16-840422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840422
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840422
    reference: chr 16
allele count: 3
allele frequency: 2.601141033866856e-5
allele num: 115334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+23C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+23C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16930
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

16-840423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840423
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840423
    reference: chr 16
allele count: 1
allele frequency: 8.668816533166892e-6
allele num: 115356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+24C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+24C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-840428-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840428
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840428
    reference: chr 16
allele count: 6
allele frequency: 5.208875924575477e-5
allele num: 115188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+29G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+29G>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14725
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23337
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-840431-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840431
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840431
    reference: chr 16
allele count: 1
allele frequency: 8.688097306689835e-6
allele num: 115100
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+32C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+32C>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-840434-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840434
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840434
    reference: chr 16
allele count: 9
allele frequency: 7.83630822812364e-5
allele num: 114850
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+35T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+35T>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15554
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-840435-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840435
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840435
    reference: chr 16
allele count: 1
allele frequency: 8.707615680674318e-6
allele num: 114842
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+36G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+36G>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-840440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840440
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840440
    reference: chr 16
allele count: 1
allele frequency: 8.726155779332973e-6
allele num: 114598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+41C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

16-840442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840442
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840442
    reference: chr 16
allele count: 4
allele frequency: 3.493205714884549e-5
allele num: 114508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+43C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+43C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11484
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

16-840446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840446
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840446
    reference: chr 16
allele count: 1
allele frequency: 8.751050126015123e-6
allele num: 114272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+47C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17739
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-840448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840448
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840448
    reference: chr 16
allele count: 1
allele frequency: 8.750743813224124e-6
allele num: 114276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.972+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.755+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.462+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.752+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.829+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.438+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.836+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.543+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.72+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.555+49C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1343+49C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

16-840476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840476
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840476
    reference: chr 16
allele count: 1
allele frequency: 1.079284218706154e-5
allele num: 92654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-55G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-49G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

16-840477-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840477
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840477
    reference: chr 16
allele count: 1
allele frequency: 1.087287435306398e-5
allele num: 91972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-48G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-54G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-48G>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

16-840478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840478
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840478
    reference: chr 16
allele count: 2
allele frequency: 2.188040172417566e-5
allele num: 91406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-53C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-47C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

16-840479-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840479
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840479
    reference: chr 16
allele count: 1
allele frequency: 1.093445885363133e-5
allele num: 91454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-46A>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-52A>G
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-840480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840480
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840480
    reference: chr 16
allele count: 1
allele frequency: 1.096852034660524e-5
allele num: 91170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-51T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-45T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-45T>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

16-840482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840482
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840482
    reference: chr 16
allele count: 2
allele frequency: 2.223457476375764e-5
allele num: 89950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-43G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-49G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-43G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

16-840483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840483
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840483
    reference: chr 16
allele count: 1
allele frequency: 1.110987668036885e-5
allele num: 90010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-48T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-42T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-42T>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17759
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

16-840484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840484
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840484
    reference: chr 16
allele count: 58
allele frequency: 6.470325747434181e-4
allele num: 89640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-47C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-41C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-41C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17713
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-840485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840485
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840485
    reference: chr 16
allele count: 1
allele frequency: 1.119219232663294e-5
allele num: 89348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-40C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-46C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-40C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-840486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840486
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840486
    reference: chr 16
allele count: 1581
allele frequency: 1.776723905421199e-2
allele num: 88984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-45C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-39C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-39C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 7.5e0
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 2.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 17917
  bin: 1.25e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 1.75e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 2.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 21
num of homozygotes: 93
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-840489-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840489
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840489
    reference: chr 16
allele count: 1
allele frequency: 1.145869141744013e-5
allele num: 87270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-42C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-36C>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-36C>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

16-840489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840489
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840489
    reference: chr 16
allele count: 1
allele frequency: 1.145869141744013e-5
allele num: 87270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-36C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-42C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14577
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22692
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-840490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840490
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840490
    reference: chr 16
allele count: 3
allele frequency: 3.444316877152698e-5
allele num: 87100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-41G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-35G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-35G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10421
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4858
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

16-840490-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840490
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840490
    reference: chr 16
allele count: 5
allele frequency: 5.74052812858783e-5
allele num: 87100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-41G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-35G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-35G>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10421
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-840507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840507
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840507
    reference: chr 16
allele count: 2
allele frequency: 2.416918429003021e-5
allele num: 82750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-18G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-24G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-18G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16608
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-840510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840510
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840510
    reference: chr 16
allele count: 1
allele frequency: 1.219750195160031e-5
allele num: 81984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-15C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-21C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-15C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

16-840511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840511
    reference: chr 16
allele count: 9
allele frequency: 1.100029334115576e-4
allele num: 81816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-20G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-14G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-14G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5526
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-840513-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840513
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840513
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 81246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-18G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-12G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-12G>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20167
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-840514-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840514
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840514
    reference: chr 16
allele count: 1
allele frequency: 1.24001785625713e-5
allele num: 80644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-11G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-17G>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-11G>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

16-840516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840516
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840516
    reference: chr 16
allele count: 2
allele frequency: 2.488057324840764e-5
allele num: 80384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-9C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-15C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20425
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

16-840517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840517
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840517
    reference: chr 16
allele count: 51
allele frequency: 6.372610271148319e-4
allele num: 80030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-8C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-14C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-8C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20496
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17485
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.753-8C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

16-840519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840519
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840519
    reference: chr 16
allele count: 1
allele frequency: 1.250062503125156e-5
allele num: 79996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-12C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-6C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-6C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.753-6C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

16-840521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840521
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840521
    reference: chr 16
allele count: 1
allele frequency: 1.25827314593452e-5
allele num: 79474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.439-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.73-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.973-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-10C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.556-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.756-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.463-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.837-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.544-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.830-4C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.753-4C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20631
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.753-4C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

16-840526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840526
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840526
    reference: chr 16
allele count: 6
allele frequency: 7.684229399861684e-5
allele num: 78082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.557C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.831C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.838C>T
  hgvsp: ENSP00000406252.2:p.Leu280Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.74C>T
  hgvsp: ENST00000569270.1:c.74C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.440C>T
  hgvsp: ENSP00000412015.1:p.Leu148Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344-5C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.545C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.757C>T
  hgvsp: ENSP00000399111.1:p.Leu253Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.974C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.754C>T
  hgvsp: ENSP00000262315.9:p.Leu252Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.464C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21010
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18153
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu252Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-840531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840531
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840531
    reference: chr 16
allele count: 188
allele frequency: 2.459960221919816e-3
allele num: 76424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.762G>A
  hgvsp: ENST00000440239.1:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.562G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.445G>A
  hgvsp: ENST00000426047.1:c.445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.79G>A
  hgvsp: ENSP00000454679.1:p.Gly27Asp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.550G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.759G>A
  hgvsp: ENST00000262315.9:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.843G>A
  hgvsp: ENST00000455171.2:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1344G>A
  hgvsp: ENST00000317063.6:c.1344G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.836G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.979G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.469G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 21084
  bin: 1.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Gly27Asp
num of homozygotes: 2
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

16-840532-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840532
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840532
    reference: chr 16
allele count: 97
allele frequency: 1.272665249678554e-3
allele num: 76218
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.760T>C
  hgvsp: ENSP00000262315.9:p.Ser254Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.980T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.80T>C
  hgvsp: ENST00000569270.1:c.80T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1345T>C
  hgvsp: ENSP00000313029.6:p.Ser449Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.844T>C
  hgvsp: ENSP00000406252.2:p.Ser282Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.446T>C
  hgvsp: ENSP00000412015.1:p.Ser150Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.763T>C
  hgvsp: ENSP00000399111.1:p.Ser255Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.837T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.551T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.563T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.470T>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18906
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21078
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 2.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
hgvs: p.Ser254Pro
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

16-840533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840533
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840533
    reference: chr 16
allele count: 4
allele frequency: 5.317451877060512e-5
allele num: 75224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.981C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.552C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1346C>T
  hgvsp: ENSP00000313029.6:p.Ser449Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.471C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.845C>T
  hgvsp: ENSP00000406252.2:p.Ser282Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.764C>T
  hgvsp: ENSP00000399111.1:p.Ser255Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.564C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.81C>T
  hgvsp: ENSP00000454679.1:p.Arg28Trp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.761C>T
  hgvsp: ENSP00000262315.9:p.Ser254Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.447C>T
  hgvsp: ENSP00000412015.1:p.Ser150Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.838C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21006
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser254Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-840534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840534
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840534
    reference: chr 16
allele count: 6
allele frequency: 8.015817880617752e-5
allele num: 74852
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.762G>A
  hgvsp: ENST00000262315.9:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.565G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.82G>A
  hgvsp: ENSP00000454679.1:p.Arg28Gln
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.472G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.982G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.553G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1347G>A
  hgvsp: ENST00000317063.6:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.765G>A
  hgvsp: ENST00000440239.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.839G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.448G>A
  hgvsp: ENST00000426047.1:c.448G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.846G>A
  hgvsp: ENST00000455171.2:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20985
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19121
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg28Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-840534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840534
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840534
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 74852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.846G>T
  hgvsp: ENST00000455171.2:c.846G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.553G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.82G>T
  hgvsp: ENSP00000454679.1:p.Arg28Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.448G>T
  hgvsp: ENST00000426047.1:c.448G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.472G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.565G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1347G>T
  hgvsp: ENST00000317063.6:c.1347G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.839G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.762G>T
  hgvsp: ENST00000262315.9:c.762G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.765G>T
  hgvsp: ENST00000440239.1:c.765G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.982G>T
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19121
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg28Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-840536-GGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840536
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840533
    reference: chr 16
allele count: 7
allele frequency: 9.376088295962924e-5
allele num: 74658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1358_1360delAGG
  hgvsp: ENSP00000313029.6:p.Glu453del
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.993_995delAGG
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.850_852delAGG
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.857_859delAGG
  hgvsp: ENSP00000406252.2:p.Glu286del
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.576_578delAGG
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.93_95delAGG
  hgvsp: ENSP00000454679.1:p.Arg32del
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.564_566delAGG
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.773_775delAGG
  hgvsp: ENSP00000262315.9:p.Glu258del
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.459_461delAGG
  hgvsp: ENSP00000412015.1:p.Glu154del
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.776_778delAGG
  hgvsp: ENSP00000399111.1:p.Glu259del
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.483_485delAGG
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20992
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19413
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu258del
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GGGA
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-840543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840543
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840543
    reference: chr 16
allele count: 3
allele frequency: 4.091764641697809e-5
allele num: 73318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1356G>A
  hgvsp: ENST00000317063.6:c.1356G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.771G>A
  hgvsp: ENST00000262315.9:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.574G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.774G>A
  hgvsp: ENST00000440239.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.562G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.481G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.855G>A
  hgvsp: ENST00000455171.2:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.457G>A
  hgvsp: ENST00000426047.1:c.457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.91G>A
  hgvsp: ENSP00000454679.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.848G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.991G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20762
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg31Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

16-840544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840544
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840544
    reference: chr 16
allele count: 2
allele frequency: 2.732613745047138e-5
allele num: 73190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.849G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.772G>A
  hgvsp: ENSP00000262315.9:p.Glu258Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.856G>A
  hgvsp: ENSP00000406252.2:p.Glu286Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.482G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.458G>A
  hgvsp: ENSP00000412015.1:p.Glu154Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.575G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.775G>A
  hgvsp: ENSP00000399111.1:p.Glu259Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1357G>A
  hgvsp: ENSP00000313029.6:p.Glu453Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.992G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.92G>A
  hgvsp: ENST00000569270.1:c.92G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.563G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20099
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu258Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

16-840548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840548
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840548
    reference: chr 16
allele count: 28
allele frequency: 3.897333110628584e-4
allele num: 71844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000484349
  gene symbol: CHTF18
  hgvsc: ENST00000484349.1:n.567C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.853C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.779C>T
  hgvsp: ENSP00000399111.1:p.Ala260Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.860C>T
  hgvsp: ENSP00000406252.2:p.Ala287Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.486C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.96C>T
  hgvsp: ENSP00000454679.1:p.Gln33Ter
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.462C>T
  hgvsp: ENSP00000412015.1:p.Ala155Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1361C>T
  hgvsp: ENSP00000313029.6:p.Ala454Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.776C>T
  hgvsp: ENSP00000262315.9:p.Ala259Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.996C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.579C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20368
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20681
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gln33Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-840551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840551
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840551
    reference: chr 16
allele count: 1
allele frequency: 1.401188207600045e-5
allele num: 71368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1364C>T
  hgvsp: ENSP00000313029.6:p.Ala455Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.489C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.99C>T
  hgvsp: ENSP00000454679.1:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.465C>T
  hgvsp: ENSP00000412015.1:p.Ala156Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.782C>T
  hgvsp: ENSP00000399111.1:p.Ala261Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.856C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.779C>T
  hgvsp: ENSP00000262315.9:p.Ala260Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.999C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.582C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.863C>T
  hgvsp: ENSP00000406252.2:p.Ala288Val
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala260Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

16-840555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840555
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840555
    reference: chr 16
allele count: 1
allele frequency: 1.434390957599403e-5
allele num: 69716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1003G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.469G>A
  hgvsp: ENST00000426047.1:c.469G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1368G>A
  hgvsp: ENST00000317063.6:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.103G>A
  hgvsp: ENSP00000454679.1:p.Ser35Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.783G>A
  hgvsp: ENST00000262315.9:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.493G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.786G>A
  hgvsp: ENST00000440239.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.586G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.860G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.867G>A
  hgvsp: ENST00000455171.2:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20951
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20377
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser35Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

16-840557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840557
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840557
    reference: chr 16
allele count: 4
allele frequency: 5.706948209444999e-5
allele num: 70090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.869C>T
  hgvsp: ENSP00000406252.2:p.Pro290Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.788C>T
  hgvsp: ENSP00000399111.1:p.Pro263Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1370C>T
  hgvsp: ENSP00000313029.6:p.Pro457Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1005C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.785C>T
  hgvsp: ENSP00000262315.9:p.Pro262Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.471C>T
  hgvsp: ENSP00000412015.1:p.Pro158Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.495C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.862C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.588C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.105C>T
  hgvsp: ENSP00000454679.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20250
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro262Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

16-840559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840559
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840559
    reference: chr 16
allele count: 1
allele frequency: 1.425923285327249e-5
allele num: 70130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.473T>C
  hgvsp: ENST00000426047.1:c.473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.864T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.787T>C
  hgvsp: ENST00000262315.9:c.787T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.790T>C
  hgvsp: ENST00000440239.1:c.790T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.497T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.590T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.107T>C
  hgvsp: ENST00000569270.1:c.107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1372T>C
  hgvsp: ENST00000317063.6:c.1372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1007T>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.871T>C
  hgvsp: ENST00000455171.2:c.871T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6414
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu263Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

16-840561-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840561
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840561
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 69230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.499G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1374G>A
  hgvsp: ENST00000317063.6:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.873G>A
  hgvsp: ENST00000455171.2:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.792G>A
  hgvsp: ENST00000440239.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1009G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.789G>A
  hgvsp: ENST00000262315.9:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.592G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.109G>A
  hgvsp: ENSP00000454679.1:p.Trp37Ter
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.866G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.475G>A
  hgvsp: ENST00000426047.1:c.475G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21369
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Trp37Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

16-840565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840565
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840565
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 68988
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.793G>A
  hgvsp: ENSP00000262315.9:p.Ala265Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.113G>A
  hgvsp: ENST00000569270.1:c.113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.596G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.796G>A
  hgvsp: ENSP00000399111.1:p.Ala266Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1378G>A
  hgvsp: ENSP00000313029.6:p.Ala460Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.877G>A
  hgvsp: ENSP00000406252.2:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.870G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.479G>A
  hgvsp: ENSP00000412015.1:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1013G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.503G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21654
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala265Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

16-840566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840566
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840566
    reference: chr 16
allele count: 2
allele frequency: 2.909090909090909e-5
allele num: 68750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1014C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.878C>T
  hgvsp: ENSP00000406252.2:p.Ala293Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1379C>T
  hgvsp: ENSP00000313029.6:p.Ala460Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.871C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.797C>T
  hgvsp: ENSP00000399111.1:p.Ala266Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.114C>T
  hgvsp: ENSP00000454679.1:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.794C>T
  hgvsp: ENSP00000262315.9:p.Ala265Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.504C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.597C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.480C>T
  hgvsp: ENSP00000412015.1:p.Ala161Val
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21654
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19776
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala265Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

16-840568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840568
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840568
    reference: chr 16
allele count: 1
allele frequency: 1.450705042650728e-5
allele num: 68932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.116C>T
  hgvsp: ENST00000569270.1:c.116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1381C>T
  hgvsp: ENSP00000313029.6:p.Pro461Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.506C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.880C>T
  hgvsp: ENSP00000406252.2:p.Pro294Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.799C>T
  hgvsp: ENSP00000399111.1:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.796C>T
  hgvsp: ENSP00000262315.9:p.Pro266Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.482C>T
  hgvsp: ENSP00000412015.1:p.Pro162Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.599C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1016C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.873C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19706
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro266Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-840569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840569
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840569
    reference: chr 16
allele count: 946
allele frequency: 1.373841819396439e-2
allele num: 68858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.800C>T
  hgvsp: ENSP00000399111.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.117C>T
  hgvsp: ENST00000569270.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.600C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.874C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.507C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.797C>T
  hgvsp: ENSP00000262315.9:p.Pro266Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.483C>T
  hgvsp: ENSP00000412015.1:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.881C>T
  hgvsp: ENSP00000406252.2:p.Pro294Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1017C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1382C>T
  hgvsp: ENSP00000313029.6:p.Pro461Leu
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21761
  bin: 7.5e0
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 1.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 19639
  bin: 1.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 2.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5711
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 35
hgvs: p.Pro266Leu
num of homozygotes: 7
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

16-840573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840573
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840573
    reference: chr 16
allele count: 7
allele frequency: 1.025040269439157e-4
allele num: 68290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.804G>A
  hgvsp: ENST00000440239.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.878G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.604G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1021G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.801G>A
  hgvsp: ENST00000262315.9:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.885G>A
  hgvsp: ENST00000455171.2:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.121G>A
  hgvsp: ENSP00000454679.1:p.Arg41Lys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1386G>A
  hgvsp: ENST00000317063.6:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.511G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.487G>A
  hgvsp: ENST00000426047.1:c.487G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19641
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22055
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg41Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

16-840573-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840573
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840573
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 68290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.804G>T
  hgvsp: ENSP00000399111.1:p.Glu268Asp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.604G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.801G>T
  hgvsp: ENSP00000262315.9:p.Glu267Asp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1021G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1386G>T
  hgvsp: ENSP00000313029.6:p.Glu462Asp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.511G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.121G>T
  hgvsp: ENSP00000454679.1:p.Arg41Met
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.885G>T
  hgvsp: ENSP00000406252.2:p.Glu295Asp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.487G>T
  hgvsp: ENSP00000412015.1:p.Glu163Asp
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.878G>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22055
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu267Asp
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

16-840579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840579
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840579
    reference: chr 16
allele count: 32
allele frequency: 4.731208232302324e-4
allele num: 67636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1392G>A
  hgvsp: ENST00000317063.6:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.807G>A
  hgvsp: ENST00000262315.9:c.807G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.810G>A
  hgvsp: ENST00000440239.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.517G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.127G>A
  hgvsp: ENSP00000454679.1:p.Ser43Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.891G>A
  hgvsp: ENST00000455171.2:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.493G>A
  hgvsp: ENST00000426047.1:c.493G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.884G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1027G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.610G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19646
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22286
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ser43Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

16-840580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840580
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840580
    reference: chr 16
allele count: 51
allele frequency: 7.59199714183637e-4
allele num: 67176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1393C>T
  hgvsp: ENSP00000313029.6:p.Pro465Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1028C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.808C>T
  hgvsp: ENSP00000262315.9:p.Pro270Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.811C>T
  hgvsp: ENSP00000399111.1:p.Pro271Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.892C>T
  hgvsp: ENSP00000406252.2:p.Pro298Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.518C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.128C>T
  hgvsp: ENST00000569270.1:c.128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.494C>T
  hgvsp: ENSP00000412015.1:p.Pro166Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.885C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.611C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22220
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19640
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 3
hgvs: p.Pro270Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

16-840581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840581
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840581
    reference: chr 16
allele count: 1
allele frequency: 1.480823337775803e-5
allele num: 67530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.495C>T
  hgvsp: ENSP00000412015.1:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.893C>T
  hgvsp: ENSP00000406252.2:p.Pro298Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1029C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1394C>T
  hgvsp: ENSP00000313029.6:p.Pro465Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.809C>T
  hgvsp: ENSP00000262315.9:p.Pro270Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.129C>T
  hgvsp: ENSP00000454679.1:p.Arg44Ter
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.812C>T
  hgvsp: ENSP00000399111.1:p.Pro271Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.519C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.612C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.886C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19640
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg44Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-840582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840582
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840582
    reference: chr 16
allele count: 5
allele frequency: 7.387925175093827e-5
allele num: 67678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.520G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.130G>A
  hgvsp: ENSP00000454679.1:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1030G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.810G>A
  hgvsp: ENST00000262315.9:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.813G>A
  hgvsp: ENST00000440239.1:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.887G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.613G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.496G>A
  hgvsp: ENST00000426047.1:c.496G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.894G>A
  hgvsp: ENST00000455171.2:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1395G>A
  hgvsp: ENST00000317063.6:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19594
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg44Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

16-840588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840588
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840588
    reference: chr 16
allele count: 3
allele frequency: 4.438789098333975e-5
allele num: 67586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.893C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.619C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.136C>T
  hgvsp: ENSP00000454679.1:p.Thr46Met
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1036C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.502C>T
  hgvsp: ENST00000426047.1:c.502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1401C>T
  hgvsp: ENST00000317063.6:c.1401C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.816C>T
  hgvsp: ENST00000262315.9:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.819C>T
  hgvsp: ENST00000440239.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.526C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.900C>T
  hgvsp: ENST00000455171.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22645
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19441
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Thr46Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-840589-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840589
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840589
    reference: chr 16
allele count: 1
allele frequency: 1.474013148197282e-5
allele num: 67842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.527G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.620G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.137G>T
  hgvsp: ENST00000569270.1:c.137G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1402G>T
  hgvsp: ENSP00000313029.6:p.Gly468Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.820G>T
  hgvsp: ENSP00000399111.1:p.Gly274Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1037G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.901G>T
  hgvsp: ENSP00000406252.2:p.Gly301Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.817G>T
  hgvsp: ENSP00000262315.9:p.Gly273Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.894G>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.503G>T
  hgvsp: ENSP00000412015.1:p.Gly169Cys
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly273Cys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/16-840593-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840593
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840593
    reference: chr 16
allele count: 1
allele frequency: 1.456367237562624e-5
allele num: 68664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.905A>C
  hgvsp: ENSP00000406252.2:p.Gln302Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1406A>C
  hgvsp: ENSP00000313029.6:p.Gln469Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.821A>C
  hgvsp: ENSP00000262315.9:p.Gln274Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.141A>C
  hgvsp: ENSP00000454679.1:p.Lys48Gln
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.824A>C
  hgvsp: ENSP00000399111.1:p.Gln275Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.898A>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.507A>C
  hgvsp: ENSP00000412015.1:p.Gln170Pro
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.531A>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1041A>C
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.624A>C
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln274Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

16-840595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840595
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840595
    reference: chr 16
allele count: 2
allele frequency: 2.922694724536022e-5
allele num: 68430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.533G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1408G>A
  hgvsp: ENSP00000313029.6:p.Asp470Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.509G>A
  hgvsp: ENSP00000412015.1:p.Asp171Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.143G>A
  hgvsp: ENST00000569270.1:c.143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.626G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.823G>A
  hgvsp: ENSP00000262315.9:p.Asp275Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1043G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.826G>A
  hgvsp: ENSP00000399111.1:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.907G>A
  hgvsp: ENSP00000406252.2:p.Asp303Asn
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.900G>A
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22691
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19399
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp275Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

16-840597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840597
    reference: chr 16
allele count: 6505
allele frequency: 9.212576122362272e-2
allele num: 70610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.828C>T
  hgvsp: ENST00000440239.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.145C>T
  hgvsp: ENSP00000454679.1:p.Thr49Met
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.511C>T
  hgvsp: ENST00000426047.1:c.511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.825C>T
  hgvsp: ENST00000262315.9:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.909C>T
  hgvsp: ENST00000455171.2:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1410C>T
  hgvsp: ENST00000317063.6:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1045C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.535C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.902C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.628C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 2.25e1
  variant carriers: 758
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 2.75e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 19616
  bin: 1.25e1
  variant carriers: 2719
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 1.75e1
  variant carriers: 1886
genotype depth: GenotypeDepth
  all individuals: 21279
  bin: 7.5e0
  variant carriers: 1105
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 2.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 105
hgvs: p.Thr49Met
num of homozygotes: 504
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-840598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840598
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840598
    reference: chr 16
allele count: 3
allele frequency: 4.309230371455658e-5
allele num: 69618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.512G>A
  hgvsp: ENSP00000412015.1:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.903G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1411G>A
  hgvsp: ENSP00000313029.6:p.Ala471Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1046G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.146G>A
  hgvsp: ENST00000569270.1:c.146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.910G>A
  hgvsp: ENSP00000406252.2:p.Ala304Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.826G>A
  hgvsp: ENSP00000262315.9:p.Ala276Thr
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.629G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.536G>A
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.829G>A
  hgvsp: ENSP00000399111.1:p.Ala277Thr
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19832
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala276Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

16-840599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840599
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840599
    reference: chr 16
allele count: 5195
allele frequency: 7.267970564369457e-2
allele num: 71478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1412C>T
  hgvsp: ENSP00000313029.6:p.Ala471Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.904C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.827C>T
  hgvsp: ENSP00000262315.9:p.Ala276Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.537C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.830C>T
  hgvsp: ENSP00000399111.1:p.Ala277Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1047C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.911C>T
  hgvsp: ENSP00000406252.2:p.Ala304Val
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.630C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.147C>T
  hgvsp: ENSP00000454679.1:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.513C>T
  hgvsp: ENSP00000412015.1:p.Ala172Val
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 20037
  bin: 1.25e1
  variant carriers: 2145
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 21166
  bin: 7.5e0
  variant carriers: 1008
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 1.75e1
  variant carriers: 1499
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 2.25e1
  variant carriers: 605
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 2.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 4.25e1
  variant carriers: 38
hgvs: p.Ala276Val
num of homozygotes: 297
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

16-840600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840600
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840600
    reference: chr 16
allele count: 34
allele frequency: 4.835452399237705e-4
allele num: 70314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.831C>T
  hgvsp: ENST00000440239.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.514C>T
  hgvsp: ENST00000426047.1:c.514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1048C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1413C>T
  hgvsp: ENST00000317063.6:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.905C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.912C>T
  hgvsp: ENST00000455171.2:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.148C>T
  hgvsp: ENSP00000454679.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.828C>T
  hgvsp: ENST00000262315.9:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.631C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.538C>T
  variant of: http://identifiers.org/hgnc/18435
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21882
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro50Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

16-840602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840602
    reference: chr 16
allele count: 4
allele frequency: 5.709717939933767e-5
allele num: 70056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.150C>G
  hgvsp: ENSP00000454679.1:p.Pro51Ala
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.516C>G
  hgvsp: ENSP00000412015.1:p.Ser173Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1415C>G
  hgvsp: ENSP00000313029.6:p.Ser472Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.914C>G
  hgvsp: ENSP00000406252.2:p.Ser305Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.833C>G
  hgvsp: ENSP00000399111.1:p.Ser278Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1050C>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.633C>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.540C>G
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.830C>G
  hgvsp: ENSP00000262315.9:p.Ser277Cys
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.907C>G
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20326
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser277Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-840602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 840602
    reference: chr 16
allele count: 2
allele frequency: 2.854858969966883e-5
allele num: 70056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000491530
  gene symbol: CHTF18
  hgvsc: ENST00000491530.1:n.540C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000313029
  ensembl transcript: ENST00000317063
  gene symbol: CHTF18
  hgvsc: ENST00000317063.6:c.1415C>T
  hgvsp: ENSP00000313029.6:p.Ser472Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000454679
  ensembl transcript: ENST00000569270
  gene symbol: CHTF18
  hgvsc: ENST00000569270.1:c.150C>T
  hgvsp: ENSP00000454679.1:p.Pro51Ser
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000412015
  ensembl transcript: ENST00000426047
  gene symbol: CHTF18
  hgvsc: ENST00000426047.1:c.516C>T
  hgvsp: ENSP00000412015.1:p.Ser173Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000399111
  ensembl transcript: ENST00000440239
  gene symbol: CHTF18
  hgvsc: ENST00000440239.1:c.833C>T
  hgvsp: ENSP00000399111.1:p.Ser278Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000471202
  gene symbol: CHTF18
  hgvsc: ENST00000471202.1:n.1050C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000262315
  ensembl transcript: ENST00000262315
  gene symbol: CHTF18
  hgvsc: ENST00000262315.9:c.830C>T
  hgvsp: ENSP00000262315.9:p.Ser277Phe
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000464728
  gene symbol: CHTF18
  hgvsc: ENST00000464728.1:n.633C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127586
  ensembl transcript: ENST00000479976
  gene symbol: CHTF18
  hgvsc: ENST00000479976.1:n.907C>T
  variant of: http://identifiers.org/hgnc/18435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127586
  ensembl protein: ENSP00000406252
  ensembl transcript: ENST00000455171
  gene symbol: CHTF18
  hgvsc: ENST00000455171.2:c.914C>T
  hgvsp: ENSP00000406252.2:p.Ser305Phe
  variant of: http://identifiers.org/hgnc/18435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser277Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

GenotypeQuality
all individuals: 591
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3715
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.724855891895298e-5
allele num: 63494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 1.471277e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.346e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 1.856e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.53e-1

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3468
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.556178026766262e-4
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.557e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.471396e6

FS
type: SiteQuality
SIO_000300: 1.1792e1

QD
type: SiteQuality
SIO_000300: 1.015e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.459842966606754e-5
allele num: 63426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.089e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 2.672e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 1.444406e6

GenotypeQuality
all individuals: 2479
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23287
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9066
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.192179303767287e-4
allele num: 8388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.437969e6

QD
type: SiteQuality
SIO_000300: 5.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.201e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.073e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 1344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4456
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.42274494925543e-4
allele num: 63258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 2.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 1.41978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
all individuals: 660
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.312334301224592e-5
allele num: 15842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63278
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.811e1

DP
type: SiteQuality
SIO_000300: 1.419447e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 5.845e0

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.778e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.329113924050633e-5
allele num: 15800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63148
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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DP
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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SIO_000300: 5.906e1

QD
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MQRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.438e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.53196607165464e-4
allele num: 15798
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63086
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 7.04e-1

MQ
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SIO_000300: 5.928e1

BaseQRankSum
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SIO_000300: -2.216e0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.588461416272199e-5
allele num: 62954
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.705e1

FS
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

DP
type: SiteQuality
SIO_000300: 1.40127e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.806e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.351626016260163e-5
allele num: 15744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62996
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.674e0

BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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FS
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DP
type: SiteQuality
SIO_000300: 1.401986e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
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SIO_000300: 1.1e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51590
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.311991603253739e-4
allele num: 7622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
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SIO_000300: 1.259e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51228
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.488095238095238e-3
allele num: 672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.025664e6

ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -3.9e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2211
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.926804366606456e-5
allele num: 50932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 5.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.599e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.016345e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.141e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 4405
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.256281407035176e-4
allele num: 7960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12708
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 9.419e0

DP
type: SiteQuality
SIO_000300: 1.009634e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 7.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.63e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 13753
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1092
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variant carriers: 1

GenotypeQuality
all individuals: 1236
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.96927924379677e-5
allele num: 50780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.976e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.000375e6

FS
type: SiteQuality
SIO_000300: 6.219e0

VQSLOD
type: SiteQuality
SIO_000300: -5.798e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.098e0

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeQuality
all individuals: 285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 1969
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1092
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.993779408246272e-5
allele num: 50156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.000000000000001e-5
allele num: 12500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.85686e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 21063
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5083
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GenotypeQuality
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GenotypeQuality
all individuals: 12533
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GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 1250
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GenotypeQuality
all individuals: 1881
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GenotypeQuality
all individuals: 1963
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GenotypeQuality
all individuals: 596
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.281722635221738e-4
allele num: 7802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.84864e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.147e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.602e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 224
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GenotypeQuality
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variant carriers: 58

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 524
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GenotypeQuality
all individuals: 1909
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variant carriers: 0

South Asian
type: Population
allele count: 50
allele frequency: 4.017354973485457e-3
allele num: 12446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.292657704239917e-4
allele num: 7736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7428
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 9.345794392523365e-4
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.000560156843916e-5
allele num: 49986
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 9.84866e5

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 2.708e0

QD
type: SiteQuality
SIO_000300: 1.376e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12374
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.562011871290222e-4
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.79691e5

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.147e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 6

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 17

GenotypeQuality
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variant carriers: 21

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 2918
bin: 3.75e1
variant carriers: 10

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2277
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variant carriers: 1388

GenotypeQuality
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variant carriers: 21

GenotypeQuality
all individuals: 4849
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variant carriers: 8

GenotypeQuality
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variant carriers: 13

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 543
bin: 7.25e1
variant carriers: 17

Latino
type: Population
allele count: 144
allele frequency: 1.878914405010438e-2
allele num: 7664
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 145
allele frequency: 2.920443101711984e-3
allele num: 49650
num of homozygotes: 1

Other
type: Population
allele count: 10
allele frequency: 1.538461538461539e-2
allele num: 650
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.571338780641106e-4
allele num: 6364
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.86084142394822e-3
allele num: 12360
num of homozygotes: 2

African
type: Population
allele count: 1258
allele frequency: 1.705069124423963e-1
allele num: 7378
num of homozygotes: 88

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.013e0

DP
type: SiteQuality
SIO_000300: 9.76051e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.660000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
all individuals: 22692
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
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GenotypeQuality
all individuals: 2908
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 294
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GenotypeQuality
all individuals: 503
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GenotypeQuality
all individuals: 1004
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 1099
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.220979940808945e-5
allele num: 12164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 9.54146e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.033e1

GenotypeQuality
all individuals: 12832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.220979940808945e-5
allele num: 12164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.033e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 9.54146e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1704
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.139237915933369e-5
allele num: 48866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.49552e5

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.883e1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12182
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.75310642895732e-4
allele num: 7404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 9.49552e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 5.883e1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 1092
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46524
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.888503755054881e-4
allele num: 6924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.683e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 8.90074e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.622e-1

FS
type: SiteQuality
SIO_000300: 4.706e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
type: SiteQuality
SIO_000300: 8.82639e5

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 396
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.95626657392514e-4
allele num: 46006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 1.268e1

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-3

FS
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 8.80832e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.75323e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

FS
type: SiteQuality
SIO_000300: 2.098e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

QD
type: SiteQuality
SIO_000300: 1.818e1

GenotypeQuality
all individuals: 8379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5442
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 7.5e0
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GenotypeQuality
all individuals: 25731
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5720
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.263467632412856e-4
allele num: 4418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 8.64835e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.099e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.087e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.045e1

GenotypeQuality
all individuals: 914
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.551831160769708e-4
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6662
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.93016610108948e-5
allele num: 11198
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.336e0

QD
type: SiteQuality
SIO_000300: 1.002e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 5.649e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 8.64819e5

MQ
type: SiteQuality
SIO_000300: 5.707e1

GenotypeDepth
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26093
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8466
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variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 320
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2775
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 858
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5382
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1015
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

African
type: Population
allele count: 51
allele frequency: 7.946400747896541e-3
allele num: 6418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 8.60478e5

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

FS
type: SiteQuality
SIO_000300: 5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 1.543e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 100
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5687
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variant carriers: 0

GenotypeQuality
all individuals: 1086
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variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5299
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.934953538241601e-5
allele num: 11192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.654e0

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

VQSLOD
type: SiteQuality
SIO_000300: -1.016e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e0

DP
type: SiteQuality
SIO_000300: 8.60661e5

GenotypeDepth
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 965
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variant carriers: 1

GenotypeQuality
all individuals: 9080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 2714
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5747
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.236536052961174e-5
allele num: 44712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.55044e5

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

QD
type: SiteQuality
SIO_000300: 2.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeDepth
all individuals: 338
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
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variant carriers: 8

GenotypeQuality
all individuals: 7882
bin: 6.25e1
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GenotypeQuality
all individuals: 1055
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
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GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
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variant carriers: 0

GenotypeQuality
all individuals: 323
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GenotypeQuality
all individuals: 784
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1509
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.5e0
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GenotypeQuality
all individuals: 5474
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5944
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 7.763975155279503e-4
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.147457006952067e-5
allele num: 10932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

FS
type: SiteQuality
SIO_000300: 3.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.1e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

DP
type: SiteQuality
SIO_000300: 8.37897e5

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2018
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 868
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6643
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variant carriers: 3

GenotypeQuality
all individuals: 323
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variant carriers: 5

GenotypeQuality
all individuals: 2726
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 293
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variant carriers: 2

GenotypeQuality
all individuals: 1204
bin: 1.25e1
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GenotypeQuality
all individuals: 1115
bin: 9.75e1
variant carriers: 175

GenotypeQuality
all individuals: 26671
bin: 2.25e1
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GenotypeQuality
all individuals: 111
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variant carriers: 8

GenotypeQuality
all individuals: 2743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6008
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 958
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 5593
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 180
allele frequency: 2.914507772020725e-2
allele num: 6176
num of homozygotes: 2

Latino
type: Population
allele count: 3
allele frequency: 4.809233728759218e-4
allele num: 6238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.650730164635848e-5
allele num: 43004
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.274717121127805e-5
allele num: 10782
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.584229390681004e-3
allele num: 558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.301e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 8.20706e5

GenotypeDepth
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1043
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 26858
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2691
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5997
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2756
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6898
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1903
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 926
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

African
type: Population
allele count: 96
allele frequency: 1.575837163493106e-2
allele num: 6092
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 1.604106512672441e-4
allele num: 6234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

DP
type: SiteQuality
SIO_000300: 8.19745e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5955
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26883
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.074136955291455e-5
allele num: 42408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.414422895876483e-5
allele num: 10622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.065e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.17578e5

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeDepth
all individuals: 3099
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1295
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5979
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26989
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42156
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.829121086382497e-4
allele num: 10604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.289473684210526e-4
allele num: 6080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.675041876046901e-4
allele num: 5970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.14259e5

QD
type: SiteQuality
SIO_000300: 1.021e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 2.535e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeDepth
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5979
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6704
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26989
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.535e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

QD
type: SiteQuality
SIO_000300: 1.021e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 8.14259e5

GenotypeDepth
all individuals: 871
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27056
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6031
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 980
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.149047931713723e-3
allele num: 6092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42006
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.473e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.07348e5

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeDepth
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27587
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5390
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6003
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.27554930397245e-5
allele num: 41234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.875e1

DP
type: SiteQuality
SIO_000300: 7.98128e5

FS
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.415e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeDepth
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6032
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 721
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.79794910748196e-4
allele num: 5266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.04e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 7.95924e5

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeDepth
all individuals: 98
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6050
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26846
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2459
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 751
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.743983257760725e-4
allele num: 5734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 6.687472135532769e-4
allele num: 40374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
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South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.104e0

BaseQRankSum
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SIO_000300: -2.117e0

MQRankSum
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.109e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.491528802072952e-5
allele num: 40136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

VQSLOD
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SIO_000300: -2.018e0

InbreedingCoeff
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SIO_000300: -1.02e-2

QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.313e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

MQRankSum
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SIO_000300: -1.418e0

FS
type: SiteQuality
SIO_000300: 8.795999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

DP
type: SiteQuality
SIO_000300: 7.86648e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.796238244514106e-5
allele num: 10208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

QD
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VQSLOD
type: SiteQuality
SIO_000300: -8.413e-1

ReadPosRankSum
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SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.77521e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.087505087505087e-5
allele num: 39312
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.783803068141277e-4
allele num: 5606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

FS
type: SiteQuality
SIO_000300: 8.583e0

DP
type: SiteQuality
SIO_000300: 7.78207e5

VQSLOD
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.042e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 117
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.544011397171059e-5
allele num: 39308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 5.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 2.363e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.446e0

DP
type: SiteQuality
SIO_000300: 7.80042e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.77816e5

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3762
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.77223e5

ReadPosRankSum
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VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3744
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.101722723543889e-4
allele num: 4876
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

QD
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InbreedingCoeff
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SIO_000300: -1.03e-2

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.63e-2

FS
type: SiteQuality
SIO_000300: 5.862e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 313
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 7.76136e5

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 36

GenotypeQuality
all individuals: 6650
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 27105
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2075
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 24

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 515
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1606
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2133
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5072
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3477
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 557
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 946
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1843
bin: 9.75e1
variant carriers: 928

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 312
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 596
bin: 4.25e1
variant carriers: 1

African
type: Population
allele count: 12
allele frequency: 2.184200946487077e-3
allele num: 5494
num of homozygotes: 0

Latino
type: Population
allele count: 60
allele frequency: 1.106194690265487e-2
allele num: 5424
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 726
allele frequency: 1.88034188034188e-2
allele num: 38610
num of homozygotes: 2

South Asian
type: Population
allele count: 128
allele frequency: 1.255886970172685e-2
allele num: 10192
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 3.205128205128205e-3
allele num: 3744
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.538461538461539e-2
allele num: 520
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 7.77857e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.448e1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
all individuals: 27203
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5849
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.75e1
variant carriers: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.302567919612951e-3
allele num: 5374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3746
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

DP
type: SiteQuality
SIO_000300: 7.71663e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5849
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2449
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3746
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

DP
type: SiteQuality
SIO_000300: 7.71663e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 974
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 3348
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5672
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 641
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.871958068139274e-4
allele num: 5342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 2.169197396963124e-3
allele num: 3688
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.093802345058626e-4
allele num: 4776
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.968503937007874e-3
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5448
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.592356687898089e-3
allele num: 10048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.321842119177285e-4
allele num: 37826
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 7.66825e5

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.369e0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 689
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5878
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 935
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5180
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3604
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26435
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2277
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 756
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 984
bin: 9.75e1
variant carriers: 47

GenotypeQuality
all individuals: 299
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5871
bin: 6.25e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.703703703703704e-4
allele num: 5400
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 2.060696890221056e-3
allele num: 5338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 1.013333333333333e-3
allele num: 37500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 7.68658e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 3559
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6004
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1758
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.09819555182543e-4
allele num: 4766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.374e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

QD
type: SiteQuality
SIO_000300: 5.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 7.69468e5

GenotypeQuality
all individuals: 738
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5883
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.29829394934831e-5
allele num: 37748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.543237250554324e-4
allele num: 5412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.72745e5

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

FS
type: SiteQuality
SIO_000300: 2.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 5872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 698
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.65097290705689e-5
allele num: 37722
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.194630872483221e-4
allele num: 4768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

DP
type: SiteQuality
SIO_000300: 7.73942e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeQuality
all individuals: 28192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.645502645502646e-5
allele num: 37800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.815e1

QD
type: SiteQuality
SIO_000300: 1.508e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 1.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 7.77642e5

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5923
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.617389938753075e-5
allele num: 38206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.022e0

QD
type: SiteQuality
SIO_000300: 1.586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

DP
type: SiteQuality
SIO_000300: 7.81188e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.355e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.024e-1

GenotypeQuality
all individuals: 748
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5950
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 332
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.801152737752161e-4
allele num: 5552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.625636716903849e-5
allele num: 38086
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

DP
type: SiteQuality
SIO_000300: 7.79085e5

QD
type: SiteQuality
SIO_000300: 1.113e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 2.258e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 1168
bin: 1.25e1
variant carriers: 40

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 187

GenotypeQuality
all individuals: 653
bin: 4.75e1
variant carriers: 113

GenotypeQuality
all individuals: 6153
bin: 9.75e1
variant carriers: 5340

GenotypeQuality
all individuals: 942
bin: 6.75e1
variant carriers: 79

GenotypeQuality
all individuals: 2048
bin: 3.75e1
variant carriers: 127

GenotypeQuality
all individuals: 5183
bin: 2.75e1
variant carriers: 65

GenotypeQuality
all individuals: 4496
bin: 3.25e1
variant carriers: 119

GenotypeQuality
all individuals: 413
bin: 7.75e1
variant carriers: 130

GenotypeQuality
all individuals: 253
bin: 8.75e1
variant carriers: 160

GenotypeQuality
all individuals: 2687
bin: 7.5e0
variant carriers: 32

GenotypeQuality
all individuals: 24924
bin: 2.25e1
variant carriers: 90

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 84

GenotypeQuality
all individuals: 1765
bin: 1.75e1
variant carriers: 69

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 180

GenotypeQuality
all individuals: 5714
bin: 6.25e1
variant carriers: 87

GenotypeQuality
all individuals: 604
bin: 4.25e1
variant carriers: 63

GenotypeQuality
all individuals: 613
bin: 5.25e1
variant carriers: 117

East Asian
type: Population
allele count: 2013
allele frequency: 3.58312566749733e-1
allele num: 5618
num of homozygotes: 288

South Asian
type: Population
allele count: 1880
allele frequency: 1.778618732261116e-1
allele num: 10570
num of homozygotes: 163

Latino
type: Population
allele count: 649
allele frequency: 1.103366201972118e-1
allele num: 5882
num of homozygotes: 20

European (Finnish)
type: Population
allele count: 196
allele frequency: 5.012787723785166e-2
allele num: 3910
num of homozygotes: 3

African
type: Population
allele count: 70
allele frequency: 1.264450867052023e-2
allele num: 5536
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 1658
allele frequency: 4.299123580355754e-2
allele num: 38566
num of homozygotes: 27

Other
type: Population
allele count: 39
allele frequency: 7.386363636363637e-2
allele num: 528
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 8.007e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.501e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeQuality
all individuals: 386
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.201560468140442e-5
allele num: 38450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

QD
type: SiteQuality
SIO_000300: 1.241e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 7.86875e5

GenotypeQuality
all individuals: 5462
bin: 2.75e1
variant carriers: 61

GenotypeQuality
all individuals: 4833
bin: 3.25e1
variant carriers: 71

GenotypeQuality
all individuals: 2316
bin: 3.75e1
variant carriers: 64

GenotypeQuality
all individuals: 822
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 440
bin: 7.75e1
variant carriers: 137

GenotypeQuality
all individuals: 1107
bin: 1.25e1
variant carriers: 36

GenotypeQuality
all individuals: 957
bin: 6.75e1
variant carriers: 80

GenotypeQuality
all individuals: 25300
bin: 2.25e1
variant carriers: 82

GenotypeQuality
all individuals: 2496
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 148

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 83

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 72

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 151

GenotypeQuality
all individuals: 5298
bin: 9.75e1
variant carriers: 4517

GenotypeQuality
all individuals: 501
bin: 5.25e1
variant carriers: 68

GenotypeQuality
all individuals: 6083
bin: 6.25e1
variant carriers: 83

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 81

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 108

African
type: Population
allele count: 1022
allele frequency: 1.728687415426252e-1
allele num: 5912
num of homozygotes: 70

Latino
type: Population
allele count: 588
allele frequency: 9.667872410391319e-2
allele num: 6082
num of homozygotes: 18

East Asian
type: Population
allele count: 151
allele frequency: 2.835148328952309e-2
allele num: 5326
num of homozygotes: 3

South Asian
type: Population
allele count: 1906
allele frequency: 1.794726930320151e-1
allele num: 10620
num of homozygotes: 179

European (Non-Finnish)
type: Population
allele count: 1385
allele frequency: 3.54673495518566e-2
allele num: 39050
num of homozygotes: 26

European (Finnish)
type: Population
allele count: 99
allele frequency: 2.511415525114155e-2
allele num: 3942
num of homozygotes: 0

Other
type: Population
allele count: 44
allele frequency: 8.058608058608059e-2
allele num: 546
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 6.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.57e-2

DP
type: SiteQuality
SIO_000300: 8.03969e5

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
all individuals: 753
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2705
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 2748
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27779
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 753
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1803
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.108424022571544e-3
allele num: 9924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.574797878366548e-4
allele num: 38838
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.315649867374005e-4
allele num: 6032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.914375217542638e-3
allele num: 5746
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 7.86259e5

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 1.252e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
all individuals: 1926
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.740736918154608e-5
allele num: 38756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.745810055865922e-4
allele num: 5728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

FS
type: SiteQuality
SIO_000300: 1.4292e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 7.84774e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 517
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.160491278769739e-5
allele num: 38756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1