14-34269194-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269194
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269194
    reference: chr 14
allele count: 2
allele frequency: 1.714031058242775e-5
allele num: 116684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1591G>A
  hgvsp: ENSP00000448916.1:p.Val531Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1603G>A
  hgvsp: ENSP00000448373.1:p.Val535Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1585G>A
  hgvsp: ENSP00000319610.5:p.Val529Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1696G>A
  hgvsp: ENSP00000450392.1:p.Val566Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1681G>A
  hgvsp: ENSP00000348460.4:p.Val561Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1642G>A
  hgvsp: ENSP00000350446.5:p.Val548Met
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val561Met
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

14-34269197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269197
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269197
    reference: chr 14
allele count: 1
allele frequency: 8.604371020478403e-6
allele num: 116220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1699G>A
  hgvsp: ENSP00000450392.1:p.Glu567Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1606G>A
  hgvsp: ENSP00000448373.1:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1684G>A
  hgvsp: ENSP00000348460.4:p.Glu562Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1645G>A
  hgvsp: ENSP00000350446.5:p.Glu549Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1594G>A
  hgvsp: ENSP00000448916.1:p.Glu532Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1588G>A
  hgvsp: ENSP00000319610.5:p.Glu530Lys
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
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genotype quality: GenotypeQuality
  all individuals: 67
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46289
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu562Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

14-34269201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269201
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269201
    reference: chr 14
allele count: 1
allele frequency: 8.663409224798143e-6
allele num: 115428
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1688G>A
  hgvsp: ENSP00000348460.4:p.Ser563Asn
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1598G>A
  hgvsp: ENSP00000448916.1:p.Ser533Asn
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1592G>A
  hgvsp: ENSP00000319610.5:p.Ser531Asn
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1703G>A
  hgvsp: ENSP00000450392.1:p.Ser568Asn
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1610G>A
  hgvsp: ENSP00000448373.1:p.Ser537Asn
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1649G>A
  hgvsp: ENSP00000350446.5:p.Ser550Asn
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30660
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser563Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

14-34269202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269202
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269202
    reference: chr 14
allele count: 5
allele frequency: 4.345558838866679e-5
allele num: 115060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1593C>T
  hgvsp: ENST00000346562.2:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1599C>T
  hgvsp: ENST00000548645.1:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1704C>T
  hgvsp: ENST00000551492.1:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1650C>T
  hgvsp: ENST00000357798.5:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1611C>T
  hgvsp: ENST00000551634.1:c.1611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1689C>T
  hgvsp: ENST00000356141.4:c.1689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser563Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

14-34269203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269203
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269203
    reference: chr 14
allele count: 1
allele frequency: 8.691570914527092e-6
allele num: 115054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1612G>A
  hgvsp: ENSP00000448373.1:p.Glu538Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1594G>A
  hgvsp: ENSP00000319610.5:p.Glu532Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1651G>A
  hgvsp: ENSP00000350446.5:p.Glu551Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1600G>A
  hgvsp: ENSP00000448916.1:p.Glu534Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1690G>A
  hgvsp: ENSP00000348460.4:p.Glu564Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1705G>A
  hgvsp: ENSP00000450392.1:p.Glu569Lys
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu564Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

14-34269203-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269203
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269203
    reference: chr 14
allele count: 1
allele frequency: 8.691570914527092e-6
allele num: 115054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1651G>T
  hgvsp: ENSP00000350446.5:p.Glu551Ter
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1594G>T
  hgvsp: ENSP00000319610.5:p.Glu532Ter
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1690G>T
  hgvsp: ENSP00000348460.4:p.Glu564Ter
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1600G>T
  hgvsp: ENSP00000448916.1:p.Glu534Ter
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1612G>T
  hgvsp: ENSP00000448373.1:p.Glu538Ter
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1705G>T
  hgvsp: ENSP00000450392.1:p.Glu569Ter
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu564Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

14-34269211-C-CCTGCGGCTGCAGAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269211
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269225
    reference: chr 14
allele count: 1
allele frequency: 8.906305664410403e-6
allele num: 112280
alternate allele: CCTGCGGCTGCAGAA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsp: ENSP00000448916.1:p.Glu543GlyfsTer115
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsp: ENSP00000450392.1:p.Glu578GlyfsTer115
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsp: ENSP00000319610.5:p.Glu541GlyfsTer115
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsp: ENSP00000448373.1:p.Glu547GlyfsTer115
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsp: ENSP00000350446.5:p.Glu560GlyfsTer115
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsp: ENSP00000348460.4:p.Glu573GlyfsTer115
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 28729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu573GlyfsTer115
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

14-34269212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269212
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269212
    reference: chr 14
allele count: 1
allele frequency: 8.907892392659896e-6
allele num: 112260
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1699C>T
  hgvsp: ENST00000356141.4:c.1699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1609C>T
  hgvsp: ENST00000548645.1:c.1609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1714C>T
  hgvsp: ENST00000551492.1:c.1714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1660C>T
  hgvsp: ENST00000357798.5:c.1660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1621C>T
  hgvsp: ENST00000551634.1:c.1621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1603C>T
  hgvsp: ENST00000346562.2:c.1603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu567Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

14-34269225-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269225
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269225
    reference: chr 14
allele count: 1
allele frequency: 9.407691728757432e-6
allele num: 106296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1622A>G
  hgvsp: ENSP00000448916.1:p.Asn541Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1634A>G
  hgvsp: ENSP00000448373.1:p.Asn545Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1727A>G
  hgvsp: ENSP00000450392.1:p.Asn576Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1712A>G
  hgvsp: ENSP00000348460.4:p.Asn571Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1673A>G
  hgvsp: ENSP00000350446.5:p.Asn558Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1616A>G
  hgvsp: ENSP00000319610.5:p.Asn539Ser
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn571Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

14-34269228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269228
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269228
    reference: chr 14
allele count: 3
allele frequency: 2.825923134890731e-5
allele num: 106160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1715G>A
  hgvsp: ENSP00000348460.4:p.Cys572Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1730G>A
  hgvsp: ENSP00000450392.1:p.Cys577Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1637G>A
  hgvsp: ENSP00000448373.1:p.Cys546Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1676G>A
  hgvsp: ENSP00000350446.5:p.Cys559Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1619G>A
  hgvsp: ENSP00000319610.5:p.Cys540Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1625G>A
  hgvsp: ENSP00000448916.1:p.Cys542Tyr
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24631
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys572Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

14-34269232-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269232
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269232
    reference: chr 14
allele count: 2
allele frequency: 1.952362358453729e-5
allele num: 102440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1641G>C
  hgvsp: ENSP00000448373.1:p.Glu547Asp
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1680G>C
  hgvsp: ENSP00000350446.5:p.Glu560Asp
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1734G>C
  hgvsp: ENSP00000450392.1:p.Glu578Asp
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1623G>C
  hgvsp: ENSP00000319610.5:p.Glu541Asp
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1719G>C
  hgvsp: ENSP00000348460.4:p.Glu573Asp
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1629G>C
  hgvsp: ENSP00000448916.1:p.Glu543Asp
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21436
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu573Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

14-34269236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269236
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269236
    reference: chr 14
allele count: 1
allele frequency: 9.928909011477819e-6
allele num: 100716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1684C>T
  hgvsp: ENSP00000350446.5:p.Leu562Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1645C>T
  hgvsp: ENSP00000448373.1:p.Leu549Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1738C>T
  hgvsp: ENSP00000450392.1:p.Leu580Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1723C>T
  hgvsp: ENSP00000348460.4:p.Leu575Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1633C>T
  hgvsp: ENSP00000448916.1:p.Leu545Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1627C>T
  hgvsp: ENSP00000319610.5:p.Leu543Phe
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20248
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16493
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu575Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

14-34269237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269237
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269237
    reference: chr 14
allele count: 1
allele frequency: 9.986019572598363e-6
allele num: 100140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1739T>C
  hgvsp: ENSP00000450392.1:p.Leu580Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1724T>C
  hgvsp: ENSP00000348460.4:p.Leu575Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1646T>C
  hgvsp: ENSP00000448373.1:p.Leu549Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1628T>C
  hgvsp: ENSP00000319610.5:p.Leu543Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1685T>C
  hgvsp: ENSP00000350446.5:p.Leu562Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1634T>C
  hgvsp: ENSP00000448916.1:p.Leu545Pro
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16854
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu575Pro
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

14-34269240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269240
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269240
    reference: chr 14
allele count: 1
allele frequency: 1.027221366204417e-5
allele num: 97350
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1727C>T
  hgvsp: ENSP00000348460.4:p.Thr576Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1649C>T
  hgvsp: ENSP00000448373.1:p.Thr550Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1637C>T
  hgvsp: ENSP00000448916.1:p.Thr546Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1688C>T
  hgvsp: ENSP00000350446.5:p.Thr563Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1742C>T
  hgvsp: ENSP00000450392.1:p.Thr581Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1631C>T
  hgvsp: ENSP00000319610.5:p.Thr544Met
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr576Met
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-34269244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269244
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269244
    reference: chr 14
allele count: 2
allele frequency: 2.076627556847679e-5
allele num: 96310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1731C>T
  hgvsp: ENST00000356141.4:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1641C>T
  hgvsp: ENST00000548645.1:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1653C>T
  hgvsp: ENST00000551634.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1692C>T
  hgvsp: ENST00000357798.5:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1746C>T
  hgvsp: ENST00000551492.1:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1635C>T
  hgvsp: ENST00000346562.2:c.1635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18265
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser577Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

14-34269244-CGACAGCGCCAAGGACTCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269244
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269226
    reference: chr 14
allele count: 1
allele frequency: 1.03831377842384e-5
allele num: 96310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsp: ENSP00000450392.1:p.Lys586_Ala591del
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsp: ENSP00000350446.5:p.Lys568_Ala573del
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsp: ENSP00000348460.4:p.Lys581_Ala586del
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsp: ENSP00000448373.1:p.Lys555_Ala560del
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsp: ENSP00000448916.1:p.Lys551_Ala556del
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsp: ENSP00000319610.5:p.Lys549_Ala554del
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys581_Ala586del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: CGACAGCGCCAAGGACTCG
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/14-34269247-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269247
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269247
    reference: chr 14
allele count: 1
allele frequency: 1.052343569128449e-5
allele num: 95026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1734C>A
  hgvsp: ENSP00000348460.4:p.Asp578Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1695C>A
  hgvsp: ENSP00000350446.5:p.Asp565Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1656C>A
  hgvsp: ENSP00000448373.1:p.Asp552Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1644C>A
  hgvsp: ENSP00000448916.1:p.Asp548Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1638C>A
  hgvsp: ENSP00000319610.5:p.Asp546Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1749C>A
  hgvsp: ENSP00000450392.1:p.Asp583Glu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp578Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-34269250-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269250
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269250
    reference: chr 14
allele count: 1
allele frequency: 1.069061364122301e-5
allele num: 93540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1647C>T
  hgvsp: ENST00000548645.1:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1641C>T
  hgvsp: ENST00000346562.2:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1659C>T
  hgvsp: ENST00000551634.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1698C>T
  hgvsp: ENST00000357798.5:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1752C>T
  hgvsp: ENST00000551492.1:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1737C>T
  hgvsp: ENST00000356141.4:c.1737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser579Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

14-34269254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269254
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269254
    reference: chr 14
allele count: 1
allele frequency: 1.096491228070175e-5
allele num: 91200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1702A>G
  hgvsp: ENSP00000350446.5:p.Lys568Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1651A>G
  hgvsp: ENSP00000448916.1:p.Lys551Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1663A>G
  hgvsp: ENSP00000448373.1:p.Lys555Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1741A>G
  hgvsp: ENSP00000348460.4:p.Lys581Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1756A>G
  hgvsp: ENSP00000450392.1:p.Lys586Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1645A>G
  hgvsp: ENSP00000319610.5:p.Lys549Glu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13122
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys581Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

14-34269259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269259
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269259
    reference: chr 14
allele count: 1
allele frequency: 1.128515325238117e-5
allele num: 88612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1707C>T
  hgvsp: ENST00000357798.5:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1656C>T
  hgvsp: ENST00000548645.1:c.1656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1761C>T
  hgvsp: ENST00000551492.1:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1746C>T
  hgvsp: ENST00000356141.4:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1668C>T
  hgvsp: ENST00000551634.1:c.1668C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1650C>T
  hgvsp: ENST00000346562.2:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16707
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp582Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-34269265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269265
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269265
    reference: chr 14
allele count: 5
allele frequency: 5.910305208160949e-5
allele num: 84598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1713C>T
  hgvsp: ENST00000357798.5:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1674C>T
  hgvsp: ENST00000551634.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1662C>T
  hgvsp: ENST00000548645.1:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1752C>T
  hgvsp: ENST00000356141.4:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1767C>T
  hgvsp: ENST00000551492.1:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1656C>T
  hgvsp: ENST00000346562.2:c.1656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10747
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp584Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

14-34269269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269269
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269269
    reference: chr 14
allele count: 1
allele frequency: 1.236338460016814e-5
allele num: 80884
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1756G>A
  hgvsp: ENSP00000348460.4:p.Ala586Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1678G>A
  hgvsp: ENSP00000448373.1:p.Ala560Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1660G>A
  hgvsp: ENSP00000319610.5:p.Ala554Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1717G>A
  hgvsp: ENSP00000350446.5:p.Ala573Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1666G>A
  hgvsp: ENSP00000448916.1:p.Ala556Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1771G>A
  hgvsp: ENSP00000450392.1:p.Ala591Thr
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala586Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

14-34269274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269274
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269274
    reference: chr 14
allele count: 2
allele frequency: 2.622400545459314e-5
allele num: 76266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1665C>T
  hgvsp: ENST00000346562.2:c.1665C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1671C>T
  hgvsp: ENST00000548645.1:c.1671C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1776C>T
  hgvsp: ENST00000551492.1:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1683C>T
  hgvsp: ENST00000551634.1:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1761C>T
  hgvsp: ENST00000356141.4:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1722C>T
  hgvsp: ENST00000357798.5:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18359
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly587Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

14-34269275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269275
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269275
    reference: chr 14
allele count: 1
allele frequency: 1.311062747463094e-5
allele num: 76274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1684G>A
  hgvsp: ENSP00000448373.1:p.Glu562Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1777G>A
  hgvsp: ENSP00000450392.1:p.Glu593Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1672G>A
  hgvsp: ENSP00000448916.1:p.Glu558Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1762G>A
  hgvsp: ENSP00000348460.4:p.Glu588Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1723G>A
  hgvsp: ENSP00000350446.5:p.Glu575Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1666G>A
  hgvsp: ENSP00000319610.5:p.Glu556Lys
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu588Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

14-34269275-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269275
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269275
    reference: chr 14
allele count: 1
allele frequency: 1.311062747463094e-5
allele num: 76274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1777G>C
  hgvsp: ENSP00000450392.1:p.Glu593Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1672G>C
  hgvsp: ENSP00000448916.1:p.Glu558Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1723G>C
  hgvsp: ENSP00000350446.5:p.Glu575Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1762G>C
  hgvsp: ENSP00000348460.4:p.Glu588Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1666G>C
  hgvsp: ENSP00000319610.5:p.Glu556Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1684G>C
  hgvsp: ENSP00000448373.1:p.Glu562Gln
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu588Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

14-34269278-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269278
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269278
    reference: chr 14
allele count: 10
allele frequency: 1.338759772946343e-4
allele num: 74696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1669G>T
  hgvsp: ENSP00000319610.5:p.Ala557Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1780G>T
  hgvsp: ENSP00000450392.1:p.Ala594Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1675G>T
  hgvsp: ENSP00000448916.1:p.Ala559Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1687G>T
  hgvsp: ENSP00000448373.1:p.Ala563Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1726G>T
  hgvsp: ENSP00000350446.5:p.Ala576Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1765G>T
  hgvsp: ENSP00000348460.4:p.Ala589Ser
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17609
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18149
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala589Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-34269279-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269279
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269279
    reference: chr 14
allele count: 1
allele frequency: 1.36332651670075e-5
allele num: 73350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1670C>A
  hgvsp: ENSP00000319610.5:p.Ala557Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1781C>A
  hgvsp: ENSP00000450392.1:p.Ala594Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1688C>A
  hgvsp: ENSP00000448373.1:p.Ala563Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1676C>A
  hgvsp: ENSP00000448916.1:p.Ala559Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1766C>A
  hgvsp: ENSP00000348460.4:p.Ala589Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1727C>A
  hgvsp: ENSP00000350446.5:p.Ala576Glu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala589Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

14-34269279-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269279
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269279
    reference: chr 14
allele count: 1
allele frequency: 1.36332651670075e-5
allele num: 73350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1727C>G
  hgvsp: ENSP00000350446.5:p.Ala576Gly
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1670C>G
  hgvsp: ENSP00000319610.5:p.Ala557Gly
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1781C>G
  hgvsp: ENSP00000450392.1:p.Ala594Gly
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1676C>G
  hgvsp: ENSP00000448916.1:p.Ala559Gly
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1766C>G
  hgvsp: ENSP00000348460.4:p.Ala589Gly
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1688C>G
  hgvsp: ENSP00000448373.1:p.Ala563Gly
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9750
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala589Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

14-34269280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269280
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269280
    reference: chr 14
allele count: 3
allele frequency: 4.163775156141568e-5
allele num: 72050
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1767G>A
  hgvsp: ENST00000356141.4:c.1767G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1671G>A
  hgvsp: ENST00000346562.2:c.1671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1689G>A
  hgvsp: ENST00000551634.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1677G>A
  hgvsp: ENST00000548645.1:c.1677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1782G>A
  hgvsp: ENST00000551492.1:c.1782G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1728G>A
  hgvsp: ENST00000357798.5:c.1728G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5751
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26128
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala589Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

14-34269285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269285
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269285
    reference: chr 14
allele count: 5
allele frequency: 7.213758079409049e-5
allele num: 69312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1772C>T
  hgvsp: ENSP00000348460.4:p.Ala591Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1682C>T
  hgvsp: ENSP00000448916.1:p.Ala561Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1694C>T
  hgvsp: ENSP00000448373.1:p.Ala565Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1787C>T
  hgvsp: ENSP00000450392.1:p.Ala596Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1733C>T
  hgvsp: ENSP00000350446.5:p.Ala578Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1676C>T
  hgvsp: ENSP00000319610.5:p.Ala559Val
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17400
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6607
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala591Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/14-34269303-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269303
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269303
    reference: chr 14
allele count: 1
allele frequency: 1.628505357782627e-5
allele num: 61406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1700A>C
  hgvsp: ENSP00000448916.1:p.His567Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1694A>C
  hgvsp: ENSP00000319610.5:p.His565Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1712A>C
  hgvsp: ENSP00000448373.1:p.His571Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1790A>C
  hgvsp: ENSP00000348460.4:p.His597Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1805A>C
  hgvsp: ENSP00000450392.1:p.His602Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1751A>C
  hgvsp: ENSP00000350446.5:p.His584Pro
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3766
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7916
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His597Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-34269304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269304
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269304
    reference: chr 14
allele count: 1
allele frequency: 1.635804488647517e-5
allele num: 61132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1791C>T
  hgvsp: ENST00000356141.4:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1713C>T
  hgvsp: ENST00000551634.1:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1752C>T
  hgvsp: ENST00000357798.5:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1701C>T
  hgvsp: ENST00000548645.1:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1806C>T
  hgvsp: ENST00000551492.1:c.1806C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1695C>T
  hgvsp: ENST00000346562.2:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15247
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18557
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3645
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His597His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

14-34269324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269324
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269324
    reference: chr 14
allele count: 1
allele frequency: 1.820830298616169e-5
allele num: 54920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1721G>A
  hgvsp: ENSP00000448916.1:p.Arg574Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1772G>A
  hgvsp: ENSP00000350446.5:p.Arg591Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1811G>A
  hgvsp: ENSP00000348460.4:p.Arg604Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1733G>A
  hgvsp: ENSP00000448373.1:p.Arg578Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1715G>A
  hgvsp: ENSP00000319610.5:p.Arg572Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1826G>A
  hgvsp: ENSP00000450392.1:p.Arg609Gln
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13826
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg604Gln
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-34269326-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269326
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269326
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 55014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1717A>G
  hgvsp: ENSP00000319610.5:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1723A>G
  hgvsp: ENSP00000448916.1:p.Lys575Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1813A>G
  hgvsp: ENSP00000348460.4:p.Lys605Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1828A>G
  hgvsp: ENSP00000450392.1:p.Lys610Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1735A>G
  hgvsp: ENSP00000448373.1:p.Lys579Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1774A>G
  hgvsp: ENSP00000350446.5:p.Lys592Glu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17596
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13885
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys605Glu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

14-34269330-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269330
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269330
    reference: chr 14
allele count: 1
allele frequency: 1.855149896111606e-5
allele num: 53904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1778G>C
  hgvsp: ENSP00000350446.5:p.Arg593Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1727G>C
  hgvsp: ENSP00000448916.1:p.Arg576Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1832G>C
  hgvsp: ENSP00000450392.1:p.Arg611Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1721G>C
  hgvsp: ENSP00000319610.5:p.Arg574Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1817G>C
  hgvsp: ENSP00000348460.4:p.Arg606Pro
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1739G>C
  hgvsp: ENSP00000448373.1:p.Arg580Pro
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg606Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-34269332-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269332
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269330
    reference: chr 14
allele count: 1
allele frequency: 1.861850679575498e-5
allele num: 53710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1726_1727delAA
  hgvsp: ENSP00000319610.5:p.Lys576GlyfsTer53
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1783_1784delAA
  hgvsp: ENSP00000350446.5:p.Lys595GlyfsTer53
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1732_1733delAA
  hgvsp: ENSP00000448916.1:p.Lys578GlyfsTer53
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1744_1745delAA
  hgvsp: ENSP00000448373.1:p.Lys582GlyfsTer53
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1837_1838delAA
  hgvsp: ENSP00000450392.1:p.Lys613GlyfsTer53
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1822_1823delAA
  hgvsp: ENSP00000348460.4:p.Lys608GlyfsTer53
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15400
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys608GlyfsTer53
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: CAA
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

14-34269338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269338
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269338
    reference: chr 14
allele count: 1
allele frequency: 1.869508319312021e-5
allele num: 53490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1786G>A
  hgvsp: ENSP00000350446.5:p.Gly596Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1729G>A
  hgvsp: ENSP00000319610.5:p.Gly577Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1840G>A
  hgvsp: ENSP00000450392.1:p.Gly614Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1747G>A
  hgvsp: ENSP00000448373.1:p.Gly583Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1735G>A
  hgvsp: ENSP00000448916.1:p.Gly579Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1825G>A
  hgvsp: ENSP00000348460.4:p.Gly609Ser
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly609Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

14-34269338-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269338
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269338
    reference: chr 14
allele count: 1
allele frequency: 1.869508319312021e-5
allele num: 53490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1840G>T
  hgvsp: ENSP00000450392.1:p.Gly614Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1825G>T
  hgvsp: ENSP00000348460.4:p.Gly609Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1729G>T
  hgvsp: ENSP00000319610.5:p.Gly577Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1747G>T
  hgvsp: ENSP00000448373.1:p.Gly583Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1735G>T
  hgvsp: ENSP00000448916.1:p.Gly579Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1786G>T
  hgvsp: ENSP00000350446.5:p.Gly596Cys
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly609Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

14-34269340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269340
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269340
    reference: chr 14
allele count: 1
allele frequency: 1.872589041608928e-5
allele num: 53402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1737C>T
  hgvsp: ENST00000548645.1:c.1737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1749C>T
  hgvsp: ENST00000551634.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1827C>T
  hgvsp: ENST00000356141.4:c.1827C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1731C>T
  hgvsp: ENST00000346562.2:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1788C>T
  hgvsp: ENST00000357798.5:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1842C>T
  hgvsp: ENST00000551492.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9913
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly609Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

14-34269341-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269341
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269341
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 53860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1789G>A
  hgvsp: ENSP00000350446.5:p.Gly597Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1843G>A
  hgvsp: ENSP00000450392.1:p.Gly615Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1738G>A
  hgvsp: ENSP00000448916.1:p.Gly580Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1750G>A
  hgvsp: ENSP00000448373.1:p.Gly584Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1828G>A
  hgvsp: ENSP00000348460.4:p.Gly610Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1732G>A
  hgvsp: ENSP00000319610.5:p.Gly578Ser
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17449
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly610Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-34269342-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269342
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269342
    reference: chr 14
allele count: 1
allele frequency: 1.852194850898315e-5
allele num: 53990
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1829G>T
  hgvsp: ENSP00000348460.4:p.Gly610Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1739G>T
  hgvsp: ENSP00000448916.1:p.Gly580Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1844G>T
  hgvsp: ENSP00000450392.1:p.Gly615Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1733G>T
  hgvsp: ENSP00000319610.5:p.Gly578Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1790G>T
  hgvsp: ENSP00000350446.5:p.Gly597Val
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1751G>T
  hgvsp: ENSP00000448373.1:p.Gly584Val
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17469
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly610Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

14-34269346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269346
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269346
    reference: chr 14
allele count: 1
allele frequency: 1.817256669331976e-5
allele num: 55028
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1833C>T
  hgvsp: ENST00000356141.4:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1794C>T
  hgvsp: ENST00000357798.5:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1848C>T
  hgvsp: ENST00000551492.1:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1737C>T
  hgvsp: ENST00000346562.2:c.1737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1755C>T
  hgvsp: ENST00000551634.1:c.1755C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1743C>T
  hgvsp: ENST00000548645.1:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser611Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

14-34269347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269347
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269347
    reference: chr 14
allele count: 2
allele frequency: 3.577561534058386e-5
allele num: 55904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1834G>A
  hgvsp: ENSP00000348460.4:p.Ala612Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1756G>A
  hgvsp: ENSP00000448373.1:p.Ala586Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1849G>A
  hgvsp: ENSP00000450392.1:p.Ala617Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1744G>A
  hgvsp: ENSP00000448916.1:p.Ala582Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1738G>A
  hgvsp: ENSP00000319610.5:p.Ala580Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1795G>A
  hgvsp: ENSP00000350446.5:p.Ala599Thr
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12695
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala612Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

14-34269349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269349
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269349
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 57564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1740C>T
  hgvsp: ENST00000346562.2:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1758C>T
  hgvsp: ENST00000551634.1:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1797C>T
  hgvsp: ENST00000357798.5:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1851C>T
  hgvsp: ENST00000551492.1:c.1851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1836C>T
  hgvsp: ENST00000356141.4:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1746C>T
  hgvsp: ENST00000548645.1:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18332
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala612Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

14-34269350-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269350
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269350
    reference: chr 14
allele count: 1
allele frequency: 1.714442463310931e-5
allele num: 58328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1741A>T
  hgvsp: ENSP00000319610.5:p.Ser581Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1747A>T
  hgvsp: ENSP00000448916.1:p.Ser583Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1798A>T
  hgvsp: ENSP00000350446.5:p.Ser600Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1852A>T
  hgvsp: ENSP00000450392.1:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1837A>T
  hgvsp: ENSP00000348460.4:p.Ser613Cys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1759A>T
  hgvsp: ENSP00000448373.1:p.Ser587Cys
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19614
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser613Cys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/14-34269353-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269353
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269353
    reference: chr 14
allele count: 1
allele frequency: 1.673920321392702e-5
allele num: 59740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1855C>A
  hgvsp: ENSP00000450392.1:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1801C>A
  hgvsp: ENSP00000350446.5:p.Arg601Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1840C>A
  hgvsp: ENSP00000348460.4:p.Arg614Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1744C>A
  hgvsp: ENSP00000319610.5:p.Arg582Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1750C>A
  hgvsp: ENSP00000448916.1:p.Arg584Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1762C>A
  hgvsp: ENSP00000448373.1:p.Arg588Ser
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg614Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-34269354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269354
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269354
    reference: chr 14
allele count: 1
allele frequency: 1.66306336271412e-5
allele num: 60130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1763G>A
  hgvsp: ENSP00000448373.1:p.Arg588His
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1745G>A
  hgvsp: ENSP00000319610.5:p.Arg582His
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1856G>A
  hgvsp: ENSP00000450392.1:p.Arg619His
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1802G>A
  hgvsp: ENSP00000350446.5:p.Arg601His
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1751G>A
  hgvsp: ENSP00000448916.1:p.Arg584His
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1841G>A
  hgvsp: ENSP00000348460.4:p.Arg614His
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8643
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg614His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

14-34269355-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269355
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269355
    reference: chr 14
allele count: 1
allele frequency: 1.644033801334955e-5
allele num: 60826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1746C>G
  hgvsp: ENST00000346562.2:c.1746C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1803C>G
  hgvsp: ENST00000357798.5:c.1803C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1764C>G
  hgvsp: ENST00000551634.1:c.1764C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1857C>G
  hgvsp: ENST00000551492.1:c.1857C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1842C>G
  hgvsp: ENST00000356141.4:c.1842C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1752C>G
  hgvsp: ENST00000548645.1:c.1752C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12338
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg614Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-34269355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269355
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269355
    reference: chr 14
allele count: 1
allele frequency: 1.644033801334955e-5
allele num: 60826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1857C>T
  hgvsp: ENST00000551492.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1746C>T
  hgvsp: ENST00000346562.2:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1764C>T
  hgvsp: ENST00000551634.1:c.1764C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1803C>T
  hgvsp: ENST00000357798.5:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1842C>T
  hgvsp: ENST00000356141.4:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1752C>T
  hgvsp: ENST00000548645.1:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg614Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

14-34269357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269357
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269357
    reference: chr 14
allele count: 1
allele frequency: 1.595048968003318e-5
allele num: 62694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1805G>A
  hgvsp: ENSP00000350446.5:p.Arg602Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1754G>A
  hgvsp: ENSP00000448916.1:p.Arg585Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1859G>A
  hgvsp: ENSP00000450392.1:p.Arg620Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1748G>A
  hgvsp: ENSP00000319610.5:p.Arg583Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1766G>A
  hgvsp: ENSP00000448373.1:p.Arg589Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1844G>A
  hgvsp: ENSP00000348460.4:p.Arg615Gln
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg615Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

14-34269370-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269370
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269370
    reference: chr 14
allele count: 190
allele frequency: 2.659351118327128e-3
allele num: 71446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1779C>G
  hgvsp: ENSP00000448373.1:p.Ser593Arg
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1857C>G
  hgvsp: ENSP00000348460.4:p.Ser619Arg
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1767C>G
  hgvsp: ENSP00000448916.1:p.Ser589Arg
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1761C>G
  hgvsp: ENSP00000319610.5:p.Ser587Arg
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1872C>G
  hgvsp: ENSP00000450392.1:p.Ser624Arg
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1818C>G
  hgvsp: ENSP00000350446.5:p.Ser606Arg
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 1.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19486
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 18876
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23449
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20825
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ser619Arg
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-34269370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269370
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269370
    reference: chr 14
allele count: 1
allele frequency: 1.399658483330067e-5
allele num: 71446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1779C>T
  hgvsp: ENST00000551634.1:c.1779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1767C>T
  hgvsp: ENST00000548645.1:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1857C>T
  hgvsp: ENST00000356141.4:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1872C>T
  hgvsp: ENST00000551492.1:c.1872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1818C>T
  hgvsp: ENST00000357798.5:c.1818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1761C>T
  hgvsp: ENST00000346562.2:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser619Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

14-34269371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269371
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269371
    reference: chr 14
allele count: 1
allele frequency: 1.373928335898e-5
allele num: 72784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1819G>A
  hgvsp: ENSP00000350446.5:p.Ala607Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1858G>A
  hgvsp: ENSP00000348460.4:p.Ala620Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1762G>A
  hgvsp: ENSP00000319610.5:p.Ala588Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1873G>A
  hgvsp: ENSP00000450392.1:p.Ala625Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1768G>A
  hgvsp: ENSP00000448916.1:p.Ala590Thr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1780G>A
  hgvsp: ENSP00000448373.1:p.Ala594Thr
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala620Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

14-34269373-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269373
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269373
    reference: chr 14
allele count: 1
allele frequency: 1.32844465699559e-5
allele num: 75276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1875G>C
  hgvsp: ENST00000551492.1:c.1875G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1860G>C
  hgvsp: ENST00000356141.4:c.1860G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1764G>C
  hgvsp: ENST00000346562.2:c.1764G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1782G>C
  hgvsp: ENST00000551634.1:c.1782G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1770G>C
  hgvsp: ENST00000548645.1:c.1770G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1821G>C
  hgvsp: ENST00000357798.5:c.1821G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala620Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS

14-34269389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269389
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269389
    reference: chr 14
allele count: 1
allele frequency: 1.077911438796188e-5
allele num: 92772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1780C>T
  hgvsp: ENST00000346562.2:c.1780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1786C>T
  hgvsp: ENST00000548645.1:c.1786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1891C>T
  hgvsp: ENST00000551492.1:c.1891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1837C>T
  hgvsp: ENST00000357798.5:c.1837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1876C>T
  hgvsp: ENST00000356141.4:c.1876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1798C>T
  hgvsp: ENST00000551634.1:c.1798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29999
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu626Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/14-34269396-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269396
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269396
    reference: chr 14
allele count: 1
allele frequency: 1.01559961000975e-5
allele num: 98464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1898C>A
  hgvsp: ENSP00000450392.1:p.Ala633Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1805C>A
  hgvsp: ENSP00000448373.1:p.Ala602Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1844C>A
  hgvsp: ENSP00000350446.5:p.Ala615Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1787C>A
  hgvsp: ENSP00000319610.5:p.Ala596Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1793C>A
  hgvsp: ENSP00000448916.1:p.Ala598Glu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1883C>A
  hgvsp: ENSP00000348460.4:p.Ala628Glu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala628Glu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

14-34269397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269397
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269397
    reference: chr 14
allele count: 2
allele frequency: 2.009929049504552e-5
allele num: 99506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1794G>A
  hgvsp: ENST00000548645.1:c.1794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1845G>A
  hgvsp: ENST00000357798.5:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1884G>A
  hgvsp: ENST00000356141.4:c.1884G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1806G>A
  hgvsp: ENST00000551634.1:c.1806G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1899G>A
  hgvsp: ENST00000551492.1:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1788G>A
  hgvsp: ENST00000346562.2:c.1788G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala628Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

14-34269415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269415
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269415
    reference: chr 14
allele count: 1
allele frequency: 9.315323707498835e-6
allele num: 107350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1806G>A
  hgvsp: ENST00000346562.2:c.1806G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1824G>A
  hgvsp: ENST00000551634.1:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1863G>A
  hgvsp: ENST00000357798.5:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1902G>A
  hgvsp: ENST00000356141.4:c.1902G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1917G>A
  hgvsp: ENST00000551492.1:c.1917G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1812G>A
  hgvsp: ENST00000548645.1:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro634Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

14-34269417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269417
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269417
    reference: chr 14
allele count: 1
allele frequency: 9.228838273838089e-6
allele num: 108356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1826G>A
  hgvsp: ENSP00000448373.1:p.Arg609Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1814G>A
  hgvsp: ENSP00000448916.1:p.Arg605Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1865G>A
  hgvsp: ENSP00000350446.5:p.Arg622Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1904G>A
  hgvsp: ENSP00000348460.4:p.Arg635Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1808G>A
  hgvsp: ENSP00000319610.5:p.Arg603Gln
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1919G>A
  hgvsp: ENSP00000450392.1:p.Arg640Gln
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg635Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

14-34269421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269421
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269421
    reference: chr 14
allele count: 1
allele frequency: 9.0561663436634e-6
allele num: 110422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1923G>A
  hgvsp: ENST00000551492.1:c.1923G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1812G>A
  hgvsp: ENST00000346562.2:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1869G>A
  hgvsp: ENST00000357798.5:c.1869G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1830G>A
  hgvsp: ENST00000551634.1:c.1830G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1818G>A
  hgvsp: ENST00000548645.1:c.1818G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1908G>A
  hgvsp: ENST00000356141.4:c.1908G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu636Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-34269426-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269426
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269426
    reference: chr 14
allele count: 1
allele frequency: 8.912655971479501e-6
allele num: 112200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1928C>A
  hgvsp: ENSP00000450392.1:p.Ser643Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1835C>A
  hgvsp: ENSP00000448373.1:p.Ser612Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1823C>A
  hgvsp: ENSP00000448916.1:p.Ser608Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1913C>A
  hgvsp: ENSP00000348460.4:p.Ser638Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1817C>A
  hgvsp: ENSP00000319610.5:p.Ser606Tyr
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1874C>A
  hgvsp: ENSP00000350446.5:p.Ser625Tyr
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser638Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

14-34269432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269432
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269432
    reference: chr 14
allele count: 2
allele frequency: 1.759788825340959e-5
allele num: 113650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1841C>T
  hgvsp: ENSP00000448373.1:p.Pro614Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1934C>T
  hgvsp: ENSP00000450392.1:p.Pro645Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1919C>T
  hgvsp: ENSP00000348460.4:p.Pro640Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1829C>T
  hgvsp: ENSP00000448916.1:p.Pro610Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1880C>T
  hgvsp: ENSP00000350446.5:p.Pro627Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1823C>T
  hgvsp: ENSP00000319610.5:p.Pro608Leu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro640Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

14-34269433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269433
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269433
    reference: chr 14
allele count: 12
allele frequency: 1.053703768747146e-4
allele num: 113884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1824C>T
  hgvsp: ENST00000346562.2:c.1824C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1842C>T
  hgvsp: ENST00000551634.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1830C>T
  hgvsp: ENST00000548645.1:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1935C>T
  hgvsp: ENST00000551492.1:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1881C>T
  hgvsp: ENST00000357798.5:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1920C>T
  hgvsp: ENST00000356141.4:c.1920C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro640Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

14-34269435-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269435
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269435
    reference: chr 14
allele count: 4
allele frequency: 3.496442369888639e-5
allele num: 114402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1937A>G
  hgvsp: ENSP00000450392.1:p.Asn646Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1832A>G
  hgvsp: ENSP00000448916.1:p.Asn611Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1922A>G
  hgvsp: ENSP00000348460.4:p.Asn641Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1844A>G
  hgvsp: ENSP00000448373.1:p.Asn615Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1883A>G
  hgvsp: ENSP00000350446.5:p.Asn628Ser
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1826A>G
  hgvsp: ENSP00000319610.5:p.Asn609Ser
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn641Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum

14-34269444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269444
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269444
    reference: chr 14
allele count: 1
allele frequency: 8.624109560687859e-6
allele num: 115954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1892C>T
  hgvsp: ENSP00000350446.5:p.Ser631Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1841C>T
  hgvsp: ENSP00000448916.1:p.Ser614Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1835C>T
  hgvsp: ENSP00000319610.5:p.Ser612Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1946C>T
  hgvsp: ENSP00000450392.1:p.Ser649Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1853C>T
  hgvsp: ENSP00000448373.1:p.Ser618Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1931C>T
  hgvsp: ENSP00000348460.4:p.Ser644Leu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser644Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

14-34269445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269445
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269445
    reference: chr 14
allele count: 1
allele frequency: 8.608370779746225e-6
allele num: 116166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1836G>A
  hgvsp: ENST00000346562.2:c.1836G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1947G>A
  hgvsp: ENST00000551492.1:c.1947G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1932G>A
  hgvsp: ENST00000356141.4:c.1932G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1842G>A
  hgvsp: ENST00000548645.1:c.1842G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1893G>A
  hgvsp: ENST00000357798.5:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1854G>A
  hgvsp: ENST00000551634.1:c.1854G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser644Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

14-34269446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269446
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269446
    reference: chr 14
allele count: 2
allele frequency: 1.719069639511097e-5
allele num: 116342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1837G>A
  hgvsp: ENSP00000319610.5:p.Val613Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1948G>A
  hgvsp: ENSP00000450392.1:p.Val650Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1843G>A
  hgvsp: ENSP00000448916.1:p.Val615Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1855G>A
  hgvsp: ENSP00000448373.1:p.Val619Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1894G>A
  hgvsp: ENSP00000350446.5:p.Val632Met
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1933G>A
  hgvsp: ENSP00000348460.4:p.Val645Met
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val645Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

14-34269454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269454
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269454
    reference: chr 14
allele count: 2
allele frequency: 1.707300416581302e-5
allele num: 117144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1902G>A
  hgvsp: ENST00000357798.5:c.1902G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1851G>A
  hgvsp: ENST00000548645.1:c.1851G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1845G>A
  hgvsp: ENST00000346562.2:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1956G>A
  hgvsp: ENST00000551492.1:c.1956G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1941G>A
  hgvsp: ENST00000356141.4:c.1941G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1863G>A
  hgvsp: ENST00000551634.1:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys647Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS

14-34269461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269461
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269461
    reference: chr 14
allele count: 2
allele frequency: 1.699610789129289e-5
allele num: 117674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1858A>G
  hgvsp: ENSP00000448916.1:p.Thr620Ala
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1909A>G
  hgvsp: ENSP00000350446.5:p.Thr637Ala
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1870A>G
  hgvsp: ENSP00000448373.1:p.Thr624Ala
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1963A>G
  hgvsp: ENSP00000450392.1:p.Thr655Ala
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1948A>G
  hgvsp: ENSP00000348460.4:p.Thr650Ala
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1852A>G
  hgvsp: ENSP00000319610.5:p.Thr618Ala
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr650Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

14-34269463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269463
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269463
    reference: chr 14
allele count: 1
allele frequency: 8.489252606200551e-6
allele num: 117796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1965G>A
  hgvsp: ENST00000551492.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1860G>A
  hgvsp: ENST00000548645.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1950G>A
  hgvsp: ENST00000356141.4:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1854G>A
  hgvsp: ENST00000346562.2:c.1854G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1872G>A
  hgvsp: ENST00000551634.1:c.1872G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1911G>A
  hgvsp: ENST00000357798.5:c.1911G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr650Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

14-34269467-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269467
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269467
    reference: chr 14
allele count: 1
allele frequency: 8.475869200386499e-6
allele num: 117982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1915A>T
  hgvsp: ENSP00000350446.5:p.Ile639Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1954A>T
  hgvsp: ENSP00000348460.4:p.Ile652Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1969A>T
  hgvsp: ENSP00000450392.1:p.Ile657Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1858A>T
  hgvsp: ENSP00000319610.5:p.Ile620Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1864A>T
  hgvsp: ENSP00000448916.1:p.Ile622Phe
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1876A>T
  hgvsp: ENSP00000448373.1:p.Ile626Phe
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile652Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

14-34269473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269473
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269473
    reference: chr 14
allele count: 1
allele frequency: 8.460236886632826e-6
allele num: 118200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1870G>A
  hgvsp: ENSP00000448916.1:p.Glu624Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1975G>A
  hgvsp: ENSP00000450392.1:p.Glu659Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1960G>A
  hgvsp: ENSP00000348460.4:p.Glu654Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1882G>A
  hgvsp: ENSP00000448373.1:p.Glu628Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1921G>A
  hgvsp: ENSP00000350446.5:p.Glu641Lys
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1864G>A
  hgvsp: ENSP00000319610.5:p.Glu622Lys
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu654Lys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-34269487-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34269487
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 34269487
    reference: chr 14
allele count: 35
allele frequency: 2.952290977798772e-4
allele num: 118552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000319610
  ensembl transcript: ENST00000346562
  gene symbol: NPAS3
  hgvsc: ENST00000346562.2:c.1878C>G
  hgvsp: ENSP00000319610.5:p.Phe626Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448916
  ensembl transcript: ENST00000548645
  gene symbol: NPAS3
  hgvsc: ENST00000548645.1:c.1884C>G
  hgvsp: ENSP00000448916.1:p.Phe628Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000448373
  ensembl transcript: ENST00000551634
  gene symbol: NPAS3
  hgvsc: ENST00000551634.1:c.1896C>G
  hgvsp: ENSP00000448373.1:p.Phe632Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000450392
  ensembl transcript: ENST00000551492
  gene symbol: NPAS3
  hgvsc: ENST00000551492.1:c.1989C>G
  hgvsp: ENSP00000450392.1:p.Phe663Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000348460
  ensembl transcript: ENST00000356141
  gene symbol: NPAS3
  hgvsc: ENST00000356141.4:c.1974C>G
  hgvsp: ENSP00000348460.4:p.Phe658Leu
  variant of: http://identifiers.org/hgnc/19311
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151322
  ensembl protein: ENSP00000350446
  ensembl transcript: ENST00000357798
  gene symbol: NPAS3
  hgvsc: ENST00000357798.5:c.1935C>G
  hgvsp: ENSP00000350446.5:p.Phe645Leu
  variant of: http://identifiers.org/hgnc/19311
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
hgvs: p.Phe658Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.371354043158644e-4
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.175e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

FS
type: SiteQuality
SIO_000300: 1.797e0

DP
type: SiteQuality
SIO_000300: 1.40895e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 656
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565043195192187e-5
allele num: 63896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

DP
type: SiteQuality
SIO_000300: 1.400042e6

FS
type: SiteQuality
SIO_000300: 3.0e0

QD
type: SiteQuality
SIO_000300: 1.083e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 702
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45165
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.044932079414838e-4
allele num: 9570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.385027e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.851e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.57e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e-1

GenotypeQuality
all individuals: 509
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.895401718039414e-5
allele num: 63328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.379742e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.334e0

QD
type: SiteQuality
SIO_000300: 2.343e1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 828
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44922
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57952930026852e-5
allele num: 63310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.379076e6

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 341
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57952930026852e-5
allele num: 63310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.379076e6

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

FS
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

GenotypeQuality
all individuals: 593
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40954
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618280091918309e-5
allele num: 61794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.402e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: -4.373e0

DP
type: SiteQuality
SIO_000300: 1.333112e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.558e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.525e-1

QD
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
all individuals: 41415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618804027584421e-5
allele num: 61774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.509e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

QD
type: SiteQuality
SIO_000300: 2.284e1

VQSLOD
type: SiteQuality
SIO_000300: -6.956e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

FS
type: SiteQuality
SIO_000300: 2.592e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.332931e6

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.459113809585325e-5
allele num: 15482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.229842e6

QD
type: SiteQuality
SIO_000300: 1.729e1

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.065e-1

FS
type: SiteQuality
SIO_000300: 7.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.72e-1

GenotypeQuality
all individuals: 196
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12059
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.939738781844045e-4
allele num: 15466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.228333e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.835e0

QD
type: SiteQuality
SIO_000300: 1.122e1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56616
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.314405888538381e-4
allele num: 15216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4754
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.162943e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 1.349e1

VQSLOD
type: SiteQuality
SIO_000300: -1.456e0

FS
type: SiteQuality
SIO_000300: 2.856e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.678e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 951
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.613756613756614e-5
allele num: 15120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.13644e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
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variant carriers: 0

GenotypeQuality
all individuals: 987
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variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.806880601329864e-5
allele num: 55344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

VQSLOD
type: SiteQuality
SIO_000300: -1.106e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.128378e6

GenotypeQuality
all individuals: 327
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
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variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.708707902857909e-5
allele num: 14906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

DP
type: SiteQuality
SIO_000300: 1.084756e6

QD
type: SiteQuality
SIO_000300: 1.72e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.411e0

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
all individuals: 137
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
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GenotypeQuality
all individuals: 1240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.636435539151068e-4
allele num: 7586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

DP
type: SiteQuality
SIO_000300: 1.071298e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 7.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.318217769575534e-4
allele num: 7586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14834
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

DP
type: SiteQuality
SIO_000300: 1.071298e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

QD
type: SiteQuality
SIO_000300: 7.63e0

GenotypeQuality
all individuals: 20576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
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GenotypeQuality
all individuals: 2594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.340842048806651e-4
allele num: 7458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 1.050385e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.888e0

GenotypeQuality
all individuals: 159
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
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variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.202212070209185e-4
allele num: 8318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.033386e6

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 1.613e0

QD
type: SiteQuality
SIO_000300: 1.099e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 323
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20490
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.888950124001103e-5
allele num: 14516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.98968e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.52e0

GenotypeQuality
all individuals: 3559
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.309e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.583e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

DP
type: SiteQuality
SIO_000300: 9.62914e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46368
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.830055186076129e-4
allele num: 14134
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

FS
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 9.15833e5

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 124
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.26295541977823e-5
allele num: 44190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 8.78125e5

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

FS
type: SiteQuality
SIO_000300: 6.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.889e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 10240
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.836057645807138e-5
allele num: 41356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.30959e5

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1446
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10950
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GenotypeQuality
all individuals: 46
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.416626389560174e-5
allele num: 41380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.29257e5

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

GenotypeQuality
all individuals: 725
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4001
bin: 3.25e1
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GenotypeQuality
all individuals: 81
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 10950
bin: 6.25e1
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GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.332453438920662e-5
allele num: 13638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 4.94e0

DP
type: SiteQuality
SIO_000300: 8.29257e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 10
allele frequency: 1.794687724335965e-3
allele num: 5572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 8.11822e5

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

QD
type: SiteQuality
SIO_000300: 1.244e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1421
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39662
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.92975685063682e-4
allele num: 5182
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 8.04751e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

FS
type: SiteQuality
SIO_000300: 3.792e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 360
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.707650273224044e-4
allele num: 5856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.792e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

DP
type: SiteQuality
SIO_000300: 8.04751e5

GenotypeQuality
all individuals: 439
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4126
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38990
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.769285208775655e-4
allele num: 5652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.493205913095416e-4
allele num: 13394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3144
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.93228e5

VQSLOD
type: SiteQuality
SIO_000300: -2.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.146e1

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

FS
type: SiteQuality
SIO_000300: 1.5342e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

GenotypeQuality
all individuals: 460
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 9.912767644726407e-4
allele num: 5044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.68017e5

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.316e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.0668e1

GenotypeQuality
all individuals: 600
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10522
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.04228780042592e-5
allele num: 32870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.07558e5

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

QD
type: SiteQuality
SIO_000300: 1.094e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 1890
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.326663564448581e-4
allele num: 4298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 7.05588e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.72e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 2114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.539360081259522e-4
allele num: 3938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.7602e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

QD
type: SiteQuality
SIO_000300: 6.47e0

VQSLOD
type: SiteQuality
SIO_000300: -9.748e-1

FS
type: SiteQuality
SIO_000300: 1.527e0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.222e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 77
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 526
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 6.72953e5

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 3019
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 3.010234798314269e-4
allele num: 3322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 6.70332e5

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.378e0

GenotypeQuality
all individuals: 1457
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13505
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.561475409836066e-4
allele num: 3904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

MQ
type: SiteQuality
SIO_000300: 5.812e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.73017e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

QD
type: SiteQuality
SIO_000300: 1.586e1

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.608024245922932e-5
allele num: 27716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.16e0

DP
type: SiteQuality
SIO_000300: 6.78676e5

VQSLOD
type: SiteQuality
SIO_000300: -1.391e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-2

FS
type: SiteQuality
SIO_000300: 8.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.608024245922932e-5
allele num: 27716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.391e0

DP
type: SiteQuality
SIO_000300: 6.78676e5

FS
type: SiteQuality
SIO_000300: 8.443e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 8.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10786
bin: 6.25e1
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GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27630
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.561475409836066e-4
allele num: 3904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12228
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.437e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 1.984e0

MQ
type: SiteQuality
SIO_000300: 5.643e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 6.83353e5

QD
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
all individuals: 1443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15044
bin: 2.25e1
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GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

QD
type: SiteQuality
SIO_000300: 4.69e0

VQSLOD
type: SiteQuality
SIO_000300: -1.214e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.8843e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15034
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.581148832545481e-5
allele num: 27924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.174e1

FS
type: SiteQuality
SIO_000300: 3.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 6.90618e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 1550
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.48015873015873e-4
allele num: 4032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.28e-2

QD
type: SiteQuality
SIO_000300: 1.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

MQRankSum
type: SiteQuality
SIO_000300: -8.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.69e-1

DP
type: SiteQuality
SIO_000300: 7.12057e5

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11009
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 50
bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 421
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12374
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.76243093922652e-4
allele num: 3620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.434773648416569e-5
allele num: 29114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

DP
type: SiteQuality
SIO_000300: 7.24697e5

VQSLOD
type: SiteQuality
SIO_000300: -1.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

FS
type: SiteQuality
SIO_000300: 4.655e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 6.44e0

GenotypeQuality
all individuals: 1657
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.471e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: -1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

DP
type: SiteQuality
SIO_000300: 7.43842e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 371
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.623294858342078e-4
allele num: 3812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

DP
type: SiteQuality
SIO_000300: 7.54079e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.236e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.1855249745158e-5
allele num: 31392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 9.622e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.77661e5

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.16035648821187e-5
allele num: 31642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.246e0

VQSLOD
type: SiteQuality
SIO_000300: -8.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.89538e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.121098626716604e-5
allele num: 32040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.678e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.98634e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.121098626716604e-5
allele num: 32040
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.98634e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.315e0

VQSLOD
type: SiteQuality
SIO_000300: -1.162e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.678e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.01659125188537e-5
allele num: 33150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.24937e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

QD
type: SiteQuality
SIO_000300: 8.56e0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 183

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 562
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.253204454717378e-5
allele num: 38072
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 8.56898029134533e-4
allele num: 4668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 184
allele frequency: 3.112313937753721e-2
allele num: 5912
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.37672e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

GenotypeQuality
all individuals: 383
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2272
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GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.626602227358689e-5
allele num: 38072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.37672e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.531e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 20504
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4748
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.634521085322001e-4
allele num: 6118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 6.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.48679e5

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
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variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 54
bin: 9.25e1
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GenotypeQuality
all individuals: 2499
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GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.479912707072711e-5
allele num: 40324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

DP
type: SiteQuality
SIO_000300: 9.75482e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.791632708503124e-5
allele num: 14724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4836
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.145896e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 2.831e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.848e1

MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.455180442374854e-4
allele num: 6872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.616e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.200671e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3759
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15148
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.016942315449778e-4
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.035e0

QD
type: SiteQuality
SIO_000300: 2.23e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5865
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
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South Asian
type: Population
allele count: 1
allele frequency: 6.386511687316388e-5
allele num: 15658
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.24e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

FS
type: SiteQuality
SIO_000300: 6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

DP
type: SiteQuality
SIO_000300: 1.294976e6

GenotypeQuality
all individuals: 635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
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GenotypeQuality
all individuals: 4349
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GenotypeQuality
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GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 735
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.696755802904846e-5
allele num: 58936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

FS
type: SiteQuality
SIO_000300: 1.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 1.306544e6

GenotypeQuality
all individuals: 342
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4822
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663727414900343e-5
allele num: 60106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.330009e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.353e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.571e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.266449429753102e-5
allele num: 15958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.350878e6

FS
type: SiteQuality
SIO_000300: 1.029e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.055e0

QD
type: SiteQuality
SIO_000300: 1.649e1

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.226014581585909e-5
allele num: 61996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.37081e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

FS
type: SiteQuality
SIO_000300: 1.646e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

GenotypeQuality
all individuals: 363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4798
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.218323586744639e-3
allele num: 8208
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.790510295434199e-4
allele num: 11170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.581e0

FS
type: SiteQuality
SIO_000300: 3.806e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.374819e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
all individuals: 222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.602410024677114e-5
allele num: 62406
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.645200486026732e-4
allele num: 8230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.379754e6

FS
type: SiteQuality
SIO_000300: 1.5246e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.088e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

GenotypeQuality
all individuals: 810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05797714769361e-4
allele num: 9452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.372e-1

FS
type: SiteQuality
SIO_000300: 2.634e0

QD
type: SiteQuality
SIO_000300: 6.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.986e0

DP
type: SiteQuality
SIO_000300: 1.400798e6

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576342255430499e-5
allele num: 63438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.403477e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

GenotypeQuality
all individuals: 814
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 50357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.14821810855056e-5
allele num: 63528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

FS
type: SiteQuality
SIO_000300: 1.854e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQ
type: SiteQuality
SIO_000300: 5.89e1

VQSLOD
type: SiteQuality
SIO_000300: -2.237e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.405402e6

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
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GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 836
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226391954868776e-4
allele num: 16308
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

VQSLOD
type: SiteQuality
SIO_000300: -1.518e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.548e0

DP
type: SiteQuality
SIO_000300: 1.415846e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 1.357e0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 305
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GenotypeQuality
all individuals: 77
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variant carriers: 2

GenotypeQuality
all individuals: 5198
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GenotypeQuality
all individuals: 840
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.25e1
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GenotypeQuality
all individuals: 52
bin: 5.25e1
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.112452924149522e-5
allele num: 64258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.748e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 1.421669e6

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.075e0

FS
type: SiteQuality
SIO_000300: 1.081e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -1.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.621e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

QD
type: SiteQuality
SIO_000300: 1.54e1

DP
type: SiteQuality
SIO_000300: 1.423694e6

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551782998665467e-5
allele num: 64442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

FS
type: SiteQuality
SIO_000300: 1.616e0

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.94e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.244e0

DP
type: SiteQuality
SIO_000300: 1.425603e6

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5485149741398e-5
allele num: 64578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -1.253e-1

FS
type: SiteQuality
SIO_000300: 6.507e0

DP
type: SiteQuality
SIO_000300: 1.427983e6

QD
type: SiteQuality
SIO_000300: 1.665e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.824e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0