16-4850595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850595
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850595
    reference: chr 16
allele count: 1
allele frequency: 4.386349679796474e-5
allele num: 22798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1569C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1788C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-16C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-16C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-4850605-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850605
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850605
    reference: chr 16
allele count: 1
allele frequency: 4.785604900459418e-5
allele num: 20896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1559C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1778C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-26C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-26C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-4850605-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850605
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850605
    reference: chr 16
allele count: 1
allele frequency: 4.785604900459418e-5
allele num: 20896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1559C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-26C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1778C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-26C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-4850611-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850611
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850611
    reference: chr 16
allele count: 14
allele frequency: 7.851934941110488e-4
allele num: 17830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1772A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1553A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-32A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-32A>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30954
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

16-4850611-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850611
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850612
    reference: chr 16
allele count: 5
allele frequency: 2.804262478968031e-4
allele num: 17830
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1771dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1552dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-33dupC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-33dupC
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 1.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

16-4850612-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850612
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850612
    reference: chr 16
allele count: 1
allele frequency: 4.793863854266539e-5
allele num: 20860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1771C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-33C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1552C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-33C>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

16-4850616-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850616
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850616
    reference: chr 16
allele count: 9
allele frequency: 4.416961130742049e-4
allele num: 20376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1548C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-37C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1767C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32098
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

16-4850618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850618
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850618
    reference: chr 16
allele count: 1
allele frequency: 5.84932147870847e-5
allele num: 17096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1765C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1546C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-39C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-39C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

16-4850618-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850618
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850619
    reference: chr 16
allele count: 24
allele frequency: 1.403837154890033e-3
allele num: 17096
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1545dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1764dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-40dupG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-40dupG
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-4850620-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850620
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850620
    reference: chr 16
allele count: 118
allele frequency: 9.294265910523e-3
allele num: 12696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1544T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-41T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1763T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-41T>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 30294
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 8
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

16-4850621-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850621
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850621
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 20110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1762G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1543G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-42G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-42G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

16-4850623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850623
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850623
    reference: chr 16
allele count: 46
allele frequency: 2.900012608750473e-3
allele num: 15862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1760A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1541A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-44A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-44A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 6.25e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

16-4850625-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850625
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850623
    reference: chr 16
allele count: 1
allele frequency: 5.072537283149031e-5
allele num: 19714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1756_117+1757delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-48_36-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-48_201-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-48_256-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-48_213-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-48_256-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-48_388-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-48_184-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1537_1538delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-48_355-47delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-48_*113-47delCA
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 32744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: CTG
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-4850627-G-GCCCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850627
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850632
    reference: chr 16
allele count: 1
allele frequency: 5.422993492407809e-5
allele num: 18440
alternate allele: GCCCCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-49_213-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-49_256-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1536_1537insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-49_36-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-49_256-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-49_184-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-49_201-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-49_388-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1755_117+1756insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-49_355-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-49_*113-48insGGGGG
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/16-4850630-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4850630
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4850630
    reference: chr 16
allele count: 11
allele frequency: 6.363531181302789e-4
allele num: 17286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.256-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.355-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.184-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.36-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.201-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.388-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1534T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.213-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.256-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*113-51T>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1753T>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

16-4851120-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851120
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851120
    reference: chr 16
allele count: 11
allele frequency: 3.793103448275862e-3
allele num: 2900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+148C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+148C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+384C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+148C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1044C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+148C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+148C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*43C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+384C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.893C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1263C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+148C>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41095
  bin: 2.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 7.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

16-4851121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851121
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851121
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 2908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+147C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+147C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1043C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+383C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+147C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+383C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1262C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.892C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+147C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+147C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+147C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41180
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

16-4851121-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851121
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851121
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 2908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+147C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1262C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+147C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+383C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+147C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.892C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*42C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+147C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1043C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+147C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+147C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+383C>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4851126-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851126
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851126
    reference: chr 16
allele count: 25
allele frequency: 8.389261744966443e-3
allele num: 2980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1038A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+142A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*37A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+378A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+142A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1257A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.887A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+142A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+142A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+142A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+378A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+142A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41127
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 7.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

16-4851130-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851130
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851130
    reference: chr 16
allele count: 4
allele frequency: 1.284521515735388e-3
allele num: 3114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1034T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+138T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+374T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.883T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+138T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+138T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+138T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+374T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*33T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+138T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1253T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+138T>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10365
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-4851132-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851132
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851132
    reference: chr 16
allele count: 1
allele frequency: 3.156565656565657e-4
allele num: 3168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*31A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+136A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+136A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+136A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1032A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+372A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1251A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.881A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+372A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+136A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+136A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+136A>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

16-4851148-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851148
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851146
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 4088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.863_864delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+118_255+119delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+118_183+119delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1233_117+1234delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+118_212+119delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+354_354+355delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+118_255+119delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+354_200+355delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*13_*14delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+118_35+119delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+118_387+119delCA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1014_1015delCA
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17374
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: CTG
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

16-4851152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851152
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851152
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 4634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+116C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+352C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+352C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.861C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+116C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+116C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1231C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+116C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+116C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+116C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1012C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

16-4851157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851157
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851157
    reference: chr 16
allele count: 23
allele frequency: 4.035087719298246e-3
allele num: 5700
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+111C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+347C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1226C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+111C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.856C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+111C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1007C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+347C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+111C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+111C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+111C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31225
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23607
  bin: 7.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

16-4851157-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851157
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851157
    reference: chr 16
allele count: 1
allele frequency: 1.754385964912281e-4
allele num: 5700
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.856C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1226C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+111C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+347C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+111C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1007C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+111C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+347C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+111C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+111C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+111C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

16-4851166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851166
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851166
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 7928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.998T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.847T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+102T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+102T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+338T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+102T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+338T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+102T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+102T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+102T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.357T>C
  hgvsp: ENST00000588201.1:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1217T>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29303
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro119Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4851174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851174
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851174
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 11584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+94C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+330C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+330C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.839C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+94C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+94C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.990C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+94C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+94C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.349C>T
  hgvsp: ENSP00000466529.1:p.Arg117Trp
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1209C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+94C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33512
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg117Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

16-4851175-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851175
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851175
    reference: chr 16
allele count: 1
allele frequency: 8.077544426494346e-5
allele num: 12380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+93G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.348G>C
  hgvsp: ENST00000588201.1:c.348G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.838G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+93G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+329G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+93G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+93G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.989G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+93G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1208G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+329G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+93G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly116Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/16-4851176-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851176
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851174
    reference: chr 16
allele count: 1
allele frequency: 7.68521364893944e-5
allele num: 13012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.986_987delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+90_255+91delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+326_354+327delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1205_117+1206delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+90_183+91delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+90_212+91delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+90_387+91delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.345_346delTG
  hgvsp: ENSP00000466529.1:p.Gly116AlafsTer16
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.835_836delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+90_35+91delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+90_255+91delTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+326_200+327delTG
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly116AlafsTer16
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: CCA
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4851179-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851179
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851179
    reference: chr 16
allele count: 2
allele frequency: 1.353179972936401e-4
allele num: 14780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+325C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1204C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+89C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+89C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+89C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+89C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.344C>T
  hgvsp: ENSP00000466529.1:p.Ser115Phe
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.985C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+325C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+89C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.834C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+89C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser115Phe
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-4851179-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851179
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851179
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 14780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.985C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+89C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+325C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1204C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+89C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+89C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.344C>G
  hgvsp: ENSP00000466529.1:p.Ser115Cys
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+89C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.834C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+89C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+325C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+89C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser115Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-4851181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851181
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851181
    reference: chr 16
allele count: 2
allele frequency: 1.262466860244918e-4
allele num: 15842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+323C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+87C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1202C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.832C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.342C>T
  hgvsp: ENST00000588201.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.983C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+87C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+87C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+87C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+323C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+87C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+87C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36799
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp114Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-4851184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851184
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851184
    reference: chr 16
allele count: 2
allele frequency: 1.077470100204719e-4
allele num: 18562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+320C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+84C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+84C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+84C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.339C>T
  hgvsp: ENST00000588201.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.980C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+320C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+84C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+84C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1199C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.829C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+84C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys113Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/16-4851185-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851185
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851185
    reference: chr 16
allele count: 1
allele frequency: 4.969684921975947e-5
allele num: 20122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.979G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+319G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.828G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+319G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+83G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+83G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+83G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+83G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.338G>T
  hgvsp: ENSP00000466529.1:p.Cys113Phe
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+83G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1198G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+83G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys113Phe
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-4851187-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851187
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851187
    reference: chr 16
allele count: 3
allele frequency: 1.324971292288667e-4
allele num: 22642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+81C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+81C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+81C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+81C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+317C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.977C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.826C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+81C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+317C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.336C>G
  hgvsp: ENST00000588201.1:c.336C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+81C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1196C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37983
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro112Pro
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

16-4851188-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851188
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851188
    reference: chr 16
allele count: 6
allele frequency: 2.54000508001016e-4
allele num: 23622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+316C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.976C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+80C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.335C>G
  hgvsp: ENSP00000466529.1:p.Pro112Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+80C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1195C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+80C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+316C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+80C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+80C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.825C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+80C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38148
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro112Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

16-4851189-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851189
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851189
    reference: chr 16
allele count: 1
allele frequency: 4.056466006814863e-5
allele num: 24652
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+79C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+79C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+79C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+79C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+79C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.975C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+79C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+315C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.334C>G
  hgvsp: ENSP00000466529.1:p.Pro112Ala
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.824C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+315C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1194C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro112Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

16-4851190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851190
    reference: chr 16
allele count: 8
allele frequency: 3.145395926712275e-4
allele num: 25434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.823G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+78G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1193G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+78G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.333G>A
  hgvsp: ENST00000588201.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+78G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.974G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+314G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+78G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+78G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+314G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+78G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38167
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys111Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

16-4851196-CAGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851196
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851192
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 31020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.964_967delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.813_816delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+68_255+71delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1183_117+1186delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+68_35+71delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+68_387+71delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+304_200+307delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.323_326delCTCT
  hgvsp: ENSP00000466529.1:p.Ser108CysfsTer39
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+304_354+307delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+68_212+71delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+68_183+71delCTCT
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+68_255+71delCTCT
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37386
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser108CysfsTer39
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CAGAG
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

16-4851198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851198
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851198
    reference: chr 16
allele count: 3
allele frequency: 8.922198429693076e-5
allele num: 33624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+70C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.815C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.325C>T
  hgvsp: ENST00000588201.1:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+70C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+70C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+70C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.966C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+306C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+70C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+306C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1185C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+70C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu109Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

16-4851198-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851198
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851198
    reference: chr 16
allele count: 1
allele frequency: 2.974066143231026e-5
allele num: 33624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+70C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+70C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.325C>G
  hgvsp: ENSP00000466529.1:p.Leu109Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+306C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+306C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+70C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1185C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+70C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.815C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.966C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+70C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+70C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu109Val
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

16-4851202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851202
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851202
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 38062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.321C>T
  hgvsp: ENST00000588201.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+302C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.811C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+302C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+66C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.962C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+66C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+66C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1181C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+66C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+66C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+66C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35539
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe107Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-4851202-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851202
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851202
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 38062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.321C>G
  hgvsp: ENSP00000466529.1:p.Phe107Leu
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.811C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+66C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+66C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+66C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+66C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.962C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+66C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1181C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+302C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+302C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+66C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35539
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe107Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-4851210-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851210
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851210
    reference: chr 16
allele count: 1
allele frequency: 2.013612017236519e-5
allele num: 49662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1173C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+58C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+294C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.954C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+58C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+58C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+58C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.313C>T
  hgvsp: ENSP00000466529.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+58C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+294C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.803C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+58C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro105Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

16-4851212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851212
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851212
    reference: chr 16
allele count: 1
allele frequency: 1.919680565153959e-5
allele num: 52092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+56C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.952C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+56C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.801C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+56C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+56C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+56C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1171C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+56C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+292C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.311C>T
  hgvsp: ENSP00000466529.1:p.Ala104Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+292C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala104Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

16-4851217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851217
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851217
    reference: chr 16
allele count: 1
allele frequency: 1.633880138553036e-5
allele num: 61204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+51G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.947G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+287G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.796G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.306G>A
  hgvsp: ENSP00000466529.1:p.Met102Ile
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+51G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+51G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+287G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+51G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1166G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+51G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+51G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met102Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

16-4851221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851221
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851221
    reference: chr 16
allele count: 3
allele frequency: 4.416050872906056e-5
allele num: 67934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+47G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.943G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+47G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1162G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+283G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+47G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+283G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+47G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.302G>A
  hgvsp: ENSP00000466529.1:p.Ser101Asn
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.792G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+47G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+47G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24323
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser101Asn
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

16-4851223-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851223
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851223
    reference: chr 16
allele count: 226
allele frequency: 3.186958851566686e-3
allele num: 70914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.941G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+45G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+45G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+45G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+281G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+45G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.790G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.300G>C
  hgvsp: ENSP00000466529.1:p.Lys100Asn
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+281G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+45G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+45G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1160G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22442
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 25627
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys100Asn
num of homozygotes: 2
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-4851223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851223
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851223
    reference: chr 16
allele count: 2
allele frequency: 2.82031756775813e-5
allele num: 70914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+45G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1160G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+281G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+45G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.941G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.790G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+45G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+45G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+45G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.300G>A
  hgvsp: ENST00000588201.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+281G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+45G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys100Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-4851226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851226
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851226
    reference: chr 16
allele count: 1
allele frequency: 1.334614563314115e-5
allele num: 74928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.297G>A
  hgvsp: ENST00000588201.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+42G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+278G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+42G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.938G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.787G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+42G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1157G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+278G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+42G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+42G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+42G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly99Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/16-4851227-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851227
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851227
    reference: chr 16
allele count: 2
allele frequency: 2.621919244887257e-5
allele num: 76280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+277G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+41G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.937G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+41G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.296G>T
  hgvsp: ENSP00000466529.1:p.Gly99Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1156G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+277G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.786G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+41G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+41G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+41G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+41G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly99Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

16-4851231-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851231
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851231
    reference: chr 16
allele count: 1
allele frequency: 1.241280007944192e-5
allele num: 80562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+273A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+37A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1152A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.292A>G
  hgvsp: ENSP00000466529.1:p.Met98Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+37A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+273A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+37A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+37A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.782A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.933A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+37A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29390
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met98Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-4851233-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851233
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851233
    reference: chr 16
allele count: 7
allele frequency: 8.493290300662476e-5
allele num: 82418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.290C>A
  hgvsp: ENSP00000466529.1:p.Pro97Gln
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.780C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+271C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+271C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+35C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+35C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1150C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+35C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+35C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.931C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+35C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+35C>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30132
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro97Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

16-4851240-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851240
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851240
    reference: chr 16
allele count: 1
allele frequency: 1.118092980612268e-5
allele num: 89438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1143A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.773A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+28A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+28A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+28A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+28A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+264A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.924A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+28A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+28A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.283A>C
  hgvsp: ENSP00000466529.1:p.Ile95Leu
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+264A>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile95Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

16-4851243-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851243
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851243
    reference: chr 16
allele count: 1
allele frequency: 1.088636808987786e-5
allele num: 91858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+25C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.770C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.921C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1140C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+25C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.280C>G
  hgvsp: ENSP00000466529.1:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+25C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+25C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+261C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+261C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+25C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+25C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33583
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro94Ala
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

16-4851245-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851245
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851245
    reference: chr 16
allele count: 3
allele frequency: 3.20786997433704e-5
allele num: 93520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+23C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+23C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.278C>G
  hgvsp: ENSP00000466529.1:p.Pro93Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1138C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.919C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.768C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+23C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+259C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+23C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+23C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+23C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+259C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro93Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

16-4851246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851246
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851246
    reference: chr 16
allele count: 84
allele frequency: 8.904530710030318e-4
allele num: 94334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.918C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+22C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+22C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.767C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1137C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+22C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+22C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.277C>T
  hgvsp: ENSP00000466529.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+258C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+22C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+22C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+258C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 34627
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro93Ser
num of homozygotes: 2
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-4851248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851248
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851248
    reference: chr 16
allele count: 4
allele frequency: 4.193399589046841e-5
allele num: 95388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+20C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+256C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+20C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+20C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.275C>T
  hgvsp: ENSP00000466529.1:p.Ser92Phe
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.765C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+256C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1135C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.916C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+20C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+20C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+20C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ser92Phe
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

16-4851257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851257
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851257
    reference: chr 16
allele count: 1
allele frequency: 1.002807862013638e-5
allele num: 99720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.756C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.907C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1126C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.266C>T
  hgvsp: ENSP00000466529.1:p.Pro89Leu
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+11C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+247C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+247C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro89Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

16-4851260-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851260
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851260
    reference: chr 16
allele count: 2
allele frequency: 1.975894092076665e-5
allele num: 101220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+8C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+8C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+8C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+8C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+244C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+8C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+8C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.904C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1123C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.263C>A
  hgvsp: ENSP00000466529.1:p.Pro88His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.753C>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+244C>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro88His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

16-4851261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851261
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851261
    reference: chr 16
allele count: 1
allele frequency: 9.833421834129841e-6
allele num: 101694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+7C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+243C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1122C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+243C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+7C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+7C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+7C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.903C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+7C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+7C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.262C>T
  hgvsp: ENSP00000466529.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.752C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8301
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro88Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

16-4851262-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851262
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851262
    reference: chr 16
allele count: 1
allele frequency: 9.806613580198486e-6
allele num: 101972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.902T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1121T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.261T>A
  hgvsp: ENSP00000466529.1:p.Ser87Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+6T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+6T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.751T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+6T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+242T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+6T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+6T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+242T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+6T>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36961
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser87Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

16-4851264-T-TCAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851264
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851267
    reference: chr 16
allele count: 1
allele frequency: 9.717606359201602e-6
allele num: 102906
alternate allele: TCAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.212+1_212+3dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+237_200+239dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.256_258dupGTG
  hgvsp: ENSP00000466529.1:p.Val86dup
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.255+1_255+3dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+237_354+239dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.35+1_35+3dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.387+1_387+3dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.183+1_183+3dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.255+1_255+3dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.746_748dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.897_899dupGTG
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1116_117+1118dupGTG
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37458
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val86dup
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-4851269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851269
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851269
    reference: chr 16
allele count: 2
allele frequency: 1.901610664232605e-5
allele num: 105174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.386C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.34C>T
  hgvsp: ENSP00000465076.1:p.Ala12Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.254C>T
  hgvsp: ENSP00000466529.1:p.Ala85Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.182C>T
  hgvsp: ENSP00000467509.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+235C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.211C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+235C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.254C>T
  hgvsp: ENSP00000322832.5:p.Ala85Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.895C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.254C>T
  hgvsp: ENSP00000468343.1:p.Ala85Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1114C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.744C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38383
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala85Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

16-4851274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851274
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851274
    reference: chr 16
allele count: 1
allele frequency: 9.331317768695295e-6
allele num: 107166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.739C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.206C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+230C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.249C>T
  hgvsp: ENST00000588201.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.177C>T
  hgvsp: ENST00000591392.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1109C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.890C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.381C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.29C>T
  hgvsp: ENST00000586504.1:c.29C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.249C>T
  hgvsp: ENST00000587377.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+230C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.249C>T
  hgvsp: ENST00000322048.7:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser83Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS

16-4851278-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851278
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851278
    reference: chr 16
allele count: 2
allele frequency: 1.844099802681321e-5
allele num: 108454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.245T>A
  hgvsp: ENSP00000466529.1:p.Leu82His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1105T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.202T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.377T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.25T>A
  hgvsp: ENSP00000465076.1:p.Leu9His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.245T>A
  hgvsp: ENSP00000468343.1:p.Leu82His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.886T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.245T>A
  hgvsp: ENSP00000322832.5:p.Leu82His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+226T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.173T>A
  hgvsp: ENSP00000467509.1:p.Leu58His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+226T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.735T>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu82His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

16-4851280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4851280
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4851280
    reference: chr 16
allele count: 32
allele frequency: 2.938313775182267e-4
allele num: 108906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.243C>T
  hgvsp: ENST00000587377.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.200C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.171C>T
  hgvsp: ENST00000591392.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.117+1103C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.354+224C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.200+224C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.243C>T
  hgvsp: ENST00000322048.7:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585653
  gene symbol: ROGDI
  hgvsc: ENST00000585653.1:n.375C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.884C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.243C>T
  hgvsp: ENST00000588201.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.23C>T
  hgvsp: ENST00000586504.1:c.23C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000585871
  gene symbol: ROGDI
  hgvsc: ENST00000585871.1:n.733C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40034
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9935
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ala81Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31747
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.24750499001996e-4
allele num: 8016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.6e0

DP
type: SiteQuality
SIO_000300: 4.68369e5

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
all individuals: 268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29528
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.785011355034065e-4
allele num: 2642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.409e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.067e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

DP
type: SiteQuality
SIO_000300: 4.32051e5

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29528
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.136752136752137e-3
allele num: 468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.74e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.067e-1

FS
type: SiteQuality
SIO_000300: 7.409e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.32051e5

GenotypeQuality
all individuals: 799
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9877
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 943
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 3.804347826086957e-3
allele num: 1840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.813953488372093e-4
allele num: 6880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.461988304093567e-3
allele num: 684
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.573340195573855e-4
allele num: 7772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 4.31257e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.03e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2391
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9877
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 799
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.267441860465116e-4
allele num: 6880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 4.31257e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.03e-2

QD
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
all individuals: 4485
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31297
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.264222503160556e-4
allele num: 7910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

DP
type: SiteQuality
SIO_000300: 4.32022e5

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 2.184e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30742
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.136076748295885e-3
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

DP
type: SiteQuality
SIO_000300: 4.21972e5

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.38e-2

FS
type: SiteQuality
SIO_000300: 2.185e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.05e1

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552795031055901e-4
allele num: 6440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e1

QD
type: SiteQuality
SIO_000300: 8.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.997e0

DP
type: SiteQuality
SIO_000300: 4.05117e5

FS
type: SiteQuality
SIO_000300: 1.14717e2

MQRankSum
type: SiteQuality
SIO_000300: -2.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.082e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e0

MQ
type: SiteQuality
SIO_000300: 5.467e1

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 12
allele frequency: 7.702182284980745e-3
allele num: 1558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.708074534161491e-3
allele num: 6440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.592356687898089e-3
allele num: 628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.14717e2

DP
type: SiteQuality
SIO_000300: 4.05117e5

MQRankSum
type: SiteQuality
SIO_000300: -2.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.997e0

MQ
type: SiteQuality
SIO_000300: 5.467e1

QD
type: SiteQuality
SIO_000300: 8.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.082e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 16459
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 469
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 153
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variant carriers: 7

GenotypeQuality
all individuals: 1861
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variant carriers: 3

GenotypeQuality
all individuals: 543
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variant carriers: 4

GenotypeQuality
all individuals: 20814
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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bin: 6.25e1
variant carriers: 10

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 477
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variant carriers: 5

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 52

GenotypeQuality
all individuals: 1166
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 391
bin: 6.75e1
variant carriers: 4

Latino
type: Population
allele count: 5
allele frequency: 1.515151515151515e-2
allele num: 330
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 2.962962962962963e-2
allele num: 1080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 1.351981351981352e-2
allele num: 4290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 9.852216748768473e-3
allele num: 406
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 2.641392169049099e-3
allele num: 6436
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.538461538461539e-2
allele num: 130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 3.49e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

DP
type: SiteQuality
SIO_000300: 3.88698e5

FS
type: SiteQuality
SIO_000300: 1.36953e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.264e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: -7.892e1

GenotypeQuality
all individuals: 377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
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variant carriers: 0

GenotypeQuality
all individuals: 3657
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variant carriers: 0

GenotypeQuality
all individuals: 436
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 580
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5537
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 324
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variant carriers: 0

GenotypeQuality
all individuals: 26882
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GenotypeQuality
all individuals: 700
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GenotypeQuality
all individuals: 1283
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 4.2168e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.268e0

QD
type: SiteQuality
SIO_000300: 4.65e0

GenotypeQuality
all individuals: 12507
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
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variant carriers: 1

GenotypeQuality
all individuals: 288
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variant carriers: 3

GenotypeQuality
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 376
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 1

GenotypeQuality
all individuals: 813
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 427
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GenotypeQuality
all individuals: 1076
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 151
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variant carriers: 1

GenotypeQuality
all individuals: 191
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variant carriers: 2

GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 4.005572971090212e-3
allele num: 5742
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.172839506172839e-3
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.557632398753894e-2
allele num: 1284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.76678445229682e-3
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305142260506395e-4
allele num: 7662
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: -1.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.59e-2

MQ
type: SiteQuality
SIO_000300: 5.542e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.925e0

FS
type: SiteQuality
SIO_000300: 1.16125e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.871e1

QD
type: SiteQuality
SIO_000300: 7.38e0

DP
type: SiteQuality
SIO_000300: 4.13535e5

GenotypeQuality
all individuals: 442
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variant carriers: 0

GenotypeQuality
all individuals: 26996
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1040
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1203
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variant carriers: 1

GenotypeQuality
all individuals: 2232
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.152823920265781e-4
allele num: 2408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.686e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.54e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 2.647e1

DP
type: SiteQuality
SIO_000300: 4.16084e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 2175
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GenotypeQuality
all individuals: 461
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GenotypeQuality
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GenotypeQuality
all individuals: 1952
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 281
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GenotypeQuality
all individuals: 337
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 491
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GenotypeQuality
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GenotypeQuality
all individuals: 2067
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GenotypeQuality
all individuals: 351
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.13347022587269e-4
allele num: 1948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.694e0

FS
type: SiteQuality
SIO_000300: 1.2991e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.059e0

MQ
type: SiteQuality
SIO_000300: 4.587e1

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

DP
type: SiteQuality
SIO_000300: 4.15785e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.047e-1

GenotypeQuality
all individuals: 25597
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variant carriers: 0

GenotypeQuality
all individuals: 2236
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 1818
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GenotypeQuality
all individuals: 433
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GenotypeQuality
all individuals: 348
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 439
bin: 7.25e1
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GenotypeQuality
all individuals: 496
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GenotypeQuality
all individuals: 353
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GenotypeQuality
all individuals: 965
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.087294190742467e-3
allele num: 6438
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.3121387283237e-3
allele num: 1730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

VQSLOD
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SIO_000300: -5.254e1

FS
type: SiteQuality
SIO_000300: 1.07291e2

BaseQRankSum
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SIO_000300: -3.289e0

ReadPosRankSum
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SIO_000300: -1.003e0

DP
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SIO_000300: 4.2984e5

InbreedingCoeff
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SIO_000300: -7.72e-2

MQRankSum
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SIO_000300: -5.92e-1

MQ
type: SiteQuality
SIO_000300: 5.34e1

QD
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SIO_000300: 3.63e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 6

GenotypeQuality
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bin: 2.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 5

GenotypeQuality
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bin: 6.25e1
variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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bin: 8.25e1
variant carriers: 3

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.731343283582089e-3
allele num: 268
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 5.903187721369539e-3
allele num: 1694
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.19e0

DP
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SIO_000300: 1.75167e5

ReadPosRankSum
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SIO_000300: 6.33e-1

MQRankSum
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FS
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SIO_000300: 9.57e-1

InbreedingCoeff
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SIO_000300: -7.870000000000001e-2

BaseQRankSum
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SIO_000300: -7.27e-1

ClippingRankSum
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SIO_000300: 3.61e-1

QD
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SIO_000300: 1.307e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 6.34e-2

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 3.58e-1

DP
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SIO_000300: 1.76146e5

BaseQRankSum
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SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.34e-2

BaseQRankSum
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SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

DP
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SIO_000300: 1.76146e5

QD
type: SiteQuality
SIO_000300: 1.466e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 42

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 2

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 23
allele frequency: 4.121863799283154e-2
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.150747986191024e-3
allele num: 1738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
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MQRankSum
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FS
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InbreedingCoeff
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DP
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BaseQRankSum
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SIO_000300: 4.06e-1

ClippingRankSum
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SIO_000300: 4.06e-1

MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 6.557377049180328e-3
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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FS
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SIO_000300: 1.239e0

ReadPosRankSum
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SIO_000300: -3.82e-1

QD
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.639344262295082e-3
allele num: 610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1830
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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DP
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
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DP
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SIO_000300: 2.43307e5

BaseQRankSum
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SIO_000300: 9.88e-1

VQSLOD
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SIO_000300: 3.61e0

InbreedingCoeff
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SIO_000300: -6.65e-2

QD
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SIO_000300: 1.143e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

FS
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SIO_000300: 0.0e0

QD
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 35

GenotypeQuality
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GenotypeQuality
all individuals: 11
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variant carriers: 5

Latino
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allele count: 2
allele frequency: 8.849557522123894e-3
allele num: 226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.030927835051546e-3
allele num: 970
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 6.060606060606061e-3
allele num: 3300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.76e-2

QD
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BaseQRankSum
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SIO_000300: -1.2e0

DP
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SIO_000300: 2.90185e5

ReadPosRankSum
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SIO_000300: 3.58e-1

MQRankSum
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SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.264e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030927835051546e-3
allele num: 970
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.76e-2

FS
type: SiteQuality
SIO_000300: 1.264e0

BaseQRankSum
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SIO_000300: -1.2e0

MQRankSum
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SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.90185e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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QD
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MQ
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SIO_000300: 5.604e1

BaseQRankSum
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ClippingRankSum
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SIO_000300: 4.06e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQ
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 5.494505494505495e-4
allele num: 1820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.493e0

ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 7.215007215007215e-4
allele num: 1386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1890
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1090
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

FS
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MQ
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MQRankSum
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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ClippingRankSum
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FS
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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East Asian
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QD
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DP
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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Other
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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DP
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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MQ
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FS
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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DP
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SIO_000300: 5.15341e5

GenotypeDepth
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36612
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.353240152477764e-4
allele num: 1574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

VQSLOD
type: SiteQuality
SIO_000300: -7.8e-3

QD
type: SiteQuality
SIO_000300: 9.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

DP
type: SiteQuality
SIO_000300: 5.25823e5

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8798
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1922
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variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2158
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.400960384153661e-3
allele num: 1666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.76166804750069e-4
allele num: 14484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

FS
type: SiteQuality
SIO_000300: 1.252e0

DP
type: SiteQuality
SIO_000300: 5.33728e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

GenotypeDepth
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 6867
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2033
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1075
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variant carriers: 0

GenotypeQuality
all individuals: 7249
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 1

GenotypeQuality
all individuals: 441
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variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 5.83734e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.382e1

QD
type: SiteQuality
SIO_000300: 6.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
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variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.553116587285152e-4
allele num: 19316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 6.03292e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

QD
type: SiteQuality
SIO_000300: 1.182e1

FS
type: SiteQuality
SIO_000300: 1.163e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeDepth
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.177055290950507e-5
allele num: 19316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 6.03292e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5402
bin: 7.5e0
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GenotypeQuality
all individuals: 536
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21946
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

QD
type: SiteQuality
SIO_000300: 1.012e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

DP
type: SiteQuality
SIO_000300: 6.38828e5

MQ
type: SiteQuality
SIO_000300: 5.739e1

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
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GenotypeQuality
all individuals: 253
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21946
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.012e1

DP
type: SiteQuality
SIO_000300: 6.38828e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -3.11e-1

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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Other
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South Asian
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African
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East Asian
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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FS
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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ReadPosRankSum
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QD
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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allele num: 39940
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MQ
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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Other
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Latino
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allele frequency: 2.523003858711784e-3
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African
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allele frequency: 2.984642132715155e-2
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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QD
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DP
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele frequency: 2.787844995818232e-4
allele num: 7174
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.839e0

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: 2.13e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.111575657755818e-5
allele num: 47358
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 1.47e0

ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.34e-1

QD
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SIO_000300: 1.121e1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7110
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.325908247149297e-4
allele num: 7542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.237930180737806e-4
allele num: 48468
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.928e1

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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FS
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QD
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ClippingRankSum
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SIO_000300: -3.55e-1

VQSLOD
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SIO_000300: 1.38e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.903891554337065e-5
allele num: 52524
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 2.52e0

MQRankSum
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SIO_000300: -9.9e-2

ReadPosRankSum
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SIO_000300: -5.41e-1

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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SIO_000300: 8.2e-1

DP
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QD
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SIO_000300: 9.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.858943376584749e-5
allele num: 53794
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: -8.9e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.505491937368544e-4
allele num: 8558
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 54734
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
allele count: 0
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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allele count: 19
allele frequency: 3.445774392455567e-4
allele num: 55140
num of homozygotes: 0

Latino
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allele frequency: 2.099517111064455e-4
allele num: 9526
num of homozygotes: 0

South Asian
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allele frequency: 7.216494845360825e-3
allele num: 8730
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ReadPosRankSum
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SIO_000300: 2.67e-1

InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

European (Finnish)
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allele frequency: 2.347417840375587e-4
allele num: 4260
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.386383223211721e-5
allele num: 55696
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -2.33e-1

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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QD
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MQ
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.729385722191477e-5
allele num: 57824
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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SIO_000300: -2.5e-3

ClippingRankSum
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SIO_000300: 6.23e-1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.707883590654461e-5
allele num: 58552
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.232741617357002e-4
allele num: 8112
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
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SIO_000300: 5.82e1

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.2e-3

BaseQRankSum
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DP
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MQRankSum
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SIO_000300: 5.05e-1

FS
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: 6.900000000000001e-2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58758
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.602458229306702e-5
allele num: 10414
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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DP
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ReadPosRankSum
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MQ
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SIO_000300: 5.773e1

MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58884
num of homozygotes: 0

South Asian
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allele num: 10518
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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Latino
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allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

East Asian
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 60330
num of homozygotes: 0

Latino
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South Asian
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African
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QD
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FS
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61228
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.423294383716548e-5
allele num: 10612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.256529e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.716e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.657e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 7.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.549e0

FS
type: SiteQuality
SIO_000300: 1.419e0

GenotypeDepth
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6664
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44738
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12382
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.866716445771887e-4
allele num: 10714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.807e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.446e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

MQRankSum
type: SiteQuality
SIO_000300: -6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 8.09e0

VQSLOD
type: SiteQuality
SIO_000300: -7.775e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.270476e6

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6492
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.451196696987291e-5
allele num: 62004
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 2.893270467209601e-3
allele num: 9332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.304056568663938e-5
allele num: 10748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0