: ENSP00000367787.3:p.Ala89Thr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.4G>A
  hgvsp: ENSP00000467063.1:p.Ala2Thr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.315G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1713G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.292G>A
  hgvsp: ENSP00000468479.1:p.Ala98Thr
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala89Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-33310298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310298
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310298
    reference: chr 17
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.274C>T
  hgvsp: ENSP00000262327.4:p.Arg92Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.301C>T
  hgvsp: ENSP00000468479.1:p.Arg101Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.324C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1722C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.274C>T
  hgvsp: ENSP00000367787.3:p.Arg92Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.13C>T
  hgvsp: ENSP00000467063.1:p.Arg5Trp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2657C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5717
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg92Trp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

17-33310299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310299
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310299
    reference: chr 17
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.275G>A
  hgvsp: ENSP00000367787.3:p.Arg92Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2658G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1723G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.302G>A
  hgvsp: ENSP00000468479.1:p.Arg101Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.275G>A
  hgvsp: ENSP00000262327.4:p.Arg92Gln
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.325G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.14G>A
  hgvsp: ENSP00000467063.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg92Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-33310310-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310310
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.25G>T
  hgvsp: ENSP00000467063.1:p.Asp9Tyr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.313G>T
  hgvsp: ENSP00000468479.1:p.Asp105Tyr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.336G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.286G>T
  hgvsp: ENSP00000367787.3:p.Asp96Tyr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.286G>T
  hgvsp: ENSP00000262327.4:p.Asp96Tyr
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2669G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1734G>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50497
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp96Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-33310312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310312
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310312
    reference: chr 17
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.288C>T
  hgvsp: ENST00000378526.4:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.338C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.27C>T
  hgvsp: ENST00000592690.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.288C>T
  hgvsp: ENST00000262327.5:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1736C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2671C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.315C>T
  hgvsp: ENST00000585941.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp96Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-33310314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310314
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310314
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.290A>G
  hgvsp: ENSP00000262327.4:p.Tyr97Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1738A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.290A>G
  hgvsp: ENSP00000367787.3:p.Tyr97Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2673A>G
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.29A>G
  hgvsp: ENSP00000467063.1:p.Tyr10Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.317A>G
  hgvsp: ENSP00000468479.1:p.Tyr106Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.340A>G
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr97Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

17-33310322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310322
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310322
    reference: chr 17
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.298C>T
  hgvsp: ENSP00000367787.3:p.Arg100Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1746C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.37C>T
  hgvsp: ENSP00000467063.1:p.Arg13Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2681C>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.325C>T
  hgvsp: ENSP00000468479.1:p.Arg109Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.298C>T
  hgvsp: ENSP00000262327.4:p.Arg100Cys
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.348C>T
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg100Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-33310323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310323
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310323
    reference: chr 17
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1747G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.38G>A
  hgvsp: ENSP00000467063.1:p.Arg13His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.299G>A
  hgvsp: ENSP00000367787.3:p.Arg100His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.299G>A
  hgvsp: ENSP00000262327.4:p.Arg100His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.326G>A
  hgvsp: ENSP00000468479.1:p.Arg109His
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.349G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-267+2682G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg100His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

17-33310326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310326
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310326
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.329G>A
  hgvsp: ENSP00000468479.1:p.Gly110Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.302G>A
  hgvsp: ENSP00000367787.3:p.Gly101Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-266-2681G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.41G>A
  hgvsp: ENSP00000467063.1:p.Gly14Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.302G>A
  hgvsp: ENSP00000262327.4:p.Gly101Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.352G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1750G>A
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly101Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

17-33310335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310335
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310335
    reference: chr 17
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.311G>A
  hgvsp: ENSP00000367787.3:p.Gly104Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1759G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.361G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.50G>A
  hgvsp: ENSP00000467063.1:p.Gly17Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.338G>A
  hgvsp: ENSP00000468479.1:p.Gly113Asp
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-266-2672G>A
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.311G>A
  hgvsp: ENSP00000262327.4:p.Gly104Asp
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly104Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/17-33310339-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310339
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310340
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1769dupA
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.371dupA
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-266-2662dupA
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.321dupA
  hgvsp: ENSP00000367787.3:p.Cys108MetfsTer26
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.60dupA
  hgvsp: ENSP00000467063.1:p.Cys21MetfsTer26
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.348dupA
  hgvsp: ENSP00000468479.1:p.Cys117MetfsTer26
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.321dupA
  hgvsp: ENSP00000262327.4:p.Cys108MetfsTer26
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys108MetfsTer26
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-33310347-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33310347
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33310347
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467757
  ensembl transcript: ENST00000585740
  gene symbol: LIG3
  hgvsc: ENST00000585740.1:c.-266-2660G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000367787
  ensembl transcript: ENST00000378526
  gene symbol: LIG3
  hgvsc: ENST00000378526.4:c.323G>T
  hgvsp: ENSP00000367787.3:p.Cys108Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000586407
  gene symbol: LIG3
  hgvsc: ENST00000586407.1:n.596+1771G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000467063
  ensembl transcript: ENST00000592690
  gene symbol: LIG3
  hgvsc: ENST00000592690.1:c.62G>T
  hgvsp: ENSP00000467063.1:p.Cys21Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005156
  ensembl transcript: ENST00000590181
  gene symbol: LIG3
  hgvsc: ENST00000590181.1:n.373G>T
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000468479
  ensembl transcript: ENST00000585941
  gene symbol: LIG3
  hgvsc: ENST00000585941.1:c.350G>T
  hgvsp: ENSP00000468479.1:p.Cys117Phe
  variant of: http://identifiers.org/hgnc/6600
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005156
  ensembl protein: ENSP00000262327
  ensembl transcript: ENST00000262327
  gene symbol: LIG3
  hgvsc: ENST00000262327.5:c.323G>T
  hgvsp: ENSP00000262327.4:p.Cys108Phe
  variant of: http://identifiers.org/hgnc/6600
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys108Phe
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 6116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39564
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631481058504911e-5
allele num: 61294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 4.258e0

QD
type: SiteQuality
SIO_000300: 1.212e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.345818e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 638
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618437237003949e-5
allele num: 61788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.597e0

FS
type: SiteQuality
SIO_000300: 1.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.514e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.367769e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.120537858171922e-4
allele num: 62470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 1.390568e6

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62938
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.038205980066445e-4
allele num: 9632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.397e-1

DP
type: SiteQuality
SIO_000300: 1.407063e6

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 5.775e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

QD
type: SiteQuality
SIO_000300: 2.835e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
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GenotypeQuality
all individuals: 1141
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GenotypeQuality
all individuals: 675
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GenotypeQuality
all individuals: 492
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 1372
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.002004008016032e-4
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.972e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 2.591e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.469e0

FS
type: SiteQuality
SIO_000300: 2.302e0

DP
type: SiteQuality
SIO_000300: 1.413916e6

MQ
type: SiteQuality
SIO_000300: 5.814e1

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1329
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GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 240
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.785802143735723e-5
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.68e0

MQRankSum
type: SiteQuality
SIO_000300: -8.52e-1

DP
type: SiteQuality
SIO_000300: 1.42834e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 925
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117887319552272e-5
allele num: 64146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.173e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.161e0

FS
type: SiteQuality
SIO_000300: 2.261e0

DP
type: SiteQuality
SIO_000300: 1.435499e6

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 938
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11890
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551301541993733e-5
allele num: 64462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.915e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 3.645e1

FS
type: SiteQuality
SIO_000300: 6.963e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.894e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 1.442592e6

VQSLOD
type: SiteQuality
SIO_000300: -1.396e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
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African
type: Population
allele count: 3
allele frequency: 2.953337271116361e-4
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8592
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.457306e6

FS
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.063256241384592e-5
allele num: 65290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
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MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.525e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5352
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13552
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.531628120692296e-5
allele num: 65290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 4.252e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.333e1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.525e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 868
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10234
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.525413387027885e-5
allele num: 65556
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
SIO_000300: 1.435e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -1.929e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14130
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European (Non-Finnish)
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allele count: 32
allele frequency: 4.878346240624428e-4
allele num: 65596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 5
allele frequency: 7.562008469449486e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.155e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.242e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.476839e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14216
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.523554147114388e-5
allele num: 65636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

FS
type: SiteQuality
SIO_000300: 1.964e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

DP
type: SiteQuality
SIO_000300: 1.476391e6

QD
type: SiteQuality
SIO_000300: 1.62e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14430
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QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 7.09e0

MQRankSum
type: SiteQuality
SIO_000300: -7.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.471e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.092e0

VQSLOD
type: SiteQuality
SIO_000300: -4.143e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.481922e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.168e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 1.845e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 1.485317e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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South Asian
type: Population
allele count: 1
allele frequency: 6.349206349206349e-5
allele num: 15750
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 1.502907e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.718e0

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

QD
type: SiteQuality
SIO_000300: 7.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506931886678722e-5
allele num: 66360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.506032e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 10314
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15818
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European (Non-Finnish)
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allele num: 66360
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East Asian
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Latino
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allele num: 11550
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.905e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.506032e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
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South Asian
type: Population
allele count: 3
allele frequency: 1.879228263593084e-4
allele num: 15964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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Other
type: Population
allele count: 0
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FS
type: SiteQuality
SIO_000300: 7.417e0

DP
type: SiteQuality
SIO_000300: 1.506214e6

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 1.458e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.75e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.06e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

DP
type: SiteQuality
SIO_000300: 1.506951e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

FS
type: SiteQuality
SIO_000300: 5.762e0

QD
type: SiteQuality
SIO_000300: 1.307e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.509104e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191950464396285e-5
allele num: 16150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.325259515570934e-4
allele num: 11560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.398e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.510576e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.513382e6

FS
type: SiteQuality
SIO_000300: 2.807e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

VQSLOD
type: SiteQuality
SIO_000300: -5.556e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.036e0

MQRankSum
type: SiteQuality
SIO_000300: -1.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503422601176894e-5
allele num: 66616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 1.515035e6

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.416e1

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216989168796398e-4
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.123789764868603e-3
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.861003861003861e-4
allele num: 10360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000840235265874e-5
allele num: 66648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.515954e6

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.893518518518518e-4
allele num: 10368
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Other
type: Population
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East Asian
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Other
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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DP
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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East Asian
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South Asian
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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Other
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MQ
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DP
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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FS
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BaseQRankSum
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VQSLOD
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QD
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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Other
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MQ
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FS
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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South Asian
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East Asian
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European (Finnish)
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Other
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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DP
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FS
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Finnish)
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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FS
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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South Asian
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Other
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East Asian
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allele frequency: 1.155535012710885e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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MQ
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11578
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African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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FS
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DP
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: 1.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.465e0

ReadPosRankSum
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SIO_000300: 2.14e0

BaseQRankSum
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MQ
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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DP
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66722
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Latino
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East Asian
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European (Finnish)
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South Asian
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Other
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African
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VQSLOD
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DP
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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MQRankSum
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
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GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 9.055999999999999e0

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
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SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.518935e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
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African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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SIO_000300: 5.92e1

QD
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SIO_000300: 1.194e1

BaseQRankSum
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SIO_000300: -6.889999999999999e-1

DP
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SIO_000300: 1.519196e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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BaseQRankSum
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SIO_000300: -3.061e0

MQRankSum
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SIO_000300: 1.36e0

ReadPosRankSum
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SIO_000300: 1.88e0

QD
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SIO_000300: 1.478e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 2.502e0

BaseQRankSum
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SIO_000300: 5.93e0

QD
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VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.519751e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.861e1

FS
type: SiteQuality
SIO_000300: 2.785e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.073e1

VQSLOD
type: SiteQuality
SIO_000300: -2.218e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.519835e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.645e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5682
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.27e0

DP
type: SiteQuality
SIO_000300: 1.520229e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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FS
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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African
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South Asian
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Other
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

ClippingRankSum
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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African
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allele frequency: 9.611687812379854e-5
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
type: SiteQuality
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QD
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DP
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 1.441e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 1.521381e6

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.521571e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.885e1

QD
type: SiteQuality
SIO_000300: 1.268e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.951e0

VQSLOD
type: SiteQuality
SIO_000300: 4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 3.186e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.284e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.522148e6

QD
type: SiteQuality
SIO_000300: 1.15e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.522014e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.116e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.838e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.52215e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQRankSum
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.19e-1

DP
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SIO_000300: 1.522049e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

Latino
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.245e0

DP
type: SiteQuality
SIO_000300: 1.5222e6

QD
type: SiteQuality
SIO_000300: 1.396e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.522188e6

QD
type: SiteQuality
SIO_000300: 1.608e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e0

FS
type: SiteQuality
SIO_000300: 9.491e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.827e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.522709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 8.503e0

QD
type: SiteQuality
SIO_000300: 1.127e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1