16-4882160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882160
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882160
    reference: chr 16
allele count: 8
allele frequency: 6.589351607801793e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+615G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.357G>A
  hgvsp: ENST00000321919.9:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+615G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.319G>A
  hgvsp: ENST00000589389.1:c.319G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.357G>A
  hgvsp: ENST00000591451.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.357G>A
  hgvsp: ENST00000381983.3:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*397G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.63G>A
  hgvsp: ENST00000587297.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.283G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg119Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

16-4882165-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882165
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882165
    reference: chr 16
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*392A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.314A>T
  hgvsp: ENSP00000466570.1:p.Ser106Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.58A>T
  hgvsp: ENSP00000467541.1:p.Ser20Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.352A>T
  hgvsp: ENSP00000322716.6:p.Ser118Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+610A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.352A>T
  hgvsp: ENSP00000468328.1:p.Ser118Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.278A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.352A>T
  hgvsp: ENSP00000371413.3:p.Ser118Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+610A>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser118Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

16-4882169-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882169
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882169
    reference: chr 16
allele count: 136
allele frequency: 1.120245135994465e-3
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.348G>A
  hgvsp: ENST00000381983.3:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*388G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.348G>A
  hgvsp: ENST00000321919.9:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.348G>A
  hgvsp: ENST00000591451.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.54G>A
  hgvsp: ENST00000587297.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.310G>A
  hgvsp: ENST00000589389.1:c.310G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.274G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+606G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+606G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu116Glu
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-4882175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882175
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882175
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.342T>C
  hgvsp: ENST00000321919.9:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.342T>C
  hgvsp: ENST00000381983.3:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.342T>C
  hgvsp: ENST00000591451.1:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+600T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.48T>C
  hgvsp: ENST00000587297.1:c.48T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*382T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.304T>C
  hgvsp: ENST00000589389.1:c.304T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.268T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+600T>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser114Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

16-4882176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882176
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882176
    reference: chr 16
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.341G>A
  hgvsp: ENSP00000468328.1:p.Ser114Asn
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+599G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.267G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.47G>A
  hgvsp: ENSP00000467541.1:p.Ser16Asn
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.303G>A
  hgvsp: ENSP00000466570.1:p.Ser102Asn
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.341G>A
  hgvsp: ENSP00000371413.3:p.Ser114Asn
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*381G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+599G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.341G>A
  hgvsp: ENSP00000322716.6:p.Ser114Asn
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser114Asn
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-4882177-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882177
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882177
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.266A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.340A>T
  hgvsp: ENSP00000371413.3:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.46A>T
  hgvsp: ENSP00000467541.1:p.Ser16Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*380A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.340A>T
  hgvsp: ENSP00000322716.6:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+598A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.340A>T
  hgvsp: ENSP00000468328.1:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.302A>T
  hgvsp: ENSP00000466570.1:p.Ser102Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+598A>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser114Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

16-4882182-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882182
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882182
    reference: chr 16
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.261A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.335A>C
  hgvsp: ENSP00000468328.1:p.Asn112Thr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.41A>C
  hgvsp: ENSP00000467541.1:p.Asn14Thr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.335A>C
  hgvsp: ENSP00000371413.3:p.Asn112Thr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+593A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.297A>C
  hgvsp: ENSP00000466570.1:p.Asn100Thr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+593A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.335A>C
  hgvsp: ENSP00000322716.6:p.Asn112Thr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*375A>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6640
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn112Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-4882186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882186
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882186
    reference: chr 16
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+589C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+589C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.331C>T
  hgvsp: ENSP00000371413.3:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.37C>T
  hgvsp: ENSP00000467541.1:p.Arg13Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.331C>T
  hgvsp: ENSP00000468328.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.293C>T
  hgvsp: ENSP00000466570.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*371C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.257C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.331C>T
  hgvsp: ENSP00000322716.6:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg111Cys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

16-4882188-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882188
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882188
    reference: chr 16
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.35G>A
  hgvsp: ENSP00000467541.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*369G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.329G>A
  hgvsp: ENSP00000371413.3:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.329G>A
  hgvsp: ENSP00000468328.1:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.255G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.291G>A
  hgvsp: ENSP00000466570.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.329G>A
  hgvsp: ENSP00000322716.6:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+587G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+587G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16246
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg110Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

16-4882190-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882190
    reference: chr 16
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.327T>A
  hgvsp: ENSP00000322716.6:p.Asn109Lys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+585T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.289T>A
  hgvsp: ENSP00000466570.1:p.Asn97Lys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.327T>A
  hgvsp: ENSP00000468328.1:p.Asn109Lys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*367T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.327T>A
  hgvsp: ENSP00000371413.3:p.Asn109Lys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.33T>A
  hgvsp: ENSP00000467541.1:p.Asn11Lys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+585T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.253T>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn109Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

16-4882192-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882192
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882192
    reference: chr 16
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.325A>C
  hgvsp: ENSP00000371413.3:p.Asn109His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.251A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.31A>C
  hgvsp: ENSP00000467541.1:p.Asn11His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.325A>C
  hgvsp: ENSP00000468328.1:p.Asn109His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.325A>C
  hgvsp: ENSP00000322716.6:p.Asn109His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+583A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*365A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+583A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.287A>C
  hgvsp: ENSP00000466570.1:p.Asn97His
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn109His
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

16-4882194-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882194
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882194
    reference: chr 16
allele count: 6
allele frequency: 4.944212798918866e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.29A>G
  hgvsp: ENSP00000467541.1:p.Lys10Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.249A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.323A>G
  hgvsp: ENSP00000371413.3:p.Lys108Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.285A>G
  hgvsp: ENSP00000466570.1:p.Lys96Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.323A>G
  hgvsp: ENSP00000322716.6:p.Lys108Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+581A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*363A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+581A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.323A>G
  hgvsp: ENSP00000468328.1:p.Lys108Arg
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys108Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-4882198-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882198
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882198
    reference: chr 16
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.319G>C
  hgvsp: ENSP00000468328.1:p.Asp107His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.319G>C
  hgvsp: ENSP00000371413.3:p.Asp107His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.245G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.281G>C
  hgvsp: ENSP00000466570.1:p.Asp95His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+577G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.25G>C
  hgvsp: ENSP00000467541.1:p.Asp9His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*359G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.319G>C
  hgvsp: ENSP00000322716.6:p.Asp107His
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+577G>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp107His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-4882207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882207
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882207
    reference: chr 16
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.310T>C
  hgvsp: ENSP00000468328.1:p.Ser104Pro
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*350T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.272T>C
  hgvsp: ENSP00000466570.1:p.Ser92Pro
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.310T>C
  hgvsp: ENSP00000371413.3:p.Ser104Pro
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.310T>C
  hgvsp: ENSP00000322716.6:p.Ser104Pro
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.236T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.16T>C
  hgvsp: ENSP00000467541.1:p.Ser6Pro
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+568T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+568T>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser104Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-4882213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882213
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882213
    reference: chr 16
allele count: 66
allele frequency: 5.446353418824578e-4
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.230C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.304C>T
  hgvsp: ENSP00000371413.3:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+562C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.304C>T
  hgvsp: ENSP00000322716.6:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.10C>T
  hgvsp: ENSP00000467541.1:p.His4Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.304C>T
  hgvsp: ENSP00000468328.1:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.266C>T
  hgvsp: ENSP00000466570.1:p.His90Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*344C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+562C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9242
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His102Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-4882214-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882214
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882214
    reference: chr 16
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.303C>G
  hgvsp: ENST00000321919.9:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+561C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.265C>G
  hgvsp: ENST00000589389.1:c.265C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.229C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.9C>G
  hgvsp: ENST00000587297.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.303C>G
  hgvsp: ENST00000591451.1:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+561C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.303C>G
  hgvsp: ENST00000381983.3:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*343C>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser101Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

16-4882215-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882215
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882215
    reference: chr 16
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+560C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.264C>G
  hgvsp: ENSP00000466570.1:p.Ser89Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.302C>G
  hgvsp: ENSP00000322716.6:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.302C>G
  hgvsp: ENSP00000468328.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.228C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+560C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.8C>G
  hgvsp: ENSP00000467541.1:p.Ser3Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.302C>G
  hgvsp: ENSP00000371413.3:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*342C>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser101Cys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

16-4882217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882217
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882217
    reference: chr 16
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.300A>G
  hgvsp: ENST00000591451.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.300A>G
  hgvsp: ENST00000321919.9:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.262A>G
  hgvsp: ENST00000589389.1:c.262A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.6A>G
  hgvsp: ENST00000587297.1:c.6A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+558A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+558A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.300A>G
  hgvsp: ENST00000381983.3:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.226A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*340A>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser100Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

16-4882220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882220
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882220
    reference: chr 16
allele count: 2
allele frequency: 1.653493832468005e-5
allele num: 120956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.297G>A
  hgvsp: ENST00000381983.3:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.223G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.297G>A
  hgvsp: ENST00000591451.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.259G>A
  hgvsp: ENST00000589389.1:c.259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.297G>A
  hgvsp: ENST00000321919.9:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+555G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.3G>A
  hgvsp: ENST00000587297.1:c.3G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*337G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+555G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: c.297G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

16-4882221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882221
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882221
    reference: chr 16
allele count: 8
allele frequency: 6.616601052039567e-5
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+554C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.222C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.258C>T
  hgvsp: ENSP00000466570.1:p.Thr87Met
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+554C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.296C>T
  hgvsp: ENSP00000468328.1:p.Thr99Met
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.296C>T
  hgvsp: ENSP00000322716.6:p.Thr99Met
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.296C>T
  hgvsp: ENSP00000371413.3:p.Thr99Met
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467541
  ensembl transcript: ENST00000587297
  gene symbol: GLYR1
  hgvsc: ENST00000587297.1:c.2C>T
  hgvsp: ENSP00000467541.1:p.Thr1?
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*336C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1?
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

16-4882229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882229
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882229
    reference: chr 16
allele count: 2
allele frequency: 1.657138122462507e-5
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-7C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-7C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-7C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-7C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+546C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+546C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-7C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-7C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: c.295-7C>T
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

16-4882236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882236
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882236
    reference: chr 16
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+539T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-14T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-14T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-14T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+539T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-14T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-14T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-14T>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5069
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

16-4882239-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882239
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882239
    reference: chr 16
allele count: 2
allele frequency: 1.661019201381968e-5
allele num: 120408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-17T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-17T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+536T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-17T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-17T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+536T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-17T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-17T>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-4882242-A-AATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882242
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882245
    reference: chr 16
allele count: 2
allele frequency: 1.662482751741451e-5
allele num: 120302
alternate allele: AATG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-23_295-21dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-23_295-21dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-23_221-21dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-23_257-21dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-23_*335-21dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+530_294+532dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+530_294+532dupCAT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-23_295-21dupCAT
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4839
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

16-4882261-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882261
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882261
    reference: chr 16
allele count: 2
allele frequency: 1.689331869245713e-5
allele num: 118390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-39C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+514C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-39C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-39C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-39C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-39C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-39C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+514C>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/16-4882262-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882262
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882262
    reference: chr 16
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-40G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-40G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+513G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-40G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+513G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-40G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-40G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-40G>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4350
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16235
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-4882262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882262
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882262
    reference: chr 16
allele count: 2
allele frequency: 1.69075999661848e-5
allele num: 118290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+513G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+513G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16235
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-4882265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882265
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882265
    reference: chr 16
allele count: 1
allele frequency: 8.50383522968859e-6
allele num: 117594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+510G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+510G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-43G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16236
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

16-4882266-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882266
    reference: chr 16
allele count: 2
allele frequency: 1.698600353308873e-5
allele num: 117744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-44A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-44A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+509A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-44A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+509A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-44A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-44A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-44A>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4827
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-4882269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882269
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882269
    reference: chr 16
allele count: 5
allele frequency: 4.249315860146517e-5
allele num: 117666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-47G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+506G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-47G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-47G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-47G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-47G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+506G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-47G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-4882270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882270
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882270
    reference: chr 16
allele count: 120
allele frequency: 1.021380906986245e-3
allele num: 117488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-48C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-48C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-48C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-48C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-48C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+505C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-48C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+505C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10906
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

16-4882271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882271
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882271
    reference: chr 16
allele count: 2
allele frequency: 1.711596063329054e-5
allele num: 116850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-49G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-49G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-49G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-49G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+504G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-49G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-49G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+504G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10004
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

16-4882272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882272
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882272
    reference: chr 16
allele count: 1
allele frequency: 8.558273282782466e-6
allele num: 116846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-50G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-50G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-50G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-50G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-50G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+503G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+503G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-50G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16310
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-4882274-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882274
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882273
    reference: chr 16
allele count: 2
allele frequency: 1.708379601947553e-5
allele num: 117070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.257-53delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.221-53delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*335-53delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+500delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.295-53delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+500delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.295-53delG
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.295-53delG
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: TC
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-4882732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882732
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882732
    reference: chr 16
allele count: 3
allele frequency: 2.551758161373186e-5
allele num: 117566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.354G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+43G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+43G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-4882734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882734
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882734
    reference: chr 16
allele count: 1
allele frequency: 8.50210001870462e-6
allele num: 117618
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.352G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+41G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+41G>C
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

16-4882735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882735
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882735
    reference: chr 16
allele count: 1
allele frequency: 8.501666326600013e-6
allele num: 117624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+40G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.351G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

16-4882745-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882745
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882745
    reference: chr 16
allele count: 2
allele frequency: 1.69434090138936e-5
allele num: 118040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+30A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.341A>G
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-4882748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882748
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882748
    reference: chr 16
allele count: 1
allele frequency: 8.467543904215143e-6
allele num: 118098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.338C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+27C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+27C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

16-4882752-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882752
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882752
    reference: chr 16
allele count: 2
allele frequency: 1.691360530410662e-5
allele num: 118248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.334T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+23T>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+23T>A
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

16-4882762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882762
    reference: chr 16
allele count: 4
allele frequency: 3.370521419663622e-5
allele num: 118676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.324A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+13A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+13A>G
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

16-4882763-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882763
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882763
    reference: chr 16
allele count: 2
allele frequency: 1.684437482102852e-5
allele num: 118734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.256+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*334+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.294+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.294+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.294+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.220+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.323A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.294+12A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.294+12A>G
  variant of: http://identifiers.org/hgnc/24434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-4882778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882778
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882778
    reference: chr 16
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.291C>T
  hgvsp: ENST00000588297.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.217C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.291C>T
  hgvsp: ENST00000591451.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.291C>T
  hgvsp: ENST00000381983.3:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.291C>T
  hgvsp: ENST00000436648.5:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.291C>T
  hgvsp: ENST00000321919.9:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.253C>T
  hgvsp: ENST00000589389.1:c.253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.308C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*331C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp97Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

16-4882781-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882781
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882781
    reference: chr 16
allele count: 7
allele frequency: 5.82682671017364e-5
allele num: 120134
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.288A>G
  hgvsp: ENST00000321919.9:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.305A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.288A>G
  hgvsp: ENST00000436648.5:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.214A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*328A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.250A>G
  hgvsp: ENST00000589389.1:c.250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.288A>G
  hgvsp: ENST00000381983.3:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.288A>G
  hgvsp: ENST00000588297.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.288A>G
  hgvsp: ENST00000591451.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys96Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

16-4882790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882790
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882790
    reference: chr 16
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.279C>T
  hgvsp: ENST00000381983.3:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.279C>T
  hgvsp: ENST00000436648.5:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.296C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.279C>T
  hgvsp: ENST00000588297.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.279C>T
  hgvsp: ENST00000321919.9:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.205C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.279C>T
  hgvsp: ENST00000591451.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*319C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.241C>T
  hgvsp: ENST00000589389.1:c.241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala93Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-4882796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882796
    reference: chr 16
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.235G>A
  hgvsp: ENST00000589389.1:c.235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.273G>A
  hgvsp: ENST00000588297.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.199G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.273G>A
  hgvsp: ENST00000381983.3:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.273G>A
  hgvsp: ENST00000436648.5:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*313G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.273G>A
  hgvsp: ENST00000591451.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.273G>A
  hgvsp: ENST00000321919.9:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.290G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg91Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

16-4882798-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882798
    reference: chr 16
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.271A>C
  hgvsp: ENST00000321919.9:c.271A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.271A>C
  hgvsp: ENST00000588297.1:c.271A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.271A>C
  hgvsp: ENST00000381983.3:c.271A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.233A>C
  hgvsp: ENST00000589389.1:c.233A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.271A>C
  hgvsp: ENST00000591451.1:c.271A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.271A>C
  hgvsp: ENST00000436648.5:c.271A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*311A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.197A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.288A>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg91Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

16-4882808-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882808
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882808
    reference: chr 16
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.187A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.261A>C
  hgvsp: ENSP00000322716.6:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.261A>C
  hgvsp: ENSP00000467751.1:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*301A>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.261A>C
  hgvsp: ENSP00000468328.1:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.261A>C
  hgvsp: ENSP00000371413.3:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.223A>C
  hgvsp: ENSP00000466570.1:p.Glu75Asp
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.261A>C
  hgvsp: ENSP00000390276.4:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.278A>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu87Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

16-4882811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882811
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882811
    reference: chr 16
allele count: 20
allele frequency: 1.650791554550407e-4
allele num: 121154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.275C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.258C>T
  hgvsp: ENST00000591451.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.220C>T
  hgvsp: ENST00000589389.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.258C>T
  hgvsp: ENST00000381983.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.258C>T
  hgvsp: ENST00000321919.9:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*298C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.258C>T
  hgvsp: ENST00000588297.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.258C>T
  hgvsp: ENST00000436648.5:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.184C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7164
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val86Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-4882814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882814
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882814
    reference: chr 16
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.255T>C
  hgvsp: ENST00000588297.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.255T>C
  hgvsp: ENST00000436648.5:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*295T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.181T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.255T>C
  hgvsp: ENST00000321919.9:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.272T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.255T>C
  hgvsp: ENST00000381983.3:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.255T>C
  hgvsp: ENST00000591451.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.217T>C
  hgvsp: ENST00000589389.1:c.217T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala85Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

16-4882823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882823
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882823
    reference: chr 16
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.246G>A
  hgvsp: ENST00000381983.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.246G>A
  hgvsp: ENST00000321919.9:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.246G>A
  hgvsp: ENST00000436648.5:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.208G>A
  hgvsp: ENST00000589389.1:c.208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.172G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.246G>A
  hgvsp: ENST00000588297.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.263G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*286G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.246G>A
  hgvsp: ENST00000591451.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala82Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-4882826-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882826
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882826
    reference: chr 16
allele count: 2
allele frequency: 1.649321304283287e-5
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*283A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.260A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.243A>G
  hgvsp: ENST00000591451.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.243A>G
  hgvsp: ENST00000436648.5:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.243A>G
  hgvsp: ENST00000381983.3:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.205A>G
  hgvsp: ENST00000589389.1:c.205A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.243A>G
  hgvsp: ENST00000321919.9:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.169A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.243A>G
  hgvsp: ENST00000588297.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln81Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-4882835-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882835
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882835
    reference: chr 16
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.234A>G
  hgvsp: ENST00000588297.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.234A>G
  hgvsp: ENST00000436648.5:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.160A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.234A>G
  hgvsp: ENST00000591451.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.251A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.196A>G
  hgvsp: ENST00000589389.1:c.196A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*274A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.234A>G
  hgvsp: ENST00000321919.9:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.234A>G
  hgvsp: ENST00000381983.3:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg78Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

16-4882873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882873
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882873
    reference: chr 16
allele count: 4
allele frequency: 3.301201637396012e-5
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.196C>T
  hgvsp: ENSP00000322716.6:p.His66Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.196C>T
  hgvsp: ENSP00000371413.3:p.His66Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.158C>T
  hgvsp: ENSP00000466570.1:p.His54Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*236C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.213C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.196C>T
  hgvsp: ENSP00000467751.1:p.His66Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.196C>T
  hgvsp: ENSP00000468328.1:p.His66Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.196C>T
  hgvsp: ENSP00000390276.4:p.His66Tyr
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.550C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.122C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His66Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

16-4882878-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882878
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882878
    reference: chr 16
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.191A>G
  hgvsp: ENSP00000390276.4:p.His64Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.208A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.545A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.191A>G
  hgvsp: ENSP00000371413.3:p.His64Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.117A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*231A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.191A>G
  hgvsp: ENSP00000467751.1:p.His64Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.191A>G
  hgvsp: ENSP00000468328.1:p.His64Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.153A>G
  hgvsp: ENSP00000466570.1:p.His52Arg
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.191A>G
  hgvsp: ENSP00000322716.6:p.His64Arg
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His64Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-4882883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882883
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882883
    reference: chr 16
allele count: 7
allele frequency: 5.7878026193941e-5
allele num: 120944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.186A>G
  hgvsp: ENST00000591451.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.186A>G
  hgvsp: ENST00000381983.3:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.186A>G
  hgvsp: ENST00000436648.5:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.148A>G
  hgvsp: ENST00000589389.1:c.148A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.186A>G
  hgvsp: ENST00000321919.9:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*226A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.112A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.203A>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.186A>G
  hgvsp: ENST00000588297.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.540A>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro62Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-4882886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882886
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882886
    reference: chr 16
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.183G>A
  hgvsp: ENST00000436648.5:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.537G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.183G>A
  hgvsp: ENST00000381983.3:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.183G>A
  hgvsp: ENST00000588297.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.183G>A
  hgvsp: ENST00000591451.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.183G>A
  hgvsp: ENST00000321919.9:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.145G>A
  hgvsp: ENST00000589389.1:c.145G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*223G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.109G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.200G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys61Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-4882889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882889
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882889
    reference: chr 16
allele count: 16
allele frequency: 1.328153534548594e-4
allele num: 120468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.180G>A
  hgvsp: ENST00000588297.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.180G>A
  hgvsp: ENST00000591451.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.197G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.142G>A
  hgvsp: ENST00000589389.1:c.142G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.180G>A
  hgvsp: ENST00000321919.9:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*220G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.180G>A
  hgvsp: ENST00000436648.5:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.534G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.106G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.180G>A
  hgvsp: ENST00000381983.3:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu60Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

16-4882897-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882897
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882897
    reference: chr 16
allele count: 1
allele frequency: 8.319190709127816e-6
allele num: 120204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.172G>C
  hgvsp: ENSP00000390276.4:p.Glu58Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.134G>C
  hgvsp: ENSP00000466570.1:p.Glu46Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*212G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.526G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.189G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.98G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.172G>C
  hgvsp: ENSP00000468328.1:p.Glu58Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.172G>C
  hgvsp: ENSP00000371413.3:p.Glu58Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.172G>C
  hgvsp: ENSP00000322716.6:p.Glu58Gln
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.172G>C
  hgvsp: ENSP00000467751.1:p.Glu58Gln
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu58Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

16-4882900-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882900
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882900
    reference: chr 16
allele count: 2
allele frequency: 1.664308895731048e-5
allele num: 120170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.169G>C
  hgvsp: ENSP00000467751.1:p.Val57Leu
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.131G>C
  hgvsp: ENSP00000466570.1:p.Val45Leu
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.169G>C
  hgvsp: ENSP00000371413.3:p.Val57Leu
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.95G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.523G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.169G>C
  hgvsp: ENSP00000322716.6:p.Val57Leu
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.186G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.169G>C
  hgvsp: ENSP00000468328.1:p.Val57Leu
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.169G>C
  hgvsp: ENSP00000390276.4:p.Val57Leu
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*209G>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val57Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-4882910-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882910
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882910
    reference: chr 16
allele count: 4
allele frequency: 3.351824230337361e-5
allele num: 119338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.159C>G
  hgvsp: ENST00000591451.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.159C>G
  hgvsp: ENST00000588297.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.513C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*199C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.159C>G
  hgvsp: ENST00000321919.9:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.121C>G
  hgvsp: ENST00000589389.1:c.121C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.159C>G
  hgvsp: ENST00000436648.5:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.159C>G
  hgvsp: ENST00000381983.3:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.85C>G
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.176C>G
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala53Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/16-4882918-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882918
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882918
    reference: chr 16
allele count: 1
allele frequency: 8.418358756776778e-6
allele num: 118788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-5G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-5G>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
hgvs: c.156-5G>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

16-4882918-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882918
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882918
    reference: chr 16
allele count: 1
allele frequency: 8.418358756776778e-6
allele num: 118788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-5G>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-5G>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
hgvs: c.156-5G>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/16-4882921-AAAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882921
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882917
    reference: chr 16
allele count: 1
allele frequency: 8.42715566641947e-6
allele num: 118664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-12_*196-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-12_82-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-12_173-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-12_156-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-12_510-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-12_156-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-12_156-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-12_118-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-12_156-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-12_156-9delGTTT
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: AAAAC
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

16-4882928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882928
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882928
    reference: chr 16
allele count: 1
allele frequency: 8.454371755634839e-6
allele num: 118282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-15T>C
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-15T>C
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-4882929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882929
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882929
    reference: chr 16
allele count: 1
allele frequency: 8.467113730271625e-6
allele num: 118104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-16G>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-16G>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41164
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

16-4882940-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882940
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882940
    reference: chr 16
allele count: 1
allele frequency: 8.503401360544217e-6
allele num: 117600
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-27A>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-27A>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-4882941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882941
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882941
    reference: chr 16
allele count: 1
allele frequency: 8.509769215058888e-6
allele num: 117512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-28C>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-28C>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-4882943-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882943
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882943
    reference: chr 16
allele count: 1
allele frequency: 8.524277141298417e-6
allele num: 117312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-30C>A
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-30C>A
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-4882947-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4882947
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4882947
    reference: chr 16
allele count: 1
allele frequency: 8.566631257924135e-6
allele num: 116732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466127
  ensembl transcript: ENST00000588732
  gene symbol: GLYR1
  hgvsc: ENST00000588732.1:c.*196-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000468328
  ensembl transcript: ENST00000591451
  gene symbol: GLYR1
  hgvsc: ENST00000591451.1:c.156-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000587875
  gene symbol: GLYR1
  hgvsc: ENST00000587875.1:n.173-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000322716
  ensembl transcript: ENST00000321919
  gene symbol: GLYR1
  hgvsc: ENST00000321919.9:c.156-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000371413
  ensembl transcript: ENST00000381983
  gene symbol: GLYR1
  hgvsc: ENST00000381983.3:c.156-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000390276
  ensembl transcript: ENST00000436648
  gene symbol: GLYR1
  hgvsc: ENST00000436648.5:c.156-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000467751
  ensembl transcript: ENST00000588297
  gene symbol: GLYR1
  hgvsc: ENST00000588297.1:c.156-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000586901
  gene symbol: GLYR1
  hgvsc: ENST00000586901.1:n.82-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl protein: ENSP00000466570
  ensembl transcript: ENST00000589389
  gene symbol: GLYR1
  hgvsc: ENST00000589389.1:c.118-34G>T
  variant of: http://identifiers.org/hgnc/24434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140632
  ensembl transcript: ENST00000591159
  gene symbol: GLYR1
  hgvsc: ENST00000591159.1:n.510-34G>T
  variant of: http://identifiers.org/hgnc/24434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16272
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4358
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198681450404555e-4
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.658e0

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 2.137627e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16266
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.136565e6

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16339
bin: 9.75e1
variant carriers: 135

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 122
allele frequency: 1.172851374735628e-2
allele num: 10402
num of homozygotes: 1

Latino
type: Population
allele count: 7
allele frequency: 6.046993780234969e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990649724286742e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 2.153006e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

QD
type: SiteQuality
SIO_000300: 1.411e1

FS
type: SiteQuality
SIO_000300: 1.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.476e0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5097
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

FS
type: SiteQuality
SIO_000300: 2.03e0

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 1.437e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.173e0

DP
type: SiteQuality
SIO_000300: 2.137064e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2731
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17365
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.136871e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.749e0

FS
type: SiteQuality
SIO_000300: 6.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 5.726e0

DP
type: SiteQuality
SIO_000300: 2.136853e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.46e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16246
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5096
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

QD
type: SiteQuality
SIO_000300: 1.502e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
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SIO_000300: 2.136731e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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DP
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InbreedingCoeff
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SIO_000300: -4.0e-4

ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16510
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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European (Finnish)
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QD
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.979e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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African
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East Asian
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South Asian
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 8.994693131052679e-5
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East Asian
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South Asian
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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European (Non-Finnish)
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Other
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Latino
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South Asian
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European (Finnish)
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MQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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DP
type: SiteQuality
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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Latino
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South Asian
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allele frequency: 4.002911208151383e-3
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European (Finnish)
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African
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East Asian
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MQRankSum
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FS
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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SIO_000300: -2.686e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

QD
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InbreedingCoeff
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VQSLOD
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FS
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DP
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.502855425308085e-5
allele num: 66540
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East Asian
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allele frequency: 0.0e0
allele num: 8642
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

MQRankSum
type: SiteQuality
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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VQSLOD
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SIO_000300: 3.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 8
allele frequency: 9.26569376882094e-4
allele num: 8634
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10292
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Latino
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MQRankSum
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 6.71e-1

DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66356
num of homozygotes: 0

South Asian
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East Asian
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allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.509069507741527e-5
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East Asian
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Latino
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African
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South Asian
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European (Finnish)
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allele count: 0
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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FS
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11542
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European (Finnish)
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East Asian
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African
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.553e1

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.100566e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.253918495297806e-4
allele num: 15950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

DP
type: SiteQuality
SIO_000300: 2.047843e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeQuality
all individuals: 4825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 9113
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65110
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.036e0

QD
type: SiteQuality
SIO_000300: 1.102e1

FS
type: SiteQuality
SIO_000300: 6.708e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

DP
type: SiteQuality
SIO_000300: 2.046666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5009
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535862386730149e-5
allele num: 65110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.708e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

MQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.046666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 624
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1118
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variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.309e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.916e0

DP
type: SiteQuality
SIO_000300: 2.042448e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

QD
type: SiteQuality
SIO_000300: 1.828e1

GenotypeQuality
all individuals: 332
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 580
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 5607
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3235
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539882968894364e-5
allele num: 64940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.407791874919902e-5
allele num: 15606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.172e0

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
SIO_000300: 1.1972e1

DP
type: SiteQuality
SIO_000300: 2.042738e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.478e0

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.258e0

GenotypeQuality
all individuals: 1063
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2732
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variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.094697751186301e-4
allele num: 9694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.520605112154408e-5
allele num: 15336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537515375153751e-5
allele num: 65040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

DP
type: SiteQuality
SIO_000300: 2.04816e6

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

GenotypeQuality
all individuals: 1519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 119

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 155
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7841
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 94
allele frequency: 1.446331856228459e-3
allele num: 64992
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.130631414158984e-3
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.287925696594427e-4
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.545454545454545e-4
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15230
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.295e1

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.922e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 2.049679e6

GenotypeQuality
all individuals: 2181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5197
bin: 6.75e1
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GenotypeQuality
all individuals: 16311
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.324500232450023e-4
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15008
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.554e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 2.049493e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 1.596e0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544687818591863e-5
allele num: 64738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e-1

DP
type: SiteQuality
SIO_000300: 2.04959e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 6.158e0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.383e0

GenotypeQuality
all individuals: 520
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16316
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083564600678385e-5
allele num: 64860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 2.050201e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 1.207e0

QD
type: SiteQuality
SIO_000300: 1.511e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

GenotypeQuality
all individuals: 1426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41260
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.174543345897362e-4
allele num: 13796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.159412e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

GenotypeQuality
all individuals: 943
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13842
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.196e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

QD
type: SiteQuality
SIO_000300: 1.562e1

FS
type: SiteQuality
SIO_000300: 1.462e0

DP
type: SiteQuality
SIO_000300: 3.160223e6

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.689e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

GenotypeQuality
all individuals: 2831
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41256
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.22334585379948e-5
allele num: 13844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 1.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 3.160635e6

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 872
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41256
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037390274276342e-5
allele num: 65846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 1.444e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 3.166302e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

GenotypeQuality
all individuals: 1562
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-5
allele num: 65860
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.167793e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.333e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 3.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.545e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 41255
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14262
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 3.170799e6

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 1853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41254
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514463122822959e-5
allele num: 66030
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

DP
type: SiteQuality
SIO_000300: 3.178253e6

FS
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.524e1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41252
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.028375882014476e-5
allele num: 66042
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQ
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66330
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East Asian
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African
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Other
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South Asian
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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QD
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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allele frequency: 1.05421686746988e-4
allele num: 66400
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Latino
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East Asian
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South Asian
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MQ
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BaseQRankSum
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DP
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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Other
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InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.132e0

InbreedingCoeff
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MQRankSum
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SIO_000300: 7.11e-1

BaseQRankSum
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SIO_000300: -1.032e0

ClippingRankSum
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SIO_000300: -1.513e0

ReadPosRankSum
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SIO_000300: 9.52e-1

VQSLOD
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MQ
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SIO_000300: 5.916e1

QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66666
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South Asian
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allele num: 16414
num of homozygotes: 0

East Asian
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allele num: 8654
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQRankSum
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.631e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 5.261e0

MQRankSum
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SIO_000300: -1.014e0

DP
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SIO_000300: 3.216966e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 2.203e0

VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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Other
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Latino
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allele num: 11576
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 1.051240463747222e-4
allele num: 66588
num of homozygotes: 0

African
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Other
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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DP
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.355299219950005e-4
allele num: 66406
num of homozygotes: 0

East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
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European (Finnish)
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allele count: 4
allele frequency: 6.13685179502915e-4
allele num: 6518
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92975685063682e-4
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.17696e2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -2.186e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.155e0

DP
type: SiteQuality
SIO_000300: 3.203919e6

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.777e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 6.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.185352e6

FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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SIO_000300: 5.26e-1

ClippingRankSum
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SIO_000300: -1.891e0

ReadPosRankSum
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SIO_000300: 2.24e0

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.21e0

QD
type: SiteQuality
SIO_000300: 1.637e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 5.259e0

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

DP
type: SiteQuality
SIO_000300: 3.18493e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
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SIO_000300: 1.292e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41170
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 4.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.676e0

DP
type: SiteQuality
SIO_000300: 3.168919e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.292e1

DP
type: SiteQuality
SIO_000300: 3.159607e6

VQSLOD
type: SiteQuality
SIO_000300: -1.275e-1

FS
type: SiteQuality
SIO_000300: 8.715e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.236e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.81384573453257e-5
allele num: 14676
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.236e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.159607e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66000
num of homozygotes: 0

South Asian
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ClippingRankSum
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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FS
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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QD
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DP
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2830
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518141794443601e-5
allele num: 65870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -3.082e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.047e0

DP
type: SiteQuality
SIO_000300: 3.146438e6

QD
type: SiteQuality
SIO_000300: 8.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

GenotypeQuality
all individuals: 2643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65750
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

FS
type: SiteQuality
SIO_000300: 1.901e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 3.135242e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41157
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 5.725e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.711e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 3.134506e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 5.294e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 3.131602e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.95e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.693e0