http://identifiers.org/exac.variant/16-4847931-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847931
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847931
    reference: chr 16
allele count: 1
allele frequency: 8.672726011239853e-6
allele num: 115304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.623+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*686+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*433+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.*15+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.794+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.652+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.695+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.426-90G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.341+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-115G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.380+8G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2024+8G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.695+8G>T
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

16-4847939-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847939
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847939
    reference: chr 16
allele count: 2
allele frequency: 1.732621803312773e-5
allele num: 115432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.380T>C
  hgvsp: ENSP00000467459.1:p.Phe127Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.652T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2024T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-123T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.341T>C
  hgvsp: ENSP00000464699.1:p.Phe114Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.*15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.794T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.695T>C
  hgvsp: ENSP00000322832.5:p.Phe232Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.623T>C
  hgvsp: ENSP00000467509.1:p.Phe208Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*686T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.426-98T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*433T>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe232Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

16-4847939-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847939
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847939
    reference: chr 16
allele count: 1
allele frequency: 8.663109016563865e-6
allele num: 115432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-123T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.380T>A
  hgvsp: ENSP00000467459.1:p.Phe127Tyr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.695T>A
  hgvsp: ENSP00000322832.5:p.Phe232Tyr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.*15T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.794T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.623T>A
  hgvsp: ENSP00000467509.1:p.Phe208Tyr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.341T>A
  hgvsp: ENSP00000464699.1:p.Phe114Tyr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2024T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.426-98T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*433T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.652T>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*686T>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe232Tyr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-4847943-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847943
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847943
    reference: chr 16
allele count: 4
allele frequency: 3.466805338880222e-5
allele num: 115380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*429A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-127A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.790A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*682A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.*11A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.648A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.619A>G
  hgvsp: ENSP00000467509.1:p.Met207Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.337A>G
  hgvsp: ENSP00000464699.1:p.Met113Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.376A>G
  hgvsp: ENSP00000467459.1:p.Met126Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.691A>G
  hgvsp: ENSP00000322832.5:p.Met231Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.426-102A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2020A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10549
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met231Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

16-4847948-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847948
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847948
    reference: chr 16
allele count: 3
allele frequency: 2.600374453921365e-5
allele num: 115368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*424G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.426-107G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2015G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.*6G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.686G>C
  hgvsp: ENSP00000322832.5:p.Gly229Ala
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.785G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.371G>C
  hgvsp: ENSP00000467459.1:p.Gly124Ala
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.643G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-132G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.332G>C
  hgvsp: ENSP00000464699.1:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.614G>C
  hgvsp: ENSP00000467509.1:p.Gly205Ala
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*677G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly229Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

16-4847956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847956
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847956
    reference: chr 16
allele count: 41
allele frequency: 3.549967963703742e-4
allele num: 115494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.606T>C
  hgvsp: ENST00000591392.1:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.691T>C
  hgvsp: ENSP00000468343.1:p.Ter231GlnextTer104
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*669T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.635T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.777T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.678T>C
  hgvsp: ENST00000322048.7:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2007T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.363T>C
  hgvsp: ENST00000587711.1:c.363T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.324T>C
  hgvsp: ENST00000586153.1:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-140T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.426-115T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*416T>C
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Ter231GlnextTer104
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-4847957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847957
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847957
    reference: chr 16
allele count: 6
allele frequency: 5.194985107709358e-5
allele num: 115496
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.677A>G
  hgvsp: ENSP00000322832.5:p.His226Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*415A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-141A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.323A>G
  hgvsp: ENSP00000464699.1:p.His108Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.690A>G
  hgvsp: ENST00000587377.1:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.605A>G
  hgvsp: ENSP00000467509.1:p.His202Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.362A>G
  hgvsp: ENSP00000467459.1:p.His121Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.776A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2006A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+115A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.634A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*668A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His226Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-4847959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847959
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847959
    reference: chr 16
allele count: 2
allele frequency: 1.734124093920161e-5
allele num: 115332
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.675G>A
  hgvsp: ENST00000322048.7:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.603G>A
  hgvsp: ENST00000591392.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*413G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*666G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.774G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.632G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+113G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2004G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-143G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.360G>A
  hgvsp: ENST00000587711.1:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.688G>A
  hgvsp: ENSP00000468343.1:p.Ala230Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.321G>A
  hgvsp: ENST00000586153.1:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala230Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4847962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847962
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847962
    reference: chr 16
allele count: 1
allele frequency: 8.661008141347653e-6
allele num: 115460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.357G>A
  hgvsp: ENST00000587711.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.600G>A
  hgvsp: ENST00000591392.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*410G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.685G>A
  hgvsp: ENSP00000468343.1:p.Ala229Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.672G>A
  hgvsp: ENST00000322048.7:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*663G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.629G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-146G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.771G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.318G>A
  hgvsp: ENST00000586153.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.2001G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+110G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala229Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-4847964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847964
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847964
    reference: chr 16
allele count: 1
allele frequency: 8.652165637058956e-6
allele num: 115578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*408G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+108G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.355G>A
  hgvsp: ENSP00000467459.1:p.Val119Met
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.316G>A
  hgvsp: ENSP00000464699.1:p.Val106Met
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.598G>A
  hgvsp: ENSP00000467509.1:p.Val200Met
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.683G>A
  hgvsp: ENSP00000468343.1:p.Gly228Asp
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.627G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-148G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*661G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.769G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.670G>A
  hgvsp: ENSP00000322832.5:p.Val224Met
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1999G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val224Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

16-4847965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847965
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847965
    reference: chr 16
allele count: 6
allele frequency: 5.193546153313483e-5
allele num: 115528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.682G>A
  hgvsp: ENSP00000468343.1:p.Gly228Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1998G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.768G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*407G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.597G>A
  hgvsp: ENST00000591392.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-149G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*660G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.315G>A
  hgvsp: ENST00000586153.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.669G>A
  hgvsp: ENST00000322048.7:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.354G>A
  hgvsp: ENST00000587711.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+107G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.626G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28564
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly228Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-4847967-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847967
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847967
    reference: chr 16
allele count: 1
allele frequency: 8.646928610957387e-6
allele num: 115648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.624G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*658G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+105G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.766G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.680G>T
  hgvsp: ENSP00000468343.1:p.Arg227Leu
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*405G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.667G>T
  hgvsp: ENSP00000322832.5:p.Ala223Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.313G>T
  hgvsp: ENSP00000464699.1:p.Ala105Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.595G>T
  hgvsp: ENSP00000467509.1:p.Ala199Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.352G>T
  hgvsp: ENSP00000467459.1:p.Ala118Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1996G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-151G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala223Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-4847967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847967
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847967
    reference: chr 16
allele count: 3
allele frequency: 2.594078583287217e-5
allele num: 115648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.352G>A
  hgvsp: ENSP00000467459.1:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1996G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.667G>A
  hgvsp: ENSP00000322832.5:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.766G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*405G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.624G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.680G>A
  hgvsp: ENSP00000468343.1:p.Arg227His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.313G>A
  hgvsp: ENSP00000464699.1:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.595G>A
  hgvsp: ENSP00000467509.1:p.Ala199Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*658G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+105G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-151G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28591
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10591
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala223Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-4847968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847968
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847968
    reference: chr 16
allele count: 2
allele frequency: 1.728608470181504e-5
allele num: 115700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+104C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*404C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*657C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1995C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.623C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.351C>T
  hgvsp: ENST00000587711.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.594C>T
  hgvsp: ENST00000591392.1:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.679C>T
  hgvsp: ENSP00000468343.1:p.Arg227Cys
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.765C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.312C>T
  hgvsp: ENST00000586153.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.666C>T
  hgvsp: ENST00000322048.7:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-152C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg227Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

16-4847973-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847973
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847973
    reference: chr 16
allele count: 1
allele frequency: 8.619797951936006e-6
allele num: 116012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.760G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.346G>C
  hgvsp: ENSP00000467459.1:p.Gly116Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.661G>C
  hgvsp: ENSP00000322832.5:p.Gly221Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*652G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1990G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.589G>C
  hgvsp: ENSP00000467509.1:p.Gly197Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.674G>C
  hgvsp: ENSP00000468343.1:p.Trp225Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.618G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*399G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.307G>C
  hgvsp: ENSP00000464699.1:p.Gly103Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+99G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-157G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly221Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

16-4847974-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847974
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847973
    reference: chr 16
allele count: 1
allele frequency: 8.614748449345278e-6
allele num: 116080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.616delC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.672delC
  hgvsp: ENSP00000468343.1:p.Trp225GlyfsTer68
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+97delC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.659delC
  hgvsp: ENSP00000322832.5:p.Ala220ValfsTer22
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1988delC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-159delC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*650delC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.758delC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.344delC
  hgvsp: ENSP00000467459.1:p.Ala115ValfsTer22
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.587delC
  hgvsp: ENSP00000467509.1:p.Ala196ValfsTer22
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.305delC
  hgvsp: ENSP00000464699.1:p.Ala102ValfsTer?
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*397delC
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220ValfsTer22
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AG
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

16-4847975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847975
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847975
    reference: chr 16
allele count: 1
allele frequency: 8.610742762670707e-6
allele num: 116134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.616C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.587C>T
  hgvsp: ENSP00000467509.1:p.Ala196Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.672C>T
  hgvsp: ENST00000587377.1:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*650C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1988C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.305C>T
  hgvsp: ENSP00000464699.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.659C>T
  hgvsp: ENSP00000322832.5:p.Ala220Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.344C>T
  hgvsp: ENSP00000467459.1:p.Ala115Val
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.758C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*397C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+97C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-159C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-4847975-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847975
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847975
    reference: chr 16
allele count: 4
allele frequency: 3.444297105068283e-5
allele num: 116134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.616C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.587C>G
  hgvsp: ENSP00000467509.1:p.Ala196Gly
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1988C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+97C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.344C>G
  hgvsp: ENSP00000467459.1:p.Ala115Gly
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*397C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.659C>G
  hgvsp: ENSP00000322832.5:p.Ala220Gly
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*650C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.758C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.305C>G
  hgvsp: ENSP00000464699.1:p.Ala102Gly
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.672C>G
  hgvsp: ENSP00000468343.1:p.Ser224Arg
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-159C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28686
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/16-4847976-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847976
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847976
    reference: chr 16
allele count: 1
allele frequency: 8.616084506556841e-6
allele num: 116062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+96G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.658G>T
  hgvsp: ENSP00000322832.5:p.Ala220Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.671G>T
  hgvsp: ENSP00000468343.1:p.Ser224Ile
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.615G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.586G>T
  hgvsp: ENSP00000467509.1:p.Ala196Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*649G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.757G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.304G>T
  hgvsp: ENSP00000464699.1:p.Ala102Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1987G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.343G>T
  hgvsp: ENSP00000467459.1:p.Ala115Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*396G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-160G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

16-4847976-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847976
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847976
    reference: chr 16
allele count: 12
allele frequency: 1.033930140786821e-4
allele num: 116062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.757G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1987G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*649G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.658G>A
  hgvsp: ENSP00000322832.5:p.Ala220Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.586G>A
  hgvsp: ENSP00000467509.1:p.Ala196Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.343G>A
  hgvsp: ENSP00000467459.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.304G>A
  hgvsp: ENSP00000464699.1:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+96G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.615G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.671G>A
  hgvsp: ENSP00000468343.1:p.Ser224Asn
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*396G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-160G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS

16-4847981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847981
    reference: chr 16
allele count: 3
allele frequency: 2.580378799607782e-5
allele num: 116262
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.653G>A
  hgvsp: ENSP00000322832.5:p.Arg218His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.299G>A
  hgvsp: ENSP00000464699.1:p.Arg100His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.581G>A
  hgvsp: ENSP00000467509.1:p.Arg194His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.666G>A
  hgvsp: ENST00000587377.1:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*391G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*644G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+91G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1982G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.752G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-165G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.338G>A
  hgvsp: ENSP00000467459.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.610G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg218His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-4847981-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847981
    reference: chr 16
allele count: 1
allele frequency: 8.601262665359275e-6
allele num: 116262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.299G>C
  hgvsp: ENSP00000464699.1:p.Arg100Pro
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.752G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+91G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1982G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.338G>C
  hgvsp: ENSP00000467459.1:p.Arg113Pro
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.653G>C
  hgvsp: ENSP00000322832.5:p.Arg218Pro
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.581G>C
  hgvsp: ENSP00000467509.1:p.Arg194Pro
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.666G>C
  hgvsp: ENST00000587377.1:c.666G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*644G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.610G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-165G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*391G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg218Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

16-4847983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847983
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847983
    reference: chr 16
allele count: 1
allele frequency: 8.580892069539549e-6
allele num: 116538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1980C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.336C>T
  hgvsp: ENST00000587711.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.608C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*389C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.664C>T
  hgvsp: ENSP00000468343.1:p.Pro222Ser
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.750C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.297C>T
  hgvsp: ENST00000586153.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.651C>T
  hgvsp: ENST00000322048.7:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-167C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.579C>T
  hgvsp: ENST00000591392.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+89C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*642C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro222Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-4847990-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847990
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847990
    reference: chr 16
allele count: 1
allele frequency: 8.556515786771626e-6
allele num: 116870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-174A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+82A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-2A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-2A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.646-2A>G
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-4847993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847993
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847993
    reference: chr 16
allele count: 220
allele frequency: 1.880534755701439e-3
allele num: 116988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+79C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-5C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-177C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13339
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.646-5C>T
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-4847994-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847994
    reference: chr 16
allele count: 1
allele frequency: 8.545985950399098e-6
allele num: 117014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-178C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+78C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-6C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-6C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.646-6C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-4847999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4847999
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4847999
    reference: chr 16
allele count: 10
allele frequency: 8.542627712284299e-5
allele num: 117060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-183G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+73G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-11G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-11G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28643
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-4848003-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848003
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848003
    reference: chr 16
allele count: 1
allele frequency: 8.530094172239662e-6
allele num: 117232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+69T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-187T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-15T>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-15T>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

16-4848005-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848005
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848005
    reference: chr 16
allele count: 1
allele frequency: 8.538688798948034e-6
allele num: 117114
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+67G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-17G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-189G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-17G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

16-4848007-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848007
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848007
    reference: chr 16
allele count: 1
allele frequency: 8.526457597926366e-6
allele num: 117282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+65C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-191C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-19C>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-19C>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-4848009-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848009
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848009
    reference: chr 16
allele count: 2
allele frequency: 1.705087982539899e-5
allele num: 117296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+63G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-193G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-21G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-21G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

16-4848011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848011
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848011
    reference: chr 16
allele count: 4
allele frequency: 3.412678099138299e-5
allele num: 117210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+61G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-195G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-23G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-23G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27625
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

16-4848012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848012
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848012
    reference: chr 16
allele count: 3
allele frequency: 2.557195949401616e-5
allele num: 117316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+60C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-196C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-24C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-24C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13699
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

16-4848014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848014
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848014
    reference: chr 16
allele count: 1
allele frequency: 8.526457597926366e-6
allele num: 117282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-198G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+58G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-26G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-26G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/16-4848018-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848018
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848018
    reference: chr 16
allele count: 3
allele frequency: 2.557239545152326e-5
allele num: 117314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+54G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-202G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-30G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-30G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14323
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

16-4848018-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848018
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848018
    reference: chr 16
allele count: 13
allele frequency: 1.108137136232675e-4
allele num: 117314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+54G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-202G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-30G>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-30G>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14323
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26304
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

16-4848019-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848019
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848020
    reference: chr 16
allele count: 2
allele frequency: 1.704012950498424e-5
allele num: 117370
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-204dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+52dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-32dupA
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-32dupA
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26332
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14419
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

16-4848022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848022
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848022
    reference: chr 16
allele count: 1
allele frequency: 8.518032675173342e-6
allele num: 117398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+50C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-206C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-34C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-34C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25891
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

16-4848025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848025
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848025
    reference: chr 16
allele count: 2
allele frequency: 1.704274319994546e-5
allele num: 117352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-209C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+47C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-37C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-37C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4848026-GGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848026
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848024
    reference: chr 16
allele count: 1
allele frequency: 8.518322912584971e-6
allele num: 117394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-40_*637-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-212_77-211delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+44_425+45delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-40_574-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-40_659-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-40_646-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-40_292-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-40_603-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-40_*384-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-40_1975-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-40_331-39delGC
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-40_745-39delGC
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: GGC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/16-4848028-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848028
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848028
    reference: chr 16
allele count: 3
allele frequency: 2.558417192563534e-5
allele num: 117260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-212G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+44G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-40G>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-40G>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14990
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

16-4848028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848028
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848028
    reference: chr 16
allele count: 1
allele frequency: 8.528057308545113e-6
allele num: 117260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+44G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-212G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-40G>A
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-40G>A
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-4848029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848029
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848029
    reference: chr 16
allele count: 3
allele frequency: 2.55793727937791e-5
allele num: 117282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.574-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-213C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.603-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1975-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.331-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.292-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+43C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.745-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*384-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*637-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.659-41C>T
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.646-41C>T
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

16-4848030-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848030
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848030
    reference: chr 16
allele count: 5
allele frequency: 4.261194157050572e-5
allele num: 117338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.330+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.744+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*383+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.645+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.291+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*636+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1974+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-214A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.573+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.658+42A>G
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.602+42A>G
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24759
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15029
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

16-4848032-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4848032
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4848032
    reference: chr 16
allele count: 1
allele frequency: 8.523550570225534e-6
allele num: 117322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465076
  ensembl transcript: ENST00000586504
  gene symbol: ROGDI
  hgvsc: ENST00000586504.1:c.425+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000466529
  ensembl transcript: ENST00000588201
  gene symbol: ROGDI
  hgvsc: ENST00000588201.1:c.*636+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468334
  ensembl transcript: ENST00000592019
  gene symbol: ROGDI
  hgvsc: ENST00000592019.1:c.77-216A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000322832
  ensembl transcript: ENST00000322048
  gene symbol: ROGDI
  hgvsc: ENST00000322048.7:c.645+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000586336
  gene symbol: ROGDI
  hgvsc: ENST00000586336.1:n.744+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467509
  ensembl transcript: ENST00000591392
  gene symbol: ROGDI
  hgvsc: ENST00000591392.1:c.573+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000589543
  gene symbol: ROGDI
  hgvsc: ENST00000589543.1:n.602+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl transcript: ENST00000591292
  gene symbol: ROGDI
  hgvsc: ENST00000591292.1:n.1974+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000468343
  ensembl transcript: ENST00000587377
  gene symbol: ROGDI
  hgvsc: ENST00000587377.1:c.658+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000464699
  ensembl transcript: ENST00000586153
  gene symbol: ROGDI
  hgvsc: ENST00000586153.1:c.291+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000465970
  ensembl transcript: ENST00000587843
  gene symbol: ROGDI
  hgvsc: ENST00000587843.1:c.*383+40A>C
  variant of: http://identifiers.org/hgnc/29478
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067836
  ensembl protein: ENSP00000467459
  ensembl transcript: ENST00000587711
  gene symbol: ROGDI
  hgvsc: ENST00000587711.1:c.330+40A>C
  variant of: http://identifiers.org/hgnc/29478
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

16-88788202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788202
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788202
    reference: chr 16
allele count: 6
allele frequency: 5.561735261401557e-4
allele num: 10788
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5214+14G>A
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 734
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 5
  allele frequency: 8.085381630012937e-4
  allele num: 6184
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 196
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

16-88788208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788208
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788208
    reference: chr 16
allele count: 3
allele frequency: 2.542803865061875e-4
allele num: 11798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5214+8G>A
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2101
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genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 396
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genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 98
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 27
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2838
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
hgvs: c.5214+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 5.31632110579479e-4
  allele num: 3762
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

16-88788209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788209
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788209
    reference: chr 16
allele count: 4
allele frequency: 3.360779700890607e-4
allele num: 11902
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5214+7C>T
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2602
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 439
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
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genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 100
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genotype quality: GenotypeQuality
  all individuals: 561
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 101
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genotype quality: GenotypeQuality
  all individuals: 2839
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32
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  variant carriers: 0
hgvs: c.5214+7C>T
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6718
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 216
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-88788230-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788230
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788230
    reference: chr 16
allele count: 2
allele frequency: 1.401541695865452e-4
allele num: 14270
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5200A>G
  hgvsp: ENSP00000301015.9:p.Ile1734Val
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2361
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 253
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 104
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
hgvs: p.Ile1734Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 142
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1154
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

16-88788234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788234
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788234
    reference: chr 16
allele count: 3
allele frequency: 2.054231717337716e-4
allele num: 14604
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5196G>A
  hgvsp: ENST00000301015.9:c.5196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
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genotype depth: GenotypeDepth
  all individuals: 589
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr1732Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7612
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 282
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-88788235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788235
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788235
    reference: chr 16
allele count: 335
allele frequency: 2.274579033134166e-2
allele num: 14728
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5195C>T
  hgvsp: ENSP00000301015.9:p.Thr1732Met
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.75e1
  variant carriers: 314
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4781
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Thr1732Met
num of homozygotes: 13
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 286
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 5
  allele frequency: 2.380952380952381e-2
  allele num: 210
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

16-88788248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788248
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788248
    reference: chr 16
allele count: 1
allele frequency: 6.390593047034765e-5
allele num: 15648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5182C>T
  hgvsp: ENSP00000301015.9:p.Arg1728Cys
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg1728Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.291322314049587e-4
  allele num: 7744
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 232
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-88788249-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788249
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788249
    reference: chr 16
allele count: 1
allele frequency: 6.364562118126272e-5
allele num: 15712
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5181G>A
  hgvsp: ENST00000301015.9:c.5181G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys1727Lys
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 336
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 234
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

16-88788264-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788264
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788264
    reference: chr 16
allele count: 1
allele frequency: 6.00817111271329e-5
allele num: 16644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5166C>G
  hgvsp: ENSP00000301015.9:p.Ile1722Met
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile1722Met
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 162
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 400
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/16-88788267-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788267
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788267
    reference: chr 16
allele count: 1
allele frequency: 5.950964056177101e-5
allele num: 16804
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5163G>T
  hgvsp: ENST00000301015.9:c.5163G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser1721Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6468
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 34
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-88788267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788267
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788267
    reference: chr 16
allele count: 2
allele frequency: 1.19019281123542e-4
allele num: 16804
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5163G>A
  hgvsp: ENST00000301015.9:c.5163G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 6031
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
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genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 100
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genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 29
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genotype quality: GenotypeQuality
  all individuals: 50
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genotype quality: GenotypeQuality
  all individuals: 59
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1721Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.546072974644403e-4
  allele num: 6468
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 34
  num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/16-88788282-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788282
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788282
    reference: chr 16
allele count: 4
allele frequency: 2.29858636938283e-4
allele num: 17402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5148G>T
  hgvsp: ENST00000301015.9:c.5148G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3351
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 266
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genotype quality: GenotypeQuality
  all individuals: 1119
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 329
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 134
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  variant carriers: 0
hgvs: p.Leu1716Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1786
  num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

16-88788290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788290
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788290
    reference: chr 16
allele count: 1
allele frequency: 5.701904436081651e-5
allele num: 17538
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5140G>A
  hgvsp: ENSP00000301015.9:p.Val1714Ile
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 271
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val1714Ile
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1806
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 170
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

16-88788291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788291
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788291
    reference: chr 16
allele count: 31
allele frequency: 1.763166875213286e-3
allele num: 17582
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5139C>T
  hgvsp: ENST00000301015.9:c.5139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu1713Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 312
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 10
  allele frequency: 1.273236567354214e-3
  allele num: 7854
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-88788295-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788295
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788295
    reference: chr 16
allele count: 1
allele frequency: 5.668934240362812e-5
allele num: 17640
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5135T>G
  hgvsp: ENSP00000301015.9:p.Val1712Gly
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val1712Gly
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 2.155172413793103e-3
  allele num: 464
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 170
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

16-88788296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788296
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788296
    reference: chr 16
allele count: 1
allele frequency: 5.667006687067891e-5
allele num: 17646
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5134G>A
  hgvsp: ENSP00000301015.9:p.Val1712Met
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val1712Met
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6970
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1818
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-88788296-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788296
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788296
    reference: chr 16
allele count: 1
allele frequency: 5.667006687067891e-5
allele num: 17646
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5134G>C
  hgvsp: ENSP00000301015.9:p.Val1712Leu
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val1712Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 464
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1818
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-88788297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788297
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788297
    reference: chr 16
allele count: 4
allele frequency: 2.258355916892502e-4
allele num: 17712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5133C>T
  hgvsp: ENST00000301015.9:c.5133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro1711Pro
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 2.54323499491353e-4
  allele num: 7864
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 474
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

16-88788309-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788309
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788309
    reference: chr 16
allele count: 137
allele frequency: 7.719179625873338e-3
allele num: 17748
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5121G>C
  hgvsp: ENST00000301015.9:c.5121G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 5857
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1707Ser
num of homozygotes: 6
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7016
  num of homozygotes: 0
population: African
  type: Population
  allele count: 135
  allele frequency: 7.352941176470588e-2
  allele num: 1836
  num of homozygotes: 6
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

16-88788314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788314
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788314
    reference: chr 16
allele count: 1
allele frequency: 5.595970900951315e-5
allele num: 17870
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5116G>A
  hgvsp: ENSP00000301015.9:p.Gly1706Ser
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly1706Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 172
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 334
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

16-88788315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788315
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788315
    reference: chr 16
allele count: 5
allele frequency: 2.787378749024418e-4
allele num: 17938
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5115C>T
  hgvsp: ENST00000301015.9:c.5115C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1705Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 174
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1872
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

16-88788318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788318
    reference: chr 16
allele count: 1
allele frequency: 5.538938739337543e-5
allele num: 18054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5112C>T
  hgvsp: ENST00000301015.9:c.5112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1704Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1900
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 174
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-88788324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788324
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788324
    reference: chr 16
allele count: 14
allele frequency: 7.720304400573508e-4
allele num: 18134
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5106G>A
  hgvsp: ENST00000301015.9:c.5106G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1702Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 498
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7234
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-88788325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788325
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788325
    reference: chr 16
allele count: 2
allele frequency: 1.102414287289163e-4
allele num: 18142
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5105C>T
  hgvsp: ENSP00000301015.9:p.Thr1702Met
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr1702Met
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 498
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7238
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-88788330-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788330
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788330
    reference: chr 16
allele count: 1
allele frequency: 5.486065393899495e-5
allele num: 18228
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5100G>C
  hgvsp: ENSP00000301015.9:p.Met1700Ile
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met1700Ile
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 174
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.267427122940431e-4
  allele num: 7890
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

16-88788335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88788335
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88788335
    reference: chr 16
allele count: 1
allele frequency: 5.48305735277991e-5
allele num: 18238
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103335
  ensembl protein: ENSP00000301015
  ensembl transcript: ENST00000301015
  gene symbol: PIEZO1
  hgvsc: ENST00000301015.9:c.5095C>T
  hgvsp: ENSP00000301015.9:p.His1699Tyr
  variant of: http://identifiers.org/hgnc/28993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His1699Tyr
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1595
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012350678274954e-4
allele num: 9878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.309e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.26e-1

DP
type: SiteQuality
SIO_000300: 1.546664e6

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28561
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1584
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14336
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.748557440111908e-4
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64046
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.547081e6

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

FS
type: SiteQuality
SIO_000300: 6.18e-1

GenotypeDepth
all individuals: 1676
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2494
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3973
bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56137775973519e-5
allele num: 64046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14336
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

FS
type: SiteQuality
SIO_000300: 6.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.13e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.547081e6

GenotypeDepth
all individuals: 245
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 579
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.039587962027873e-4
allele num: 9902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 1.54629e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

GenotypeDepth
all individuals: 1723
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2344
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variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.5e0
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GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 310
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variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 3

GenotypeQuality
all individuals: 270
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8857
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variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.092342028176873e-4
allele num: 14338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.545896e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.391e1

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

GenotypeDepth
all individuals: 28568
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 10699
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variant carriers: 2

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 37113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
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variant carriers: 0

GenotypeQuality
all individuals: 4033
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 695
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1833
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
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variant carriers: 39

GenotypeQuality
all individuals: 2340
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561182752052955e-5
allele num: 64054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.777777777777778e-3
allele num: 14400
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 1.788e0

DP
type: SiteQuality
SIO_000300: 1.545354e6

QD
type: SiteQuality
SIO_000300: 1.509e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 1130
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GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
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GenotypeQuality
all individuals: 8848
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 1.75e1
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GenotypeQuality
all individuals: 2339
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 5.75e1
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GenotypeQuality
all individuals: 4036
bin: 2.25e1
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GenotypeQuality
all individuals: 251
bin: 8.75e1
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GenotypeQuality
all individuals: 1832
bin: 7.75e1
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GenotypeQuality
all individuals: 417
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 764
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variant carriers: 0

GenotypeQuality
all individuals: 37119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.36885169107773e-5
allele num: 64042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 2.789e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

DP
type: SiteQuality
SIO_000300: 1.544775e6

GenotypeDepth
all individuals: 57
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variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
all individuals: 10671
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variant carriers: 0

GenotypeQuality
all individuals: 1830
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GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 1124
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GenotypeQuality
all individuals: 3958
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GenotypeQuality
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GenotypeQuality
all individuals: 411
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variant carriers: 2

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 280
bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 761
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GenotypeQuality
all individuals: 1211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 373
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GenotypeQuality
all individuals: 36887
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 374
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GenotypeQuality
all individuals: 2329
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GenotypeQuality
all individuals: 721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8793
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.123828564288392e-5
allele num: 64024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

QD
type: SiteQuality
SIO_000300: 1.387e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.722e0

DP
type: SiteQuality
SIO_000300: 1.54449e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 543
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variant carriers: 1

GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 1173
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GenotypeQuality
all individuals: 248
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GenotypeQuality
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GenotypeQuality
all individuals: 37091
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GenotypeQuality
all individuals: 78
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GenotypeQuality
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GenotypeQuality
all individuals: 8799
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GenotypeQuality
all individuals: 347
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GenotypeQuality
all individuals: 752
bin: 8.25e1
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GenotypeQuality
all individuals: 1828
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variant carriers: 0

GenotypeQuality
all individuals: 3929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
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variant carriers: 0

GenotypeQuality
all individuals: 408
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variant carriers: 1

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.941552131056504e-5
allele num: 14406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.545124e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.636e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

QD
type: SiteQuality
SIO_000300: 7.94e0

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560695445890689e-5
allele num: 64074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.002e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
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SIO_000300: 8.77e-1

MQRankSum
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SIO_000300: 2.14e0

BaseQRankSum
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SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.546177e6

FS
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
type: SiteQuality
SIO_000300: -6.282e-1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 411
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3920
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64036
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.021678040947411e-4
allele num: 9964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.752e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 1.546816e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeDepth
all individuals: 1524
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 534
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variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 256
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559575795383656e-5
allele num: 64120
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 1.547981e6

QD
type: SiteQuality
SIO_000300: 1.182e1

FS
type: SiteQuality
SIO_000300: 3.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeDepth
all individuals: 35
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variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
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variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.87757909215956e-5
allele num: 14540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.011263073209976e-4
allele num: 9944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.033e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.182e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 1804
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.838074398249453e-5
allele num: 14624
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.004621257785815e-4
allele num: 9954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.225e0

QD
type: SiteQuality
SIO_000300: 1.064e1

DP
type: SiteQuality
SIO_000300: 1.549064e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64202
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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ClippingRankSum
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MQRankSum
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DP
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FS
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.556662515566625e-5
allele num: 64240
num of homozygotes: 0

FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

Latino
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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FS
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QD
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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allele frequency: 3.007217321571772e-4
allele num: 9976
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.743088334457182e-5
allele num: 14830
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64238
num of homozygotes: 0

East Asian
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Other
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num of homozygotes: 0

DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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MQ
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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Latino
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African
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allele frequency: 9.028892455858748e-4
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European (Non-Finnish)
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allele frequency: 4.67013294311778e-5
allele num: 64238
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQ
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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FS
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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MQ
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64350
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
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FS
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DP
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.705e0

ReadPosRankSum
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SIO_000300: 1.06e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.462453147214683e-5
allele num: 15474
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10012
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64420
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.555999999999999e0

ReadPosRankSum
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MQ
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SIO_000300: 5.906e1

ClippingRankSum
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SIO_000300: -8.67e-1

QD
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 1.2e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 25

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 216

GenotypeQuality
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GenotypeQuality
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African
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allele count: 213
allele frequency: 2.128297362110312e-2
allele num: 10008
num of homozygotes: 1

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551301541993733e-5
allele num: 64462
num of homozygotes: 0

Latino
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allele frequency: 5.270555165144061e-4
allele num: 11384
num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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SIO_000300: -4.09e-1

VQSLOD
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ClippingRankSum
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QD
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DP
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MQRankSum
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FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.969e1

ReadPosRankSum
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SIO_000300: 4.1e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64470
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -6.23e-1

InbreedingCoeff
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SIO_000300: -8.0e-4

ReadPosRankSum
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SIO_000300: 8.58e-1

MQRankSum
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QD
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FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 4.67e0

ClippingRankSum
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SIO_000300: -2.052e0

DP
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.639344262295082e-4
allele num: 6100
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10004
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.395695056137957e-4
allele num: 64484
num of homozygotes: 0

Other
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allele num: 840
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FS
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SIO_000300: 2.49e0

MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.549666821633349e-5
allele num: 64530
num of homozygotes: 0

South Asian
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.253908692933083e-5
allele num: 15990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.01e0

FS
type: SiteQuality
SIO_000300: 5.201e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

DP
type: SiteQuality
SIO_000300: 1.542761e6

VQSLOD
type: SiteQuality
SIO_000300: -1.627e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQ
type: SiteQuality
SIO_000300: 5.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.829e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeDepth
all individuals: 29
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1663
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 962
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37466
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.761493746697199e-4
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.540191e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

FS
type: SiteQuality
SIO_000300: 6.995e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1227
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GenotypeQuality
all individuals: 1636
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.011443485243927e-4
allele num: 9962
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.218905472636816e-5
allele num: 16080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 5.756e0

DP
type: SiteQuality
SIO_000300: 1.539691e6

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 1623
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variant carriers: 0

GenotypeQuality
all individuals: 8378
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 532
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GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.004621257785815e-4
allele num: 9954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550724188195888e-5
allele num: 64486
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.198859409868585e-5
allele num: 16132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.533591e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 1.333e1

FS
type: SiteQuality
SIO_000300: 4.976e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeDepth
all individuals: 49
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variant carriers: 0

GenotypeDepth
all individuals: 198
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 666
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GenotypeQuality
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GenotypeQuality
all individuals: 636
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GenotypeQuality
all individuals: 188
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

ClippingRankSum
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SIO_000300: -4.84e-1

DP
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SIO_000300: 1.520532e6

MQRankSum
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SIO_000300: 4.05e-1

BaseQRankSum
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SIO_000300: -4.248e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.84e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 712
bin: 4.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.165228113440197e-5
allele num: 16220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.101448376391775e-5
allele num: 64486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ClippingRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
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SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.513922e6

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 3.189e0

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
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Latino
type: Population
allele count: 1
allele frequency: 8.843296781039972e-5
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 12
allele frequency: 1.20627261761158e-3
allele num: 9948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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SIO_000300: 1.97e-1

BaseQRankSum
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SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 1516
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 907
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GenotypeQuality
all individuals: 333
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variant carriers: 2

Latino
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allele count: 0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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African
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DP
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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Latino
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South Asian
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European (Finnish)
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African
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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MQ
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FS
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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Other
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European (Non-Finnish)
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allele num: 64480
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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VQSLOD
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MQ
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FS
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ClippingRankSum
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SIO_000300: -1.57e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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allele num: 16336
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European (Finnish)
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Other
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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QD
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BaseQRankSum
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FS
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

East Asian
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allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
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South Asian
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Latino
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Other
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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African
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East Asian
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Latino
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European (Finnish)
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 64430
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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Other
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MQRankSum
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.005025125628141e-4
allele num: 9950
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.223091976516634e-4
allele num: 16352
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.847991505928154e-5
allele num: 11302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.122e0

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

DP
type: SiteQuality
SIO_000300: 1.480459e6

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

GenotypeDepth
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.039e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 1.824e0

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

DP
type: SiteQuality
SIO_000300: 1.473213e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

Latino
type: Population
allele count: 1
allele frequency: 6.578947368421052e-3
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

FS
type: SiteQuality
SIO_000300: 3.721e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

DP
type: SiteQuality
SIO_000300: 1.31114e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.493428912783751e-4
allele num: 6696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

DP
type: SiteQuality
SIO_000300: 1.39496e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 4
allele frequency: 4.576659038901602e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

DP
type: SiteQuality
SIO_000300: 1.42498e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -2.871e0

QD
type: SiteQuality
SIO_000300: 2.943e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.644802962179318e-4
allele num: 7562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.165e1

DP
type: SiteQuality
SIO_000300: 1.86608e5

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.857087075361187e-4
allele num: 5122
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 1.92244e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

South Asian
type: Population
allele count: 269
allele frequency: 3.525557011795544e-2
allele num: 7630
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 1.055257099002302e-2
allele num: 5212
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.623376623376623e-3
allele num: 1232
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 2.702702702702703e-2
allele num: 148
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

QD
type: SiteQuality
SIO_000300: 1.438e1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.98821e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 3.169e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.07963e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.727115716753022e-4
allele num: 5790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.9e0

DP
type: SiteQuality
SIO_000300: 2.08653e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.106e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569365976145637e-4
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.796e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.20126e5

South Asian
type: Population
allele count: 1
allele frequency: 1.282709081580298e-4
allele num: 7796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

DP
type: SiteQuality
SIO_000300: 2.21989e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

QD
type: SiteQuality
SIO_000300: 1.303e1

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.427184466019417e-3
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.21989e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.875440658049354e-4
allele num: 6808
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

DP
type: SiteQuality
SIO_000300: 2.27887e5

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.273885350318471e-4
allele num: 7850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.506e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 8.166e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

QD
type: SiteQuality
SIO_000300: 1.483e1

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

DP
type: SiteQuality
SIO_000300: 2.29166e5

VQSLOD
type: SiteQuality
SIO_000300: -1.034e0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.742494226327945e-3
allele num: 6928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.183406113537118e-3
allele num: 458
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.518763796909492e-4
allele num: 1812
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

QD
type: SiteQuality
SIO_000300: 1.352e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

DP
type: SiteQuality
SIO_000300: 2.3198e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.30511e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

FS
type: SiteQuality
SIO_000300: 7.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

MQRankSum
type: SiteQuality
SIO_000300: -1.539e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.272912423625254e-4
allele num: 7856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.671e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.77e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

DP
type: SiteQuality
SIO_000300: 2.30845e5

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.272912423625254e-4
allele num: 7856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.228e1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 4.671e0

DP
type: SiteQuality
SIO_000300: 2.30845e5

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.857142857142857e-4
allele num: 7000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.3169e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

FS
type: SiteQuality
SIO_000300: 1.209e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.097560975609756e-3
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.36309e5

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.121e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.408847562693716e-4
allele num: 7098
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.34907e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.374e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.159e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

South Asian
type: Population
allele count: 5
allele frequency: 6.353240152477764e-4
allele num: 7870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.36079e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.17e-2

QD
type: SiteQuality
SIO_000300: 1.183e1

VQSLOD
type: SiteQuality
SIO_000300: -3.992e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

FS
type: SiteQuality
SIO_000300: 2.665e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.388888888888889e-4
allele num: 7200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

QD
type: SiteQuality
SIO_000300: 1.209e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.738e0

DP
type: SiteQuality
SIO_000300: 2.36454e5

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.776649746192893e-3
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

DP
type: SiteQuality
SIO_000300: 2.39624e5

FS
type: SiteQuality
SIO_000300: 1.127e0

QD
type: SiteQuality
SIO_000300: 1.283e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.036269430051813e-3
allele num: 1930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

DP
type: SiteQuality
SIO_000300: 2.38611e5

FS
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.533e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.452e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 2.40292e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.126e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 2.904e0

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e0