17-4461807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461807
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461807
    reference: chr 17
allele count: 11
allele frequency: 1.597629698483704e-4
allele num: 68852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.889C>T
  hgvsp: ENSP00000301395.3:p.Arg297Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.541C>T
  hgvsp: ENSP00000461230.1:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.1003C>T
  hgvsp: ENSP00000370962.3:p.Arg335Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-45C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.985C>T
  hgvsp: ENSP00000458307.1:p.Arg329Cys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20705
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg329Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

17-4461812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461812
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461812
    reference: chr 17
allele count: 2
allele frequency: 2.97441998810232e-5
allele num: 67240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.884C>T
  hgvsp: ENSP00000301395.3:p.Ala295Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.536C>T
  hgvsp: ENSP00000461230.1:p.Ala179Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.998C>T
  hgvsp: ENSP00000370962.3:p.Ala333Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.980C>T
  hgvsp: ENSP00000458307.1:p.Ala327Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-50C>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
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genotype quality: GenotypeQuality
  all individuals: 5007
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 249
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genotype quality: GenotypeQuality
  all individuals: 4773
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala327Val
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-4461816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461816
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461816
    reference: chr 17
allele count: 1
allele frequency: 1.523600572873815e-5
allele num: 65634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.880G>A
  hgvsp: ENSP00000301395.3:p.Ala294Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.976G>A
  hgvsp: ENSP00000458307.1:p.Ala326Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.532G>A
  hgvsp: ENSP00000461230.1:p.Ala178Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-54G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.994G>A
  hgvsp: ENSP00000370962.3:p.Ala332Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1678
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala326Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-4461820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461820
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461820
    reference: chr 17
allele count: 4
allele frequency: 6.227231684154809e-5
allele num: 64234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.990G>A
  hgvsp: ENST00000381550.3:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-58G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.876G>A
  hgvsp: ENST00000301395.3:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.528G>A
  hgvsp: ENST00000573591.1:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.972G>A
  hgvsp: ENST00000574154.1:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu324Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-4461821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461821
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461821
    reference: chr 17
allele count: 5
allele frequency: 7.737782042155437e-5
allele num: 64618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.875T>C
  hgvsp: ENSP00000301395.3:p.Leu292Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.989T>C
  hgvsp: ENSP00000370962.3:p.Leu330Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-59T>C
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.971T>C
  hgvsp: ENSP00000458307.1:p.Leu324Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.527T>C
  hgvsp: ENSP00000461230.1:p.Leu176Ser
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19500
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu324Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-4461824-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461824
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461824
    reference: chr 17
allele count: 13
allele frequency: 2.048663640948058e-4
allele num: 63456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.872T>A
  hgvsp: ENSP00000301395.3:p.Leu291Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.524T>A
  hgvsp: ENSP00000461230.1:p.Leu175Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.968T>A
  hgvsp: ENSP00000458307.1:p.Leu323Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.986T>A
  hgvsp: ENSP00000370962.3:p.Leu329Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-62T>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19281
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22925
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu323Gln
num of homozygotes: 1
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

17-4461834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461834
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461834
    reference: chr 17
allele count: 1
allele frequency: 1.629460648525338e-5
allele num: 61370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.976C>T
  hgvsp: ENST00000381550.3:c.976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.514C>T
  hgvsp: ENST00000573591.1:c.514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.862C>T
  hgvsp: ENST00000301395.3:c.862C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-72C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.958C>T
  hgvsp: ENST00000574154.1:c.958C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5806
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5182
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu320Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-4461839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461839
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461839
    reference: chr 17
allele count: 3
allele frequency: 4.984051036682616e-5
allele num: 60192
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.953C>G
  hgvsp: ENSP00000458307.1:p.Pro318Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.971C>G
  hgvsp: ENSP00000370962.3:p.Pro324Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-77C>G
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.857C>G
  hgvsp: ENSP00000301395.3:p.Pro286Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.509C>G
  hgvsp: ENSP00000461230.1:p.Pro170Arg
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23909
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro318Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

17-4461840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461840
    reference: chr 17
allele count: 2
allele frequency: 3.364284753061499e-5
allele num: 59448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-78C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.856C>T
  hgvsp: ENSP00000301395.3:p.Pro286Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.970C>T
  hgvsp: ENSP00000370962.3:p.Pro324Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.508C>T
  hgvsp: ENSP00000461230.1:p.Pro170Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.952C>T
  hgvsp: ENSP00000458307.1:p.Pro318Ser
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro318Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-4461856-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461856
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461856
    reference: chr 17
allele count: 2
allele frequency: 3.480682213713888e-5
allele num: 57460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-94C>G
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.840C>G
  hgvsp: ENST00000301395.3:c.840C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.954C>G
  hgvsp: ENST00000381550.3:c.954C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.492C>G
  hgvsp: ENST00000573591.1:c.492C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.936C>G
  hgvsp: ENST00000574154.1:c.936C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17152
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6594
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro312Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

17-4461861-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461861
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461861
    reference: chr 17
allele count: 9
allele frequency: 1.564836387662134e-4
allele num: 57514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.835A>C
  hgvsp: ENSP00000301395.3:p.Thr279Pro
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.949A>C
  hgvsp: ENSP00000370962.3:p.Thr317Pro
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.931A>C
  hgvsp: ENSP00000458307.1:p.Thr311Pro
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-99A>C
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.487A>C
  hgvsp: ENSP00000461230.1:p.Thr163Pro
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17009
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr311Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-4461872-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461872
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461872
    reference: chr 17
allele count: 1
allele frequency: 1.731361889262094e-5
allele num: 57758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.938T>G
  hgvsp: ENSP00000370962.3:p.Ile313Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.824T>G
  hgvsp: ENSP00000301395.3:p.Ile275Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-110T>G
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.476T>G
  hgvsp: ENSP00000461230.1:p.Ile159Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.920T>G
  hgvsp: ENSP00000458307.1:p.Ile307Ser
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile307Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-4461877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461877
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461877
    reference: chr 17
allele count: 1
allele frequency: 1.73460537727667e-5
allele num: 57650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.933G>A
  hgvsp: ENST00000381550.3:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.471G>A
  hgvsp: ENST00000573591.1:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.819G>A
  hgvsp: ENST00000301395.3:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.915G>A
  hgvsp: ENST00000574154.1:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-115G>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15866
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln305Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-4461891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461891
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461891
    reference: chr 17
allele count: 2
allele frequency: 3.39236040436936e-5
allele num: 58956
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.901C>T
  hgvsp: ENST00000574154.1:c.901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-129C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.457C>T
  hgvsp: ENST00000573591.1:c.457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.919C>T
  hgvsp: ENST00000381550.3:c.919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.805C>T
  hgvsp: ENST00000301395.3:c.805C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14751
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu301Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

17-4461892-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461892
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461892
    reference: chr 17
allele count: 7
allele frequency: 1.184553423359394e-4
allele num: 59094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.804G>C
  hgvsp: ENSP00000301395.3:p.Gln268His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.900G>C
  hgvsp: ENSP00000458307.1:p.Gln300His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.918G>C
  hgvsp: ENSP00000370962.3:p.Gln306His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.456G>C
  hgvsp: ENSP00000461230.1:p.Gln152His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-130G>C
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14701
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24646
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27388
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 5782
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln300His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-4461894-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461894
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461894
    reference: chr 17
allele count: 2
allele frequency: 3.361683531112381e-5
allele num: 59494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.454C>A
  hgvsp: ENSP00000461230.1:p.Gln152Lys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.802C>A
  hgvsp: ENSP00000301395.3:p.Gln268Lys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.916C>A
  hgvsp: ENSP00000370962.3:p.Gln306Lys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-132C>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.898C>A
  hgvsp: ENSP00000458307.1:p.Gln300Lys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8821
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln300Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-4461895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461895
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461895
    reference: chr 17
allele count: 1
allele frequency: 1.673976363453748e-5
allele num: 59738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.915G>A
  hgvsp: ENST00000381550.3:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-133G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.801G>A
  hgvsp: ENST00000301395.3:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.897G>A
  hgvsp: ENST00000574154.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.453G>A
  hgvsp: ENST00000573591.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu299Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

17-4461903-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461903
    reference: chr 17
allele count: 5
allele frequency: 8.171536902660653e-5
allele num: 61188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.793C>A
  hgvsp: ENSP00000301395.3:p.Pro265Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.445C>A
  hgvsp: ENSP00000461230.1:p.Pro149Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.889C>A
  hgvsp: ENSP00000458307.1:p.Pro297Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-141C>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.907C>A
  hgvsp: ENSP00000370962.3:p.Pro303Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24158
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro297Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

17-4461913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461913
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461913
    reference: chr 17
allele count: 1
allele frequency: 1.590431961320695e-5
allele num: 62876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.435C>T
  hgvsp: ENST00000573591.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.897C>T
  hgvsp: ENST00000381550.3:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.783C>T
  hgvsp: ENST00000301395.3:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-151C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.879C>T
  hgvsp: ENST00000574154.1:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro293Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-4461915-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461915
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461915
    reference: chr 17
allele count: 2
allele frequency: 3.159158400202186e-5
allele num: 63308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-153C>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.877C>A
  hgvsp: ENSP00000458307.1:p.Pro293Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.895C>A
  hgvsp: ENSP00000370962.3:p.Pro299Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.433C>A
  hgvsp: ENSP00000461230.1:p.Pro145Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.781C>A
  hgvsp: ENSP00000301395.3:p.Pro261Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro293Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

17-4461924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461924
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461924
    reference: chr 17
allele count: 80
allele frequency: 1.234225060939862e-3
allele num: 64818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.772G>A
  hgvsp: ENSP00000301395.3:p.Val258Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.868G>A
  hgvsp: ENSP00000458307.1:p.Val290Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.424G>A
  hgvsp: ENSP00000461230.1:p.Val142Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.886G>A
  hgvsp: ENSP00000370962.3:p.Val296Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-162G>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22922
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val290Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

17-4461924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461924
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461924
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 64818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.886G>C
  hgvsp: ENSP00000370962.3:p.Val296Leu
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-162G>C
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.868G>C
  hgvsp: ENSP00000458307.1:p.Val290Leu
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.424G>C
  hgvsp: ENSP00000461230.1:p.Val142Leu
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.772G>C
  hgvsp: ENSP00000301395.3:p.Val258Leu
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22922
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val290Leu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-4461927-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461927
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461927
    reference: chr 17
allele count: 3
allele frequency: 4.595025119470653e-5
allele num: 65288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.421G>T
  hgvsp: ENSP00000461230.1:p.Ala141Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.769G>T
  hgvsp: ENSP00000301395.3:p.Ala257Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.883G>T
  hgvsp: ENSP00000370962.3:p.Ala295Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-165G>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.865G>T
  hgvsp: ENSP00000458307.1:p.Ala289Ser
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala289Ser
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

17-4461928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461928
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461928
    reference: chr 17
allele count: 5
allele frequency: 7.61591421434229e-5
allele num: 65652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.882G>A
  hgvsp: ENST00000381550.3:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-166G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.768G>A
  hgvsp: ENST00000301395.3:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.864G>A
  hgvsp: ENST00000574154.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.420G>A
  hgvsp: ENST00000573591.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser288Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-4461929-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461929
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461929
    reference: chr 17
allele count: 1
allele frequency: 1.512813530604218e-5
allele num: 66102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-167C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.419C>T
  hgvsp: ENSP00000461230.1:p.Ser140Leu
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.863C>T
  hgvsp: ENSP00000458307.1:p.Ser288Leu
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.881C>T
  hgvsp: ENSP00000370962.3:p.Ser294Leu
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.767C>T
  hgvsp: ENSP00000301395.3:p.Ser256Leu
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser288Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-4461952-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461952
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461952
    reference: chr 17
allele count: 8
allele frequency: 1.256992018100685e-4
allele num: 63644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.744A>G
  hgvsp: ENST00000301395.3:c.744A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-190A>G
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.396A>G
  hgvsp: ENST00000573591.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.858A>G
  hgvsp: ENST00000381550.3:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.840A>G
  hgvsp: ENST00000574154.1:c.840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17666
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17369
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Gly280Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

17-4461955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461955
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461955
    reference: chr 17
allele count: 1
allele frequency: 1.210214207914801e-5
allele num: 82630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.855G>A
  hgvsp: ENST00000381550.3:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.393G>A
  hgvsp: ENST00000573591.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.741G>A
  hgvsp: ENST00000301395.3:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-193G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.837G>A
  hgvsp: ENST00000574154.1:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17833
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25061
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala279Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

17-4461956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461956
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461956
    reference: chr 17
allele count: 4
allele frequency: 4.813825306279635e-5
allele num: 83094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.392C>T
  hgvsp: ENSP00000461230.1:p.Ala131Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.740C>T
  hgvsp: ENSP00000301395.3:p.Ala247Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.836C>T
  hgvsp: ENSP00000458307.1:p.Ala279Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-194C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.854C>T
  hgvsp: ENSP00000370962.3:p.Ala285Val
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ala279Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-4461957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461957
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461957
    reference: chr 17
allele count: 3
allele frequency: 3.601872973946452e-5
allele num: 83290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-195G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.853G>A
  hgvsp: ENSP00000370962.3:p.Ala285Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.739G>A
  hgvsp: ENSP00000301395.3:p.Ala247Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.835G>A
  hgvsp: ENSP00000458307.1:p.Ala279Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.391G>A
  hgvsp: ENSP00000461230.1:p.Ala131Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala279Thr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

17-4461959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461959
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461959
    reference: chr 17
allele count: 16
allele frequency: 1.921598770176787e-4
allele num: 83264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.833T>C
  hgvsp: ENSP00000458307.1:p.Leu278Pro
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.851T>C
  hgvsp: ENSP00000370962.3:p.Leu284Pro
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-197T>C
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.737T>C
  hgvsp: ENSP00000301395.3:p.Leu246Pro
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.389T>C
  hgvsp: ENSP00000461230.1:p.Leu130Pro
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu278Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-4461967-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461967
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461967
    reference: chr 17
allele count: 1
allele frequency: 1.191327138432214e-5
allele num: 83940
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.825G>T
  hgvsp: ENST00000574154.1:c.825G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.381G>T
  hgvsp: ENST00000573591.1:c.381G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.843G>T
  hgvsp: ENST00000381550.3:c.843G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-205G>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.729G>T
  hgvsp: ENST00000301395.3:c.729G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu275Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

17-4461969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461969
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461969
    reference: chr 17
allele count: 1
allele frequency: 1.189824619851034e-5
allele num: 84046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.841C>T
  hgvsp: ENST00000381550.3:c.841C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.379C>T
  hgvsp: ENST00000573591.1:c.379C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.823C>T
  hgvsp: ENST00000574154.1:c.823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-207C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.727C>T
  hgvsp: ENST00000301395.3:c.727C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20916
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu275Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

17-4461974-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461974
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461974
    reference: chr 17
allele count: 2
allele frequency: 2.397104298008006e-5
allele num: 83434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.836C>T
  hgvsp: ENSP00000370962.3:p.Ala279Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.374C>T
  hgvsp: ENSP00000461230.1:p.Ala125Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.722C>T
  hgvsp: ENSP00000301395.3:p.Ala241Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.818C>T
  hgvsp: ENSP00000458307.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-212C>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala273Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-4461978-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461978
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461978
    reference: chr 17
allele count: 1
allele frequency: 1.195400100413608e-5
allele num: 83654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.832G>T
  hgvsp: ENSP00000370962.3:p.Asp278Tyr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.370G>T
  hgvsp: ENSP00000461230.1:p.Asp124Tyr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.718G>T
  hgvsp: ENSP00000301395.3:p.Asp240Tyr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.814G>T
  hgvsp: ENSP00000458307.1:p.Asp272Tyr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-216G>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp272Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-4461982-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461982
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461982
    reference: chr 17
allele count: 1
allele frequency: 1.199069522050888e-5
allele num: 83398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.366T>C
  hgvsp: ENST00000573591.1:c.366T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.714T>C
  hgvsp: ENST00000301395.3:c.714T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.810T>C
  hgvsp: ENST00000574154.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.828T>C
  hgvsp: ENST00000381550.3:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-220T>C
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22312
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala270Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-4461994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4461994
    reference: chr 17
allele count: 1
allele frequency: 1.278674270516329e-5
allele num: 78206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.354C>T
  hgvsp: ENST00000573591.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.702C>T
  hgvsp: ENST00000301395.3:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.816C>T
  hgvsp: ENST00000381550.3:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-232C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.798C>T
  hgvsp: ENST00000574154.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr266Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-4461998-G-GGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4461998
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462000
    reference: chr 17
allele count: 2
allele frequency: 2.640682352319839e-5
allele num: 75738
alternate allele: GGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-238_440-237dupTC
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.792_793dupTC
  hgvsp: ENSP00000458307.1:p.Pro265LeufsTer12
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.348_349dupTC
  hgvsp: ENSP00000461230.1:p.Pro117LeufsTer12
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.696_697dupTC
  hgvsp: ENSP00000301395.3:p.Pro233LeufsTer12
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.810_811dupTC
  hgvsp: ENSP00000370962.3:p.Pro271LeufsTer12
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27622
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro265LeufsTer12
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-4462002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462002
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462002
    reference: chr 17
allele count: 1
allele frequency: 1.381024720342494e-5
allele num: 72410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.346G>A
  hgvsp: ENSP00000461230.1:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.790G>A
  hgvsp: ENSP00000458307.1:p.Ala264Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.694G>A
  hgvsp: ENSP00000301395.3:p.Ala232Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.808G>A
  hgvsp: ENSP00000370962.3:p.Ala270Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-240G>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13217
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala264Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

17-4462011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462011
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462011
    reference: chr 17
allele count: 1
allele frequency: 1.486369987217218e-5
allele num: 67278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.781G>A
  hgvsp: ENSP00000458307.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.685G>A
  hgvsp: ENSP00000301395.3:p.Ala229Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-249G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.799G>A
  hgvsp: ENSP00000370962.3:p.Ala267Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.337G>A
  hgvsp: ENSP00000461230.1:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala261Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-4462012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462012
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462012
    reference: chr 17
allele count: 1
allele frequency: 1.484516492978237e-5
allele num: 67362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.684C>T
  hgvsp: ENST00000301395.3:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-250C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.780C>T
  hgvsp: ENST00000574154.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.336C>T
  hgvsp: ENST00000573591.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.798C>T
  hgvsp: ENST00000381550.3:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser260Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-4462012-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462012
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462012
    reference: chr 17
allele count: 1
allele frequency: 1.484516492978237e-5
allele num: 67362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.780C>A
  hgvsp: ENSP00000458307.1:p.Ser260Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.684C>A
  hgvsp: ENSP00000301395.3:p.Ser228Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-250C>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.336C>A
  hgvsp: ENSP00000461230.1:p.Ser112Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.798C>A
  hgvsp: ENSP00000370962.3:p.Ser266Arg
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser260Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-4462014-TGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462014
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462012
    reference: chr 17
allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.776_777delGC
  hgvsp: ENSP00000458307.1:p.Arg259GlnfsTer77
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.332_333delGC
  hgvsp: ENSP00000461230.1:p.Arg111GlnfsTer77
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.794_795delGC
  hgvsp: ENSP00000370962.3:p.Arg265GlnfsTer77
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-254_440-253delGC
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.680_681delGC
  hgvsp: ENSP00000301395.3:p.Arg227GlnfsTer77
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg259GlnfsTer77
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: TGC
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

17-4462016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462016
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462016
    reference: chr 17
allele count: 19
allele frequency: 2.951135410518468e-4
allele num: 64382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.776G>A
  hgvsp: ENSP00000458307.1:p.Arg259His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.332G>A
  hgvsp: ENSP00000461230.1:p.Arg111His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.680G>A
  hgvsp: ENSP00000301395.3:p.Arg227His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-254G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.794G>A
  hgvsp: ENSP00000370962.3:p.Arg265His
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.75e1
  variant carriers: 18
hgvs: p.Arg259His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-4462017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462017
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462017
    reference: chr 17
allele count: 3
allele frequency: 4.654915590863953e-5
allele num: 64448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-255C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.331C>T
  hgvsp: ENSP00000461230.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.793C>T
  hgvsp: ENSP00000370962.3:p.Arg265Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.775C>T
  hgvsp: ENSP00000458307.1:p.Arg259Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.679C>T
  hgvsp: ENSP00000301395.3:p.Arg227Cys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23114
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5032
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg259Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-4462019-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462019
    reference: chr 17
allele count: 3
allele frequency: 4.716832803999874e-5
allele num: 63602
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.773T>G
  hgvsp: ENSP00000458307.1:p.Leu258Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.677T>G
  hgvsp: ENSP00000301395.3:p.Leu226Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.329T>G
  hgvsp: ENSP00000461230.1:p.Leu110Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.791T>G
  hgvsp: ENSP00000370962.3:p.Leu264Arg
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-257T>G
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1255
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genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 5355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu258Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-4462019-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462019
    reference: chr 17
allele count: 1
allele frequency: 1.572277601333291e-5
allele num: 63602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-257T>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.791T>A
  hgvsp: ENSP00000370962.3:p.Leu264His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.677T>A
  hgvsp: ENSP00000301395.3:p.Leu226His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.329T>A
  hgvsp: ENSP00000461230.1:p.Leu110His
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.773T>A
  hgvsp: ENSP00000458307.1:p.Leu258His
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 431
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu258His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-4462027-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462027
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462027
    reference: chr 17
allele count: 1
allele frequency: 1.692391010018955e-5
allele num: 59088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.321A>G
  hgvsp: ENST00000573591.1:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.669A>G
  hgvsp: ENST00000301395.3:c.669A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.765A>G
  hgvsp: ENST00000574154.1:c.765A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.783A>G
  hgvsp: ENST00000381550.3:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-265A>G
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24061
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala255Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

17-4462028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462028
    reference: chr 17
allele count: 1
allele frequency: 1.71556013038257e-5
allele num: 58290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-266C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.320C>T
  hgvsp: ENSP00000461230.1:p.Ala107Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.764C>T
  hgvsp: ENSP00000458307.1:p.Ala255Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.668C>T
  hgvsp: ENSP00000301395.3:p.Ala223Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.782C>T
  hgvsp: ENSP00000370962.3:p.Ala261Val
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala255Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

17-4462038-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462038
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462038
    reference: chr 17
allele count: 1
allele frequency: 1.915488641152358e-5
allele num: 52206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.772C>A
  hgvsp: ENSP00000370962.3:p.Pro258Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.310C>A
  hgvsp: ENSP00000461230.1:p.Pro104Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.658C>A
  hgvsp: ENSP00000301395.3:p.Pro220Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-276C>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.754C>A
  hgvsp: ENSP00000458307.1:p.Pro252Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro252Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-4462046-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462046
    reference: chr 17
allele count: 1
allele frequency: 2.202837254383646e-5
allele num: 45396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.302C>A
  hgvsp: ENSP00000461230.1:p.Ala101Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-284C>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.764C>A
  hgvsp: ENSP00000370962.3:p.Ala255Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.650C>A
  hgvsp: ENSP00000301395.3:p.Ala217Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.746C>A
  hgvsp: ENSP00000458307.1:p.Ala249Asp
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11919
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala249Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

17-4462049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462049
    reference: chr 17
allele count: 2
allele frequency: 5.020584396023697e-5
allele num: 39836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.761G>A
  hgvsp: ENSP00000370962.3:p.Arg254Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.647G>A
  hgvsp: ENSP00000301395.3:p.Arg216Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.299G>A
  hgvsp: ENSP00000461230.1:p.Arg100Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-287G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.743G>A
  hgvsp: ENSP00000458307.1:p.Arg248Gln
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24374
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg248Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

17-4462050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462050
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462050
    reference: chr 17
allele count: 4
allele frequency: 1.012914661939732e-4
allele num: 39490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.760C>T
  hgvsp: ENSP00000370962.3:p.Arg254Ter
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.646C>T
  hgvsp: ENSP00000301395.3:p.Arg216Ter
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-288C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.298C>T
  hgvsp: ENSP00000461230.1:p.Arg100Ter
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.742C>T
  hgvsp: ENSP00000458307.1:p.Arg248Ter
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16076
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24963
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16457
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg248Ter
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-4462058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462058
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462058
    reference: chr 17
allele count: 1
allele frequency: 2.906300860265055e-5
allele num: 34408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.290C>T
  hgvsp: ENSP00000461230.1:p.Ala97Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.638C>T
  hgvsp: ENSP00000301395.3:p.Ala213Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.734C>T
  hgvsp: ENSP00000458307.1:p.Ala245Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.752C>T
  hgvsp: ENSP00000370962.3:p.Ala251Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-296C>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22751
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala245Val
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-4462059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462059
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462059
    reference: chr 17
allele count: 2
allele frequency: 5.858230814294083e-5
allele num: 34140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-297G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.637G>A
  hgvsp: ENSP00000301395.3:p.Ala213Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.289G>A
  hgvsp: ENSP00000461230.1:p.Ala97Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.751G>A
  hgvsp: ENSP00000370962.3:p.Ala251Thr
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.733G>A
  hgvsp: ENSP00000458307.1:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19925
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala245Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-4462060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462060
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462060
    reference: chr 17
allele count: 1
allele frequency: 3.040068097525384e-5
allele num: 32894
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.732C>T
  hgvsp: ENST00000574154.1:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.636C>T
  hgvsp: ENST00000301395.3:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.288C>T
  hgvsp: ENST00000573591.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.750C>T
  hgvsp: ENST00000381550.3:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-298C>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20526
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21900
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly244Gly
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

17-4462115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462115
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462115
    reference: chr 17
allele count: 1
allele frequency: 5.487871803314675e-5
allele num: 18222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.581G>A
  hgvsp: ENSP00000301395.3:p.Arg194Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.677G>A
  hgvsp: ENSP00000458307.1:p.Arg226Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.695G>A
  hgvsp: ENSP00000370962.3:p.Arg232Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.233G>A
  hgvsp: ENSP00000461230.1:p.Arg78Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-353G>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35137
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32207
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3950
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5461
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Arg226Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

17-4462130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462130
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462130
    reference: chr 17
allele count: 3
allele frequency: 1.736111111111111e-4
allele num: 17280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.680G>A
  hgvsp: ENSP00000370962.3:p.Arg227Lys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-368G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.662G>A
  hgvsp: ENSP00000458307.1:p.Arg221Lys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.218G>A
  hgvsp: ENSP00000461230.1:p.Arg73Lys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.566G>A
  hgvsp: ENSP00000301395.3:p.Arg189Lys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31416
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
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genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg221Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-4462135-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462135
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 17098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.213G>T
  hgvsp: ENST00000573591.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.675G>T
  hgvsp: ENST00000381550.3:c.675G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.657G>T
  hgvsp: ENST00000574154.1:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.561G>T
  hgvsp: ENST00000301395.3:c.561G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-373G>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35208
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 31786
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu219Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-4462135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462135
    reference: chr 17
allele count: 1
allele frequency: 5.848637267516669e-5
allele num: 17098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-373G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.657G>A
  hgvsp: ENST00000574154.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.213G>A
  hgvsp: ENST00000573591.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.675G>A
  hgvsp: ENST00000381550.3:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.561G>A
  hgvsp: ENST00000301395.3:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu219Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-4462137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462137
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462137
    reference: chr 17
allele count: 1
allele frequency: 5.847953216374269e-5
allele num: 17100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.559C>T
  hgvsp: ENST00000301395.3:c.559C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-375C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.211C>T
  hgvsp: ENST00000573591.1:c.211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.673C>T
  hgvsp: ENST00000381550.3:c.673C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.655C>T
  hgvsp: ENST00000574154.1:c.655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5154
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu219Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

17-4462150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462150
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462150
    reference: chr 17
allele count: 1
allele frequency: 5.971575301564553e-5
allele num: 16746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.546G>A
  hgvsp: ENST00000301395.3:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.198G>A
  hgvsp: ENST00000573591.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.660G>A
  hgvsp: ENST00000381550.3:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.642G>A
  hgvsp: ENST00000574154.1:c.642G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-388G>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32147
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu214Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-4462166-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462166
    reference: chr 17
allele count: 1
allele frequency: 6.025548324897566e-5
allele num: 16596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.530C>A
  hgvsp: ENSP00000301395.3:p.Ala177Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.182C>A
  hgvsp: ENSP00000461230.1:p.Ala61Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.626C>A
  hgvsp: ENSP00000458307.1:p.Ala209Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.644C>A
  hgvsp: ENSP00000370962.3:p.Ala215Asp
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-404C>A
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31936
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala209Asp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-4462170-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462170
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462170
    reference: chr 17
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.526C>G
  hgvsp: ENSP00000301395.3:p.Leu176Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-408C>G
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.622C>G
  hgvsp: ENSP00000458307.1:p.Leu208Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.640C>G
  hgvsp: ENSP00000370962.3:p.Leu214Val
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.178C>G
  hgvsp: ENSP00000461230.1:p.Leu60Val
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31704
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu208Val
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-4462172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462172
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462172
    reference: chr 17
allele count: 3
allele frequency: 1.813346228239845e-4
allele num: 16544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.176C>T
  hgvsp: ENSP00000461230.1:p.Thr59Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.638C>T
  hgvsp: ENSP00000370962.3:p.Thr213Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.620C>T
  hgvsp: ENSP00000458307.1:p.Thr207Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.524C>T
  hgvsp: ENSP00000301395.3:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-410C>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr207Met
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS

17-4462173-T-TGGTGGGGCCCACTAGCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462173
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462190
    reference: chr 17
allele count: 1
allele frequency: 6.037189084762135e-5
allele num: 16564
alternate allele: TGGTGGGGCCCACTAGCA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsp: ENSP00000461230.1:p.Thr59CysfsTer2
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsp: ENSP00000370962.3:p.Thr213CysfsTer2
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsp: ENSP00000301395.3:p.Thr175CysfsTer2
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsp: ENSP00000458307.1:p.Thr207CysfsTer2
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5657
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr207CysfsTer2
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

17-4462180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462180
    reference: chr 17
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.168C>T
  hgvsp: ENST00000573591.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.516C>T
  hgvsp: ENST00000301395.3:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-418C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.612C>T
  hgvsp: ENST00000574154.1:c.612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.630C>T
  hgvsp: ENST00000381550.3:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32823
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly204Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-4462190-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462190
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462190
    reference: chr 17
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.602T>A
  hgvsp: ENSP00000458307.1:p.Leu201Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.158T>A
  hgvsp: ENSP00000461230.1:p.Leu53Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-428T>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.506T>A
  hgvsp: ENSP00000301395.3:p.Leu169Gln
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.620T>A
  hgvsp: ENSP00000370962.3:p.Leu207Gln
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31820
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu201Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

17-4462191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462191
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462191
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.505C>T
  hgvsp: ENST00000301395.3:c.505C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.157C>T
  hgvsp: ENST00000573591.1:c.157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-429C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.601C>T
  hgvsp: ENST00000574154.1:c.601C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.619C>T
  hgvsp: ENST00000381550.3:c.619C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 661
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 5156
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu201Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-4462194-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462194
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462194
    reference: chr 17
allele count: 2
allele frequency: 1.208313194780087e-4
allele num: 16552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.440-432C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.598C>T
  hgvsp: ENSP00000458307.1:p.Arg200Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.154C>T
  hgvsp: ENSP00000461230.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.502C>T
  hgvsp: ENSP00000301395.3:p.Arg168Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.616C>T
  hgvsp: ENSP00000370962.3:p.Arg206Cys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34797
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Arg200Cys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

17-4462207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462207
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462207
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.489C>T
  hgvsp: ENST00000301395.3:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.603C>T
  hgvsp: ENST00000381550.3:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.141C>T
  hgvsp: ENST00000573591.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.585C>T
  hgvsp: ENST00000574154.1:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.439+431C>T
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30430
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg195Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-4462209-G-GGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462209
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462212
    reference: chr 17
allele count: 5
allele frequency: 3.041732570872369e-4
allele num: 16438
alternate allele: GGCC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.580_582dupGGC
  hgvsp: ENSP00000458307.1:p.Gly194dup
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.439+426_439+428dupGGC
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.598_600dupGGC
  hgvsp: ENSP00000370962.3:p.Gly200dup
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.136_138dupGGC
  hgvsp: ENSP00000461230.1:p.Gly46dup
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.484_486dupGGC
  hgvsp: ENSP00000301395.3:p.Gly162dup
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34069
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31053
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly194dup
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

17-4462209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462209
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462209
    reference: chr 17
allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.487C>T
  hgvsp: ENSP00000301395.3:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.139C>T
  hgvsp: ENSP00000461230.1:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.583C>T
  hgvsp: ENSP00000458307.1:p.Arg195Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.439+429C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.601C>T
  hgvsp: ENSP00000370962.3:p.Arg201Cys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31053
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg195Cys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-4462212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462212
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462212
    reference: chr 17
allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.439+426G>A
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.136G>A
  hgvsp: ENSP00000461230.1:p.Gly46Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.484G>A
  hgvsp: ENSP00000301395.3:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.580G>A
  hgvsp: ENSP00000458307.1:p.Gly194Ser
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.598G>A
  hgvsp: ENSP00000370962.3:p.Gly200Ser
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly194Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

17-4462218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4462218
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 4462218
    reference: chr 17
allele count: 8
allele frequency: 4.80884828083674e-4
allele num: 16636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000461230
  ensembl transcript: ENST00000573591
  gene symbol: GGT6
  hgvsc: ENST00000573591.1:c.130C>T
  hgvsp: ENSP00000461230.1:p.Arg44Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000301395
  ensembl transcript: ENST00000301395
  gene symbol: GGT6
  hgvsc: ENST00000301395.3:c.478C>T
  hgvsp: ENSP00000301395.3:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000459662
  ensembl transcript: ENST00000574584
  gene symbol: GGT6
  hgvsc: ENST00000574584.1:c.439+420C>T
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000370962
  ensembl transcript: ENST00000381550
  gene symbol: GGT6
  hgvsc: ENST00000381550.3:c.592C>T
  hgvsp: ENSP00000370962.3:p.Arg198Cys
  variant of: http://identifiers.org/hgnc/26891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167741
  ensembl protein: ENSP00000458307
  ensembl transcript: ENST00000574154
  gene symbol: GGT6
  hgvsc: ENST00000574154.1:c.574C>T
  hgvsp: ENSP00000458307.1:p.Arg192Cys
  variant of: http://identifiers.org/hgnc/26891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33974
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31642
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg192Cys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 768
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.481143310837634e-5
allele num: 40304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.801441152922338e-3
allele num: 4996
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.995211492418196e-4
allele num: 5012
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 2.574e0

DP
type: SiteQuality
SIO_000300: 7.37201e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 2.361e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 2369
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 2.100840336134454e-3
allele num: 476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.584786053882726e-4
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.797e0

MQRankSum
type: SiteQuality
SIO_000300: -1.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

FS
type: SiteQuality
SIO_000300: 2.715e0

QD
type: SiteQuality
SIO_000300: 1.597e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

DP
type: SiteQuality
SIO_000300: 7.23854e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.570033410434336e-5
allele num: 38910
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.14485e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

QD
type: SiteQuality
SIO_000300: 6.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.375e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.592e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.362e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.242152466367713e-4
allele num: 4460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2484
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.89077274209325e-4
allele num: 6134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 7.05432e5

QD
type: SiteQuality
SIO_000300: 1.331e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.412e-1

MQ
type: SiteQuality
SIO_000300: 5.75e1

MQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.481721545242416e-4
allele num: 7714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 3.796e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 7.05196e5

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 2.115059221658206e-3
allele num: 4728
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 6.726457399103139e-3
allele num: 446
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38004
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 1.801e0

DP
type: SiteQuality
SIO_000300: 6.96192e5

QD
type: SiteQuality
SIO_000300: 1.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 186
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variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.499250374812594e-4
allele num: 6670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.028e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.41e0

FS
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 6.82919e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 7.374631268436578e-4
allele num: 4068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

QD
type: SiteQuality
SIO_000300: 1.917e1

DP
type: SiteQuality
SIO_000300: 6.74946e5

VQSLOD
type: SiteQuality
SIO_000300: -4.475e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.635055591890124e-4
allele num: 6116
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.723543605653223e-4
allele num: 5802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

MQRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.886e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

African
type: Population
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.628729032984352e-5
allele num: 35532
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 5414
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

DP
type: SiteQuality
SIO_000300: 6.70019e5

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 370
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European (Non-Finnish)
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allele count: 7
allele frequency: 1.966292134831461e-4
allele num: 35600
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.589331952356292e-4
allele num: 3862
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.73973556019485e-4
allele num: 5748
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.764e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2096
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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African
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allele num: 5832
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 35978
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.848e1

VQSLOD
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 6731
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South Asian
type: Population
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.77947634665629e-5
allele num: 35978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.88832e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

FS
type: SiteQuality
SIO_000300: 4.921e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.652e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.415651232060655e-5
allele num: 36930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 7.11498e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 1.965e0

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 8372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.889134776272467e-4
allele num: 37054
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4696
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.13931e5

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

FS
type: SiteQuality
SIO_000300: 9.728e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.371e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 3784
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variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
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GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37314
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.3003300330033e-4
allele num: 6060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2096
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

QD
type: SiteQuality
SIO_000300: 1.035e1

DP
type: SiteQuality
SIO_000300: 7.21654e5

FS
type: SiteQuality
SIO_000300: 2.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.536e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
all individuals: 978
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variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1913
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variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.039983680130559e-4
allele num: 4902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.956e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

DP
type: SiteQuality
SIO_000300: 7.24305e5

FS
type: SiteQuality
SIO_000300: 4.265e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

QD
type: SiteQuality
SIO_000300: 1.503e1

GenotypeQuality
all individuals: 126
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 537
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variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.212299915754001e-4
allele num: 4748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.811686282678888e-5
allele num: 38404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 1.221e0

DP
type: SiteQuality
SIO_000300: 7.44993e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.252e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 339
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.536783358701167e-5
allele num: 39420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2316
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 7.65095e5

FS
type: SiteQuality
SIO_000300: 1.808e0

QD
type: SiteQuality
SIO_000300: 8.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.514e0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
all individuals: 26556
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GenotypeQuality
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GenotypeQuality
all individuals: 716
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GenotypeQuality
all individuals: 11685
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GenotypeQuality
all individuals: 122
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.04261005496445e-5
allele num: 39662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

QD
type: SiteQuality
SIO_000300: 1.233e1

VQSLOD
type: SiteQuality
SIO_000300: -2.257e-1

DP
type: SiteQuality
SIO_000300: 7.67694e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.286e0

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 394
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GenotypeQuality
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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variant carriers: 4

African
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allele count: 12
allele frequency: 1.86219739292365e-3
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 1.428923380142892e-3
allele num: 40590
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2376
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.938819474364498e-3
allele num: 4642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.512562814070352e-3
allele num: 398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

QD
type: SiteQuality
SIO_000300: 1.199e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 7.80888e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.926e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 1.491e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1300
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.491e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.926e0

DP
type: SiteQuality
SIO_000300: 7.80888e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 126
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variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.651162790697675e-4
allele num: 6450
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

QD
type: SiteQuality
SIO_000300: 1.282e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 2.431e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.533e0

DP
type: SiteQuality
SIO_000300: 7.8685e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
all individuals: 4082
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3609
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GenotypeQuality
all individuals: 305
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5024
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East Asian
type: Population
allele count: 1
allele frequency: 1.805054151624549e-4
allele num: 5540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.751340809361287e-5
allele num: 41020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 2.818e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.082e0

DP
type: SiteQuality
SIO_000300: 7.90389e5

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 727
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.422950184144214e-5
allele num: 41272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 7.97191e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 1.493e0

QD
type: SiteQuality
SIO_000300: 1.326e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 2620
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2012
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 4.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.498875168724692e-5
allele num: 40006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.903693476009665e-4
allele num: 5794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.512679162072767e-4
allele num: 1814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.944e2

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

DP
type: SiteQuality
SIO_000300: 9.1464e5

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.689e0

FS
type: SiteQuality
SIO_000300: 4.42945e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

QD
type: SiteQuality
SIO_000300: 2.1e-1

GenotypeQuality
all individuals: 486
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50004
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.384657989476599e-4
allele num: 7222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 1.033767e6

FS
type: SiteQuality
SIO_000300: 1.281e0

QD
type: SiteQuality
SIO_000300: 1.369e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

GenotypeQuality
all individuals: 20361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.337971635001338e-4
allele num: 7474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.968723886832995e-5
allele num: 50262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.757e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.558e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: -3.25e-2

DP
type: SiteQuality
SIO_000300: 1.042333e6

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.956635692161067e-5
allele num: 50364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.364e0

DP
type: SiteQuality
SIO_000300: 1.042993e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.205e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

FS
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.217e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 7.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 1.320306311064167e-4
allele num: 7574
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.219591595146493e-3
allele num: 6758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.040098e6

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.901915264074289e-4
allele num: 3446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.01e0

DP
type: SiteQuality
SIO_000300: 1.052625e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 2.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: -4.438e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.330849081714134e-4
allele num: 7514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.052148e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.409e0

FS
type: SiteQuality
SIO_000300: 1.204e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.009e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 2778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21391
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.994248282473238e-5
allele num: 50072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.045894e6

VQSLOD
type: SiteQuality
SIO_000300: -1.346e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
SIO_000300: 8.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.107e0

GenotypeQuality
all individuals: 430
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.336898395721925e-4
allele num: 7480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.335e0

FS
type: SiteQuality
SIO_000300: 1.688e0

DP
type: SiteQuality
SIO_000300: 1.046596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 26791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.122082585278277e-4
allele num: 8912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.37e0

DP
type: SiteQuality
SIO_000300: 1.038137e6

FS
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.458e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

GenotypeQuality
all individuals: 2278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.613423685059697e-4
allele num: 6198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.6019e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.485e0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.507753335737469e-5
allele num: 44368
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.26404e5

MQ
type: SiteQuality
SIO_000300: 6.072e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.368209160233032e-5
allele num: 42226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.302e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.531e0

DP
type: SiteQuality
SIO_000300: 8.81999e5

QD
type: SiteQuality
SIO_000300: 4.07e0

GenotypeQuality
all individuals: 1392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13615
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.59794242959576e-5
allele num: 38492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 8.18187e5

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 192
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variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.136752136752137e-4
allele num: 4680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

FS
type: SiteQuality
SIO_000300: 1.392e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.17873e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.641e0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.817e-1

QD
type: SiteQuality
SIO_000300: 4.76e0

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 1938
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GenotypeQuality
all individuals: 493
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.594387755102041e-4
allele num: 6272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

FS
type: SiteQuality
SIO_000300: 1.392e0

DP
type: SiteQuality
SIO_000300: 8.17873e5

VQSLOD
type: SiteQuality
SIO_000300: -7.817e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.76e0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
all individuals: 272
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2088
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.611343860779891e-4
allele num: 6206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

DP
type: SiteQuality
SIO_000300: 8.05874e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.849e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 6.12e0

GenotypeQuality
all individuals: 251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 844
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GenotypeQuality
all individuals: 178
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.014452027298274e-4
allele num: 4982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.097755090839234e-4
allele num: 36438
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.274259949029602e-3
allele num: 10202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.037e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

DP
type: SiteQuality
SIO_000300: 7.88988e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.267e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.493599956051201e-5
allele num: 36406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.659475605708596e-4
allele num: 6026
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.88617e5

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

FS
type: SiteQuality
SIO_000300: 1.642e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.377080308276555e-5
allele num: 35812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.896e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

DP
type: SiteQuality
SIO_000300: 7.75424e5

VQSLOD
type: SiteQuality
SIO_000300: -9.644e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 7.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.668335001668335e-4
allele num: 5994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.644e-1

FS
type: SiteQuality
SIO_000300: 7.896e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 7.24e0

DP
type: SiteQuality
SIO_000300: 7.75424e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

GenotypeQuality
all individuals: 860
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 70
bin: 8.25e1
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GenotypeQuality
all individuals: 240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.040437823046519e-5
allele num: 32890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

DP
type: SiteQuality
SIO_000300: 7.29182e5

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.08908933646361e-5
allele num: 32372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.322e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.00664384940608e-4
allele num: 9934
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2960
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.69e-1

QD
type: SiteQuality
SIO_000300: 5.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.11793773678142e-5
allele num: 24284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

InbreedingCoeff
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VQSLOD
type: SiteQuality
SIO_000300: -4.975e0

DP
type: SiteQuality
SIO_000300: 6.1228e5

QD
type: SiteQuality
SIO_000300: 1.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.557488292076843e-5
allele num: 20926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 5.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.77536e5

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.57030223390276e-4
allele num: 1522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.264417845484222e-4
allele num: 9190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

DP
type: SiteQuality
SIO_000300: 5.75956e5

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 7.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.136880400181901e-4
allele num: 8796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.406e0

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.229e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.97e-2

DP
type: SiteQuality
SIO_000300: 5.37931e5

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 3844
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.153535586572846e-4
allele num: 17338
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.968e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 8696
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Latino
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.338329764453962e-4
allele num: 7472
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 366
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 4.453681710213777e-4
allele num: 6736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 178
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.123e0

DP
type: SiteQuality
SIO_000300: 2.86759e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.993e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 7.27e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 6.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.441753171856978e-4
allele num: 6936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.993e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.27e0

DP
type: SiteQuality
SIO_000300: 2.86759e5

FS
type: SiteQuality
SIO_000300: 4.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.443834825295986e-4
allele num: 6926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

DP
type: SiteQuality
SIO_000300: 2.86431e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.805e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.788e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 5.332e0

QD
type: SiteQuality
SIO_000300: 6.03e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.523461304082876e-4
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.86e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

DP
type: SiteQuality
SIO_000300: 2.81559e5

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-4
allele num: 6646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.646e0

DP
type: SiteQuality
SIO_000300: 2.78239e5

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.411e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

QD
type: SiteQuality
SIO_000300: 6.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 97
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.504664459825459e-4
allele num: 6646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

FS
type: SiteQuality
SIO_000300: 1.984e0

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: -2.655e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.106e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 2.78355e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.599816007359706e-4
allele num: 2174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.501501501501501e-4
allele num: 6660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517911353976928e-4
allele num: 6588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.81927e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 6.143e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.499250374812594e-4
allele num: 6670
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.779999999999999e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 176
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.490757304710793e-4
allele num: 6708
num of homozygotes: 0

MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele num: 176
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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African
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.090234857849196e-4
allele num: 6472
num of homozygotes: 0

East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6964
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.577e0

DP
type: SiteQuality
SIO_000300: 2.86352e5

VQSLOD
type: SiteQuality
SIO_000300: -5.872000000000001e-1

GenotypeQuality
all individuals: 3303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
SIO_000300: 2.77925e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.355e1

FS
type: SiteQuality
SIO_000300: 4.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 516
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.072961373390558e-2
allele num: 466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

QD
type: SiteQuality
SIO_000300: 1.446e1

DP
type: SiteQuality
SIO_000300: 2.81164e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

MQ
type: SiteQuality
SIO_000300: 5.759e1

GenotypeQuality
all individuals: 3402
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.789400278940028e-4
allele num: 7170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 5.759e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 2.81164e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.192107995846313e-4
allele num: 1926
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

DP
type: SiteQuality
SIO_000300: 2.82706e5

VQSLOD
type: SiteQuality
SIO_000300: -1.79e0