19-13226237-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226237
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226237
    reference: chr 19
allele count: 2
allele frequency: 1.656012983141788e-5
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.207G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.526G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.298G>A
  hgvsp: ENSP00000466966.1:p.Val100Ile
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-146G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.695G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.497G>A
  hgvsp: ENSP00000221504.7:p.Arg166His
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.497G>A
  hgvsp: ENSP00000350352.4:p.Arg166His
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.497G>A
  hgvsp: ENSP00000467938.1:p.Arg166His
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.478G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-21G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.454G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.497G>A
  hgvsp: ENSP00000466967.1:p.Arg166His
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.497G>A
  hgvsp: ENSP00000416149.1:p.Arg166His
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg166His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

19-13226238-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226238
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226238
    reference: chr 19
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.496C>T
  hgvsp: ENSP00000466967.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.694C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.525C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.496C>T
  hgvsp: ENSP00000416149.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.206C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-147C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.477C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.496C>T
  hgvsp: ENSP00000350352.4:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.496C>T
  hgvsp: ENSP00000467938.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.496C>T
  hgvsp: ENSP00000221504.7:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.297C>T
  hgvsp: ENST00000591717.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-22C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.453C>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35287
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg166Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-13226242-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226242
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226242
    reference: chr 19
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.492C>A
  hgvsp: ENST00000357720.4:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-151C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.473C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.492C>A
  hgvsp: ENST00000592814.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.293C>A
  hgvsp: ENSP00000466966.1:p.Ala98Asp
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.492C>A
  hgvsp: ENST00000437766.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-26C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.449C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.492C>A
  hgvsp: ENST00000221504.8:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.521C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.202C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.492C>A
  hgvsp: ENST00000592062.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.690C>A
  variant of: http://identifiers.org/hgnc/25980
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala98Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-13226269-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226269
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226269
    reference: chr 19
allele count: 2
allele frequency: 1.66939334245935e-5
allele num: 119804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.465T>C
  hgvsp: ENST00000221504.8:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.465T>C
  hgvsp: ENST00000437766.1:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.663T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.465T>C
  hgvsp: ENST00000592814.1:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-178T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-53T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.266T>C
  hgvsp: ENSP00000466966.1:p.Met89Thr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.529T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.465T>C
  hgvsp: ENST00000357720.4:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.446T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.422T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.465T>C
  hgvsp: ENST00000592062.1:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.494T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.175T>C
  variant of: http://identifiers.org/hgnc/25980
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met89Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-13226270-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226270
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226270
    reference: chr 19
allele count: 1
allele frequency: 8.349475652928997e-6
allele num: 119768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.464A>G
  hgvsp: ENSP00000467938.1:p.His155Arg
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.662A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.464A>G
  hgvsp: ENSP00000466967.1:p.His155Arg
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.464A>G
  hgvsp: ENSP00000350352.4:p.His155Arg
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.528A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.265A>G
  hgvsp: ENSP00000466966.1:p.Met89Val
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.421A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-179A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.464A>G
  hgvsp: ENSP00000221504.7:p.His155Arg
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.174A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.464A>G
  hgvsp: ENSP00000416149.1:p.His155Arg
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-54A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.493A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.445A>G
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15646
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His155Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

19-13226271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226271
    reference: chr 19
allele count: 1
allele frequency: 8.353939717970996e-6
allele num: 119704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.463C>T
  hgvsp: ENSP00000221504.7:p.His155Tyr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.463C>T
  hgvsp: ENSP00000467938.1:p.His155Tyr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.463C>T
  hgvsp: ENSP00000416149.1:p.His155Tyr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.661C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.173C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.264C>T
  hgvsp: ENST00000591717.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-180C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.527C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.463C>T
  hgvsp: ENSP00000350352.4:p.His155Tyr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.444C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.463C>T
  hgvsp: ENSP00000466967.1:p.His155Tyr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-55C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.420C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.492C>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His155Tyr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

19-13226276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226276
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226276
    reference: chr 19
allele count: 1
allele frequency: 8.374227477515199e-6
allele num: 119414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-60G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-185G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.259G>A
  hgvsp: ENSP00000466966.1:p.Ala87Thr
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.487G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.168G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.458G>A
  hgvsp: ENSP00000416149.1:p.Gly153Asp
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*184G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.439G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.415G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.458G>A
  hgvsp: ENSP00000221504.7:p.Gly153Asp
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.458G>A
  hgvsp: ENSP00000466967.1:p.Gly153Asp
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.656G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.522G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.458G>A
  hgvsp: ENSP00000350352.4:p.Gly153Asp
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.458G>A
  hgvsp: ENSP00000467938.1:p.Gly153Asp
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly153Asp
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-13226281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226281
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226281
    reference: chr 19
allele count: 1
allele frequency: 8.39545973537511e-6
allele num: 119112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-1G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-65G>C
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.454-1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-13226281-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226281
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226280
    reference: chr 19
allele count: 2
allele frequency: 1.679091947075022e-5
allele num: 119112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-66delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-2delA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-2delA
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.454-2delA
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: CT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-13226286-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226286
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226286
    reference: chr 19
allele count: 2
allele frequency: 1.682935038707506e-5
allele num: 118840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-70C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-6C>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-6C>A
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.454-6C>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-13226288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226288
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226288
    reference: chr 19
allele count: 4
allele frequency: 3.366663300003367e-5
allele num: 118812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-72T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-8T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-8T>C
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28820
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.454-8T>C
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-13226289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226289
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226289
    reference: chr 19
allele count: 2
allele frequency: 1.684153796924735e-5
allele num: 118754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-73C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-9C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-9C>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-13226296-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226296
    reference: chr 19
allele count: 4
allele frequency: 3.378435446544705e-5
allele num: 118398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-80C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-16C>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-16C>G
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27622
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-13226301-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226301
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226301
    reference: chr 19
allele count: 50
allele frequency: 4.228973543541512e-4
allele num: 118232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-85G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-21G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-21G>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-13226317-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226317
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226317
    reference: chr 19
allele count: 3
allele frequency: 2.557501150875518e-5
allele num: 117302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-101T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-37T>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-37T>C
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-13226318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226318
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226318
    reference: chr 19
allele count: 1
allele frequency: 8.505137102810097e-6
allele num: 117576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-102G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-38G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-38G>A
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-13226325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226325
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226325
    reference: chr 19
allele count: 1
allele frequency: 8.523695874531197e-6
allele num: 117320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.483-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.454-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.175-109G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.435-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.454-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.454-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*180-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*71-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.652-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.454-45G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.454-45G>A
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-11085662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085662
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085662
    reference: chr 21
allele count: 118
allele frequency: 9.190031152647975e-2
allele num: 1284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11884G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11884G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 7.5e0
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 2.5e0
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4535
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.75e1
  variant carriers: 173
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 13
num of homozygotes: 0
population: African
  type: Population
  allele count: 5
  allele frequency: 3.90625e-2
  allele num: 128
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

21-11085664-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
allele count: 189
allele frequency: 3.399280575539568e-1
allele num: 556
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11882C>G
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11882C>G
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.5e0
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 417
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 6.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 2.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.75e1
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 32
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 4
  allele frequency: 5.0e-1
  allele num: 8
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

21-11085664-G-GCAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085667
    reference: chr 21
allele count: 3
allele frequency: 5.39568345323741e-3
allele num: 556
alternate allele: GCAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11879_379+11881dupGTG
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11879_324+11881dupGTG
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

21-11085664-GCACCACCACCATCACCACTACCACCACCACCACTACCACCACTACCACCACCACCACTACCACCACCAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085595
    reference: chr 21
allele count: 13
allele frequency: 2.338129496402878e-2
allele num: 556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.5e0
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 2.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 8
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GCACCACCACCATCACCACTACCACCACCACCACTACCACCACTACCACCACCACCACTACCACCACCAC
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

21-11085664-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11882C>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11882C>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 32
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 40
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

21-11085665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085665
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085665
    reference: chr 21
allele count: 2
allele frequency: 1.081081081081081e-3
allele num: 1850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11881G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11881G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7998
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 778
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 50
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

21-11085667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085667
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085667
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 2060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11879G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11879G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 560
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 28
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

21-11085668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085668
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085668
    reference: chr 21
allele count: 46
allele frequency: 1.204188481675393e-1
allele num: 382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11878G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11878G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 81
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 74
genotype quality: GenotypeQuality
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  variant carriers: 10
genotype quality: GenotypeQuality
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  variant carriers: 6
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 1.5e-1
  allele num: 20
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-11085670-CCACCAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085670
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085664
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: CCACCAT
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

21-11085671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085671
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085671
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11875G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11875G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 26
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/21-11085673-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085673
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085673
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11873G>T
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11873G>T
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-11085674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085674
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085674
    reference: chr 21
allele count: 1
allele frequency: 1.724137931034483e-3
allele num: 580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11872G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11872G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6424
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

21-11085674-CATCACCACT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085674
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085665
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6424
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: CATCACCACT
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

21-11085676-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085676
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085676
    reference: chr 21
allele count: 2
allele frequency: 1.136363636363636e-2
allele num: 176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11870A>G
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11870A>G
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

21-11085676-TCACCACTACCACCACCACCACTAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085676
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085652
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 176
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: TCACCACTACCACCACCACCACTAC
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

21-11085677-CACCACT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085677
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085671
    reference: chr 21
allele count: 2
allele frequency: 6.060606060606061e-3
allele num: 330
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 2.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3970
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21
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genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: CACCACT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

21-11085678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085678
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085678
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11868T>C
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11868T>C
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 144
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

21-11085683-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085683
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085683
    reference: chr 21
allele count: 38
allele frequency: 5.0e-1
allele num: 76
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11863A>G
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11863A>G
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.5e0
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.75e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.5e0
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 2.5e0
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 25
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

21-11085683-TACC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085683
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085680
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 76
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11860_379+11862delGGT
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11860_324+11862delGGT
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 38
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: TACC
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

21-11085683-TACCACCACCACCACTACCACCACTACCACCACCACCACTACCACC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085683
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085638
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 76
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: TACCACCACCACCACTACCACCACTACCACCACCACCACTACCACC
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

21-11085685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085685
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085685
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11861G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11861G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

21-11085686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085686
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085686
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11860G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11860G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

21-11085689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085689
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085689
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11857G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11857G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

21-11085691-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085691
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085691
    reference: chr 21
allele count: 18
allele frequency: 1.01123595505618e-1
allele num: 178
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11855G>C
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11855G>C
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 2.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 62
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  variant carriers: 61
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/21-11085691-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085691
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085691
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11855G>T
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11855G>T
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 86
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

21-11085691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085691
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085691
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 178
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11855G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11855G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 86
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/21-11085692-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085692
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085692
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11854G>T
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11854G>T
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
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  allele num: 48
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
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21-11085692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085692
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085692
    reference: chr 21
allele count: 20
allele frequency: 7.936507936507936e-2
allele num: 252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11854G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11854G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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population: South Asian
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  allele num: 126
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population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
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21-11085694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085694
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085694
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 480
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11852G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11852G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
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site quality: BaseQRankSum
site quality: QD
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site quality: ReadPosRankSum

21-11085697-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085697
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085697
    reference: chr 21
allele count: 1
allele frequency: 1.506024096385542e-3
allele num: 664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11849G>C
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11849G>C
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 20
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

21-11085698-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085698
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085698
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 34
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11848A>G
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11848A>G
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

21-11085698-TACC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085698
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085695
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 34
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11845_324+11847delGGT
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11845_379+11847delGGT
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: TACC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

21-11085700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085700
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085700
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 356
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11846G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11846G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5852
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 172
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

21-11085701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085701
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085701
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 920
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11845G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11845G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 464
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/19-13226394-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226394
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226394
    reference: chr 19
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-114G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-114G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-114G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-114G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-114G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+46G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+46G>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

21-11085702-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085702
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085702
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11844T>C
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11844T>C
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8957
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 114
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

21-11085707-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085707
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085707
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 32
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11839A>G
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11839A>G
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4416
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

21-11085707-TACCACCACCACCACTACCACCACCACCACCACCACCATCACCACCACCACCACCACCACCATCATCACC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085707
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085638
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 32
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4416
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: TACCACCACCACCACTACCACCACCACCACCACCACCATCACCACCACCACCACCACCACCATCATCACC
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

21-11085709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085709
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085709
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 1120
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11837G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11837G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9881
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 594
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

21-11085712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085712
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085712
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 1076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11834G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11834G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5667
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 290
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

21-11085712-CCACCACCACTACCACCACCACCACCACCACCATCACCACCACCACCACCACCACCAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085712
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085655
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 1076
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: CCACCACCACTACCACCACCACCACCACCACCATCACCACCACCACCACCACCACCAT
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

21-11085715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085715
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085715
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 458
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11831G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11831G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

21-11085716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085716
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085716
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 616
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11830G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11830G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 252
  num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

21-11085719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11085719
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 11085719
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 1136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000474011
  gene symbol: BAGE2
  hgvsc: ENST00000474011.1:n.379+11827G>A
  variant of: http://identifiers.org/hgnc/15723
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187172
  ensembl transcript: ENST00000470054
  gene symbol: BAGE2
  hgvsc: ENST00000470054.1:n.324+11827G>A
  variant of: http://identifiers.org/hgnc/15723
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11629
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 114
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

19-13226394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226394
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226394
    reference: chr 19
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-114G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-114G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-114G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-114G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+46G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-114G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+46G>A
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS

19-13226395-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226395
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226395
    reference: chr 19
allele count: 6
allele frequency: 4.964585953531475e-5
allele num: 120856
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-115A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-115A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-115A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-115A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-115A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+45A>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+45A>G
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-13226398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226398
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226398
    reference: chr 19
allele count: 15
allele frequency: 1.241413556236034e-4
allele num: 120830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-118G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-118G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-118G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-118G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-118G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+42G>A
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+42G>A
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-13226399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226399
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226399
    reference: chr 19
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-119C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-119C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-119C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-119C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+41C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-119C>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-13226403-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226403
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226403
    reference: chr 19
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-123T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-123T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-123T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-123T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-123T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+37T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+37T>G
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-13226404-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226404
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226405
    reference: chr 19
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-125dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-125dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-125dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-125dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-125dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+35dupA
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+35dupA
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-13226418-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226418
    reference: chr 19
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-138T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-138T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-138T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-138T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-138T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+22T>G
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+22T>G
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-13226419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226419
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226419
    reference: chr 19
allele count: 2
allele frequency: 1.651718613217052e-5
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-139C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-139C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-139C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-139C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+21C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-139C>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+21C>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

19-13226433-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226433
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226432
    reference: chr 19
allele count: 2308
allele frequency: 1.90385059557198e-2
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*179+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.482+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-154delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.174+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.453+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.453+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-154delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.453+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.453+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-154delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.434+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.651+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.453+6delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-154delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-154delG
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*70+6delG
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 9.75e1
  variant carriers: 1907
genotype quality: GenotypeQuality
hgvs: c.453+6delG
num of homozygotes: 28
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: GC
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-13226455-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226455
    reference: chr 19
allele count: 35
allele frequency: 2.884932410154962e-4
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.636G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.467G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-175G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.438G>T
  hgvsp: ENST00000592814.1:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.438G>T
  hgvsp: ENST00000221504.8:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.438G>T
  hgvsp: ENST00000357720.4:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*164G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*55G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-175G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-175G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.419G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.438G>T
  hgvsp: ENST00000437766.1:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.438G>T
  hgvsp: ENST00000592062.1:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.159G>T
  hgvsp: ENST00000587633.1:c.159G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000465370
  ensembl transcript: ENST00000587487
  gene symbol: TRMT1
  hgvsc: ENST00000587487.1:c.-189-175G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-175G>T
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592892
  gene symbol: TRMT1
  hgvsc: ENST00000592892.1:n.540G>T
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val146Val
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

19-13226455-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13226455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 13226455
    reference: chr 19
allele count: 4
allele frequency: 3.297065611605671e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593257
  gene symbol: TRMT1
  hgvsc: ENST00000593257.1:n.164-175G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592892
  gene symbol: TRMT1
  hgvsc: ENST00000592892.1:n.540G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000221504
  ensembl transcript: ENST00000221504
  gene symbol: TRMT1
  hgvsc: ENST00000221504.8:c.438G>C
  hgvsp: ENST00000221504.8:c.438G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000467938
  ensembl transcript: ENST00000592814
  gene symbol: TRMT1
  hgvsc: ENST00000592814.1:c.438G>C
  hgvsp: ENST00000592814.1:c.438G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588813
  gene symbol: TRMT1
  hgvsc: ENST00000588813.1:n.419G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466966
  ensembl transcript: ENST00000591717
  gene symbol: TRMT1
  hgvsc: ENST00000591717.1:c.255-175G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466967
  ensembl transcript: ENST00000592062
  gene symbol: TRMT1
  hgvsc: ENST00000592062.1:c.438G>C
  hgvsp: ENST00000592062.1:c.438G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000591425
  gene symbol: TRMT1
  hgvsc: ENST00000591425.1:n.411-175G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000466716
  ensembl transcript: ENST00000587633
  gene symbol: TRMT1
  hgvsc: ENST00000587633.1:c.159G>C
  hgvsp: ENST00000587633.1:c.159G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000350352
  ensembl transcript: ENST00000357720
  gene symbol: TRMT1
  hgvsc: ENST00000357720.4:c.438G>C
  hgvsp: ENST00000357720.4:c.438G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468377
  ensembl transcript: ENST00000586224
  gene symbol: TRMT1
  hgvsc: ENST00000586224.1:c.*55G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000592729
  gene symbol: TRMT1
  hgvsc: ENST00000592729.1:n.518-175G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000416149
  ensembl transcript: ENST00000437766
  gene symbol: TRMT1
  hgvsc: ENST00000437766.1:c.438G>C
  hgvsp: ENST00000437766.1:c.438G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000588511
  gene symbol: TRMT1
  hgvsc: ENST00000588511.1:n.636G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104907
  ensembl transcript: ENST00000593157
  gene symbol: TRMT1
  hgvsc: ENST00000593157.1:n.467G>C
  variant of: http://identifiers.org/hgnc/25980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104907
  ensembl protein: ENSP00000468031
  ensembl transcript: ENST00000588746
  gene symbol: TRMT1
  hgvsc: ENST00000588746.1:c.*164G>C
  variant of: http://identifiers.org/hgnc/25980
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Val146Val
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 12
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15895
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 40247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.506413e6

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 1.786e0

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40202
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.18e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.303e0

DP
type: SiteQuality
SIO_000300: 1.505843e6

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 675
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 37
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 3.037943919555245e-5
allele num: 65834
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African
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European (Finnish)
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Other
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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East Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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QD
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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VQSLOD
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MQRankSum
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QD
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FS
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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BaseQRankSum
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MQ
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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African
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Latino
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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FS
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2232
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.090807937194783e-5
allele num: 64708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 1.814e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.326e1

DP
type: SiteQuality
SIO_000300: 1.468497e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1579
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.669334400426837e-5
allele num: 14994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

DP
type: SiteQuality
SIO_000300: 1.469963e6

MQ
type: SiteQuality
SIO_000300: 5.871e1

FS
type: SiteQuality
SIO_000300: 8.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.826e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.02e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1891
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14890
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East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.162e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.17e1

FS
type: SiteQuality
SIO_000300: 2.077e0

DP
type: SiteQuality
SIO_000300: 1.482645e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.501e0

Latino
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allele count: 3
allele frequency: 1.875e-1
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 9.210526315789473e-2
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.0e-1
allele num: 20
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.538461538461539e-1
allele num: 26
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European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 1.049382716049383e-1
allele num: 324
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.2591e1

VQSLOD
type: SiteQuality
SIO_000300: -2.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.085e-1

DP
type: SiteQuality
SIO_000300: 9.2688e4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

MQ
type: SiteQuality
SIO_000300: 3.546e1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

African
type: Population
allele count: 13
allele frequency: 3.25e-1
allele num: 40
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 3.888888888888889e-1
allele num: 18
num of homozygotes: 0

South Asian
type: Population
allele count: 111
allele frequency: 3.425925925925926e-1
allele num: 324
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European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 3.291139240506329e-1
allele num: 158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 5.0e-1
allele num: 4
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.969e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 8.5417e4

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.2316e1

MQ
type: SiteQuality
SIO_000300: 3.378e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 2.08e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 6.172839506172839e-3
allele num: 324
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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QD
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.969e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 3.378e1

DP
type: SiteQuality
SIO_000300: 8.5417e4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

East Asian
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allele frequency: 0.0e0
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Other
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allele num: 4
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African
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allele frequency: 2.5e-2
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South Asian
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allele count: 5
allele frequency: 1.54320987654321e-2
allele num: 324
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European (Non-Finnish)
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allele count: 6
allele frequency: 3.79746835443038e-2
allele num: 158
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European (Finnish)
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allele frequency: 2.5e-1
allele num: 4
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.969e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2316e1

BaseQRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 3.378e1

Latino
type: Population
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allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
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East Asian
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South Asian
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allele frequency: 3.08641975308642e-3
allele num: 324
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MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
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SIO_000300: 8.5417e4

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

FS
type: SiteQuality
SIO_000300: 1.2316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.969e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 3.378e1

QD
type: SiteQuality
SIO_000300: 2.08e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.310986964618249e-4
allele num: 1074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 6.41025641025641e-3
allele num: 156
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European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.660000000000001e-2

MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 4.865e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 16
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African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 3.829e1

QD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.142857142857142e-2
allele num: 70
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.494252873563219e-1
allele num: 174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.018518518518518e-1
allele num: 108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.306e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

African
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European (Non-Finnish)
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
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Other
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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MQRankSum
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FS
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

Latino
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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Other
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South Asian
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FS
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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European (Non-Finnish)
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South Asian
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African
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East Asian
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Latino
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allele num: 6
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European (Finnish)
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allele frequency: NaN
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DP
type: SiteQuality
SIO_000300: 6.3005e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.63e-2

FS
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.324e1

MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
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Latino
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African
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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MQ
type: SiteQuality
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DP
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

East Asian
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Latino
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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MQ
type: SiteQuality
SIO_000300: 3.034e1

DP
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.080000000000001e-2

European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele frequency: 1.851851851851852e-2
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South Asian
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African
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Other
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MQ
type: SiteQuality
SIO_000300: 3.276e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.558e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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allele frequency: NaN
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African
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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East Asian
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Latino
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African
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allele frequency: 1.5625e-2
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European (Non-Finnish)
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allele frequency: 1.020408163265306e-2
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South Asian
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Other
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.2744e4

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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European (Non-Finnish)
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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African
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Other
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VQSLOD
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QD
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
SIO_000300: 2.125e0

ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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South Asian
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European (Non-Finnish)
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allele frequency: 5.0e-1
allele num: 20
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European (Finnish)
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African
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allele frequency: 5.0e-1
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Latino
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allele frequency: NaN
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East Asian
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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Other
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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BaseQRankSum
type: SiteQuality
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QD
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European (Non-Finnish)
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African
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South Asian
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MQRankSum
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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European (Non-Finnish)
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African
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allele num: 70
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European (Finnish)
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allele frequency: NaN
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Latino
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East Asian
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South Asian
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ReadPosRankSum
type: SiteQuality
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DP
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
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European (Finnish)
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African
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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VQSLOD
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MQ
type: SiteQuality
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DP
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QD
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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African
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Latino
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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African
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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allele frequency: 3.488372093023256e-2
allele num: 86
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European (Finnish)
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allele count: 0
allele frequency: NaN
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.146e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.887e-1

DP
type: SiteQuality
SIO_000300: 5.4943e4

QD
type: SiteQuality
SIO_000300: 3.227e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.227e1

FS
type: SiteQuality
SIO_000300: 1.2322e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.554e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.887e-1

DP
type: SiteQuality
SIO_000300: 5.4943e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQ
type: SiteQuality
SIO_000300: 3.146e1

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.146e1

FS
type: SiteQuality
SIO_000300: 1.2322e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.887e-1

QD
type: SiteQuality
SIO_000300: 3.227e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 5.4943e4

VQSLOD
type: SiteQuality
SIO_000300: 2.554e1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.293e-1

MQ
type: SiteQuality
SIO_000300: 3.074e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 5.5429e4

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 9.625e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 3.337e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 2.291666666666667e-1
allele num: 48
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.882352941176471e-2
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.074e1

DP
type: SiteQuality
SIO_000300: 5.5429e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.625e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.293e-1

QD
type: SiteQuality
SIO_000300: 3.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.04e0

DP
type: SiteQuality
SIO_000300: 5.834e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.65e-2

FS
type: SiteQuality
SIO_000300: 5.219e0

MQ
type: SiteQuality
SIO_000300: 3.231e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 2.563e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384616e-3
allele num: 104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.0738e4

FS
type: SiteQuality
SIO_000300: 1.1812e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 2.976e1

QD
type: SiteQuality
SIO_000300: 2.77e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.38e-2

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.681e-1

QD
type: SiteQuality
SIO_000300: 2.601e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 1.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

DP
type: SiteQuality
SIO_000300: 6.2597e4

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.681e-1

QD
type: SiteQuality
SIO_000300: 2.601e1

FS
type: SiteQuality
SIO_000300: 1.524e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

DP
type: SiteQuality
SIO_000300: 6.2597e4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.057e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 3.136e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 3.151e1

DP
type: SiteQuality
SIO_000300: 6.6725e4

VQSLOD
type: SiteQuality
SIO_000300: -1.831e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 3.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.498e1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 6.9193e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.57e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.274e1

GenotypeDepth
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 185
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1461
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15792
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8859
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5826
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.238e0

FS
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

DP
type: SiteQuality
SIO_000300: 2.086528e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.76e-2

MQ
type: SiteQuality
SIO_000300: 2.703e1

DP
type: SiteQuality
SIO_000300: 6.988e4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.68e0

QD
type: SiteQuality
SIO_000300: 1.339e1

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 2.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.794e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

DP
type: SiteQuality
SIO_000300: 7.7016e4

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 2.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.794e-1

DP
type: SiteQuality
SIO_000300: 7.7016e4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.651e0

QD
type: SiteQuality
SIO_000300: 3.232e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

DP
type: SiteQuality
SIO_000300: 8.1313e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.504e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 4.64e0

FS
type: SiteQuality
SIO_000300: 3.332e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 8.5365e4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 8.5365e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.504e-1

QD
type: SiteQuality
SIO_000300: 4.64e0

FS
type: SiteQuality
SIO_000300: 3.332e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.214e-1

QD
type: SiteQuality
SIO_000300: 1.607e1

InbreedingCoeff
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SIO_000300: -1.284e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 8.7313e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 8.7823e4

QD
type: SiteQuality
SIO_000300: 1.797e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
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SIO_000300: -1.111e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: -1.986e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.8176e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.649999999999999e-2

MQ
type: SiteQuality
SIO_000300: 4.036e1

VQSLOD
type: SiteQuality
SIO_000300: -3.657e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.217e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.238e0

DP
type: SiteQuality
SIO_000300: 2.086528e6

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeDepth
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bin: 2.75e1
variant carriers: 2

GenotypeDepth
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bin: 7.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 970
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.662109375e-4
allele num: 16384
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

DP
type: SiteQuality
SIO_000300: 2.086786e6

FS
type: SiteQuality
SIO_000300: 8.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

African
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allele count: 14
allele frequency: 1.354227123234668e-3
allele num: 10338
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
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South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

DP
type: SiteQuality
SIO_000300: 2.088616e6

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 5.144e0

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.214e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66428
num of homozygotes: 0

DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 2.093204e6

VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 6.057e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.992e0

ClippingRankSum
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SIO_000300: -1.375e0

QD
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SIO_000300: 1.529e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.102147e6

ClippingRankSum
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SIO_000300: -2.25e-1

FS
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SIO_000300: 8.003e0

MQ
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SIO_000300: 5.936e1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1945
allele frequency: 2.920595831581476e-2
allele num: 66596
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Other
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allele num: 902
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East Asian
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European (Finnish)
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allele frequency: 1.043241608708799e-2
allele num: 6614
num of homozygotes: 1

African
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allele count: 57
allele frequency: 5.484988452655889e-3
allele num: 10392
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Latino
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allele count: 188
allele frequency: 1.624049758120249e-2
allele num: 11576
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South Asian
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allele frequency: 2.242696084373864e-3
allele num: 16498
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VQSLOD
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FS
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 1.695736434108527e-3
allele num: 16512
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.119e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.63e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.975743e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1