17-41959772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959772
    reference: chr 17
allele count: 2
allele frequency: 1.653904040487571e-5
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.612G>A
  hgvsp: ENST00000377184.3:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.696G>A
  hgvsp: ENST00000518766.1:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.144G>A
  hgvsp: ENST00000520305.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.633G>A
  hgvsp: ENST00000461854.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.528G>A
  hgvsp: ENST00000523501.1:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.510G>A
  hgvsp: ENST00000523220.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.561G>A
  hgvsp: ENST00000269095.4:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.528G>A
  hgvsp: ENST00000536246.1:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.811G>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45794
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu187Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-41959774-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959774
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959771
    reference: chr 17
allele count: 2
allele frequency: 1.653958750268768e-5
allele num: 120922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.691_693delAAG
  hgvsp: ENSP00000428182.1:p.Lys231del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.139_141delAAG
  hgvsp: ENSP00000428136.1:p.Lys47del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.556_558delAAG
  hgvsp: ENSP00000269095.4:p.Lys186del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.607_609delAAG
  hgvsp: ENSP00000366389.3:p.Lys203del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.505_507delAAG
  hgvsp: ENSP00000428468.1:p.Lys169del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.806_808delAAG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.523_525delAAG
  hgvsp: ENSP00000438012.1:p.Lys175del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.523_525delAAG
  hgvsp: ENSP00000430540.1:p.Lys175del
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.628_630delAAG
  hgvsp: ENSP00000428286.1:p.Lys210del
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys186del
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CCTT
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

17-41959781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959781
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959781
    reference: chr 17
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.519C>T
  hgvsp: ENST00000536246.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.687C>T
  hgvsp: ENST00000518766.1:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.519C>T
  hgvsp: ENST00000523501.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.603C>T
  hgvsp: ENST00000377184.3:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.552C>T
  hgvsp: ENST00000269095.4:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.501C>T
  hgvsp: ENST00000523220.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.135C>T
  hgvsp: ENST00000520305.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.624C>T
  hgvsp: ENST00000461854.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.802C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile184Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

17-41959782-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959782
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959782
    reference: chr 17
allele count: 1
allele frequency: 8.268973158913126e-6
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.686T>A
  hgvsp: ENSP00000428182.1:p.Ile229Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.602T>A
  hgvsp: ENSP00000366389.3:p.Ile201Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.518T>A
  hgvsp: ENSP00000438012.1:p.Ile173Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.801T>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.500T>A
  hgvsp: ENSP00000428468.1:p.Ile167Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.551T>A
  hgvsp: ENSP00000269095.4:p.Ile184Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.134T>A
  hgvsp: ENSP00000428136.1:p.Ile45Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.623T>A
  hgvsp: ENSP00000428286.1:p.Ile208Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.518T>A
  hgvsp: ENSP00000430540.1:p.Ile173Asn
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile184Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-41959793-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959793
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959793
    reference: chr 17
allele count: 2
allele frequency: 1.653493832468005e-5
allele num: 120956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.591T>C
  hgvsp: ENST00000377184.3:c.591T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.612T>C
  hgvsp: ENST00000461854.1:c.612T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.675T>C
  hgvsp: ENST00000518766.1:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.507T>C
  hgvsp: ENST00000536246.1:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.123T>C
  hgvsp: ENST00000520305.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.489T>C
  hgvsp: ENST00000523220.1:c.489T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.540T>C
  hgvsp: ENST00000269095.4:c.540T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.790T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.507T>C
  hgvsp: ENST00000523501.1:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His180His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

17-41959795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959795
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959795
    reference: chr 17
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.487C>T
  hgvsp: ENSP00000428468.1:p.His163Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.505C>T
  hgvsp: ENSP00000438012.1:p.His169Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.538C>T
  hgvsp: ENSP00000269095.4:p.His180Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.121C>T
  hgvsp: ENSP00000428136.1:p.His41Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.505C>T
  hgvsp: ENSP00000430540.1:p.His169Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.589C>T
  hgvsp: ENSP00000366389.3:p.His197Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.788C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.673C>T
  hgvsp: ENSP00000428182.1:p.His225Tyr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.610C>T
  hgvsp: ENSP00000428286.1:p.His204Tyr
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His180Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

17-41959808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959808
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959808
    reference: chr 17
allele count: 107934
allele frequency: 8.90779743826753e-1
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.597A>G
  hgvsp: ENST00000461854.1:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.525A>G
  hgvsp: ENST00000269095.4:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.775A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.576A>G
  hgvsp: ENST00000377184.3:c.576A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.492A>G
  hgvsp: ENST00000523501.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.492A>G
  hgvsp: ENST00000536246.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.108A>G
  hgvsp: ENST00000520305.1:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.474A>G
  hgvsp: ENST00000523220.1:c.474A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.660A>G
  hgvsp: ENST00000518766.1:c.660A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.75e1
  variant carriers: 1391
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 8.75e1
  variant carriers: 3884
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 1778
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 6.75e1
  variant carriers: 2910
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.25e1
  variant carriers: 444
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.75e1
  variant carriers: 651
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 5.75e1
  variant carriers: 2053
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 1020
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 9.25e1
  variant carriers: 3757
genotype depth: GenotypeDepth
  all individuals: 26189
  bin: 9.75e1
  variant carriers: 26188
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.25e1
  variant carriers: 2507
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 1195
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 8.25e1
  variant carriers: 3795
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.25e1
  variant carriers: 820
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 7.25e1
  variant carriers: 3180
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 7.75e1
  variant carriers: 3563
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 19
hgvs: p.Gln175Gln
num of homozygotes: 48204
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

17-41959821-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959821
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959821
    reference: chr 17
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.479G>C
  hgvsp: ENSP00000430540.1:p.Gly160Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.792G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.584G>C
  hgvsp: ENSP00000428286.1:p.Gly195Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.95G>C
  hgvsp: ENSP00000428136.1:p.Gly32Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.563G>C
  hgvsp: ENSP00000366389.3:p.Gly188Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.461G>C
  hgvsp: ENSP00000428468.1:p.Gly154Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.647G>C
  hgvsp: ENSP00000428182.1:p.Gly216Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.512G>C
  hgvsp: ENSP00000269095.4:p.Gly171Ala
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.762G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.479G>C
  hgvsp: ENSP00000438012.1:p.Gly160Ala
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly171Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-41959836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959836
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959836
    reference: chr 17
allele count: 1
allele frequency: 8.301648707433296e-6
allele num: 120458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.548G>A
  hgvsp: ENSP00000366389.3:p.Arg183His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.777G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.446G>A
  hgvsp: ENSP00000428468.1:p.Arg149His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.80G>A
  hgvsp: ENSP00000428136.1:p.Arg27His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.632G>A
  hgvsp: ENSP00000428182.1:p.Arg211His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.569G>A
  hgvsp: ENSP00000428286.1:p.Arg190His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.747G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.497G>A
  hgvsp: ENSP00000269095.4:p.Arg166His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.464G>A
  hgvsp: ENSP00000430540.1:p.Arg155His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.464G>A
  hgvsp: ENSP00000438012.1:p.Arg155His
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg166His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-41959837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959837
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959837
    reference: chr 17
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.547C>T
  hgvsp: ENSP00000366389.3:p.Arg183Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.776C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.445C>T
  hgvsp: ENSP00000428468.1:p.Arg149Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.496C>T
  hgvsp: ENSP00000269095.4:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.568C>T
  hgvsp: ENSP00000428286.1:p.Arg190Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.746C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.631C>T
  hgvsp: ENSP00000428182.1:p.Arg211Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.463C>T
  hgvsp: ENSP00000438012.1:p.Arg155Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.79C>T
  hgvsp: ENSP00000428136.1:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.463C>T
  hgvsp: ENSP00000430540.1:p.Arg155Cys
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg166Cys
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

17-41959839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959839
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959839
    reference: chr 17
allele count: 2
allele frequency: 1.661681621801263e-5
allele num: 120360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.461C>T
  hgvsp: ENSP00000438012.1:p.Ala154Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.774C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.566C>T
  hgvsp: ENSP00000428286.1:p.Ala189Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.744C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.443C>T
  hgvsp: ENSP00000428468.1:p.Ala148Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.629C>T
  hgvsp: ENSP00000428182.1:p.Ala210Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.77C>T
  hgvsp: ENSP00000428136.1:p.Ala26Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.494C>T
  hgvsp: ENSP00000269095.4:p.Ala165Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.545C>T
  hgvsp: ENSP00000366389.3:p.Ala182Val
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.461C>T
  hgvsp: ENSP00000430540.1:p.Ala154Val
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala165Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-41959841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959841
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959841
    reference: chr 17
allele count: 5
allele frequency: 4.154342118382133e-5
allele num: 120356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.441C>T
  hgvsp: ENST00000523220.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.742C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.492C>T
  hgvsp: ENST00000269095.4:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.75C>T
  hgvsp: ENST00000520305.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.627C>T
  hgvsp: ENST00000518766.1:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.543C>T
  hgvsp: ENST00000377184.3:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.459C>T
  hgvsp: ENST00000536246.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.564C>T
  hgvsp: ENST00000461854.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.459C>T
  hgvsp: ENST00000523501.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.772C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Ile164Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

17-41959841-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959841
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959841
    reference: chr 17
allele count: 2
allele frequency: 1.661736847352853e-5
allele num: 120356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.75C>G
  hgvsp: ENSP00000428136.1:p.Ile25Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.627C>G
  hgvsp: ENSP00000428182.1:p.Ile209Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.772C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.459C>G
  hgvsp: ENSP00000430540.1:p.Ile153Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.564C>G
  hgvsp: ENSP00000428286.1:p.Ile188Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.742C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.459C>G
  hgvsp: ENSP00000438012.1:p.Ile153Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.441C>G
  hgvsp: ENSP00000428468.1:p.Ile147Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.492C>G
  hgvsp: ENSP00000269095.4:p.Ile164Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.543C>G
  hgvsp: ENSP00000366389.3:p.Ile181Met
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32144
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile164Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-41959841-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959841
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959841
    reference: chr 17
allele count: 2
allele frequency: 1.661736847352853e-5
allele num: 120356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.543C>A
  hgvsp: ENST00000377184.3:c.543C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.627C>A
  hgvsp: ENST00000518766.1:c.627C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.564C>A
  hgvsp: ENST00000461854.1:c.564C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.459C>A
  hgvsp: ENST00000523501.1:c.459C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.492C>A
  hgvsp: ENST00000269095.4:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.459C>A
  hgvsp: ENST00000536246.1:c.459C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.441C>A
  hgvsp: ENST00000523220.1:c.441C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.742C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.75C>A
  hgvsp: ENST00000520305.1:c.75C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.772C>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile164Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

17-41959850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959850
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959850
    reference: chr 17
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.450G>A
  hgvsp: ENST00000523501.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.66G>A
  hgvsp: ENST00000520305.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.555G>A
  hgvsp: ENST00000461854.1:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.483G>A
  hgvsp: ENST00000269095.4:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.763G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.618G>A
  hgvsp: ENST00000518766.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.450G>A
  hgvsp: ENST00000536246.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.534G>A
  hgvsp: ENST00000377184.3:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.733G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.432G>A
  hgvsp: ENST00000523220.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu161Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-41959853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959853
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959853
    reference: chr 17
allele count: 2
allele frequency: 1.670341417785795e-5
allele num: 119736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.730C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.615C>T
  hgvsp: ENST00000518766.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.63C>T
  hgvsp: ENST00000520305.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.447C>T
  hgvsp: ENST00000536246.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.760C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.429C>T
  hgvsp: ENST00000523220.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.480C>T
  hgvsp: ENST00000269095.4:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.531C>T
  hgvsp: ENST00000377184.3:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.552C>T
  hgvsp: ENST00000461854.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.447C>T
  hgvsp: ENST00000523501.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly160Gly
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-41959855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959855
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959855
    reference: chr 17
allele count: 2
allele frequency: 1.670732114812711e-5
allele num: 119708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.445G>A
  hgvsp: ENSP00000430540.1:p.Gly149Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.478G>A
  hgvsp: ENSP00000269095.4:p.Gly160Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.758G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.529G>A
  hgvsp: ENSP00000366389.3:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.728G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.613G>A
  hgvsp: ENSP00000428182.1:p.Gly205Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.427G>A
  hgvsp: ENSP00000428468.1:p.Gly143Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.550G>A
  hgvsp: ENSP00000428286.1:p.Gly184Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.445G>A
  hgvsp: ENSP00000438012.1:p.Gly149Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.61G>A
  hgvsp: ENSP00000428136.1:p.Gly21Ser
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly160Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

17-41959856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959856
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959856
    reference: chr 17
allele count: 1
allele frequency: 8.356452852893003e-6
allele num: 119668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.549C>T
  hgvsp: ENST00000461854.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.444C>T
  hgvsp: ENST00000536246.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.727C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.757C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.60C>T
  hgvsp: ENST00000520305.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.426C>T
  hgvsp: ENST00000523220.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.444C>T
  hgvsp: ENST00000523501.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.477C>T
  hgvsp: ENST00000269095.4:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.612C>T
  hgvsp: ENST00000518766.1:c.612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.528C>T
  hgvsp: ENST00000377184.3:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly159Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

17-41959862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959862
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959862
    reference: chr 17
allele count: 389
allele frequency: 3.259867594066873e-3
allele num: 119330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.751G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.54G>A
  hgvsp: ENST00000520305.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.721G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.438G>A
  hgvsp: ENST00000536246.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.522G>A
  hgvsp: ENST00000377184.3:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.543G>A
  hgvsp: ENST00000461854.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.471G>A
  hgvsp: ENST00000269095.4:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.606G>A
  hgvsp: ENST00000518766.1:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.438G>A
  hgvsp: ENST00000523501.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.420G>A
  hgvsp: ENST00000523220.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 13181
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 10030
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 31670
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val157Val
num of homozygotes: 7
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-41959871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959871
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959871
    reference: chr 17
allele count: 1
allele frequency: 8.416799932665601e-6
allele num: 118810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.712G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.597G>A
  hgvsp: ENST00000518766.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.429G>A
  hgvsp: ENST00000523501.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.462G>A
  hgvsp: ENST00000269095.4:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.534G>A
  hgvsp: ENST00000461854.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.513G>A
  hgvsp: ENST00000377184.3:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.429G>A
  hgvsp: ENST00000536246.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.45G>A
  hgvsp: ENST00000520305.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.742G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.411G>A
  hgvsp: ENST00000523220.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr154Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

17-41959872-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959872
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959872
    reference: chr 17
allele count: 3
allele frequency: 2.529468305762129e-5
allele num: 118602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.44C>G
  hgvsp: ENSP00000428136.1:p.Thr15Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.533C>G
  hgvsp: ENSP00000428286.1:p.Thr178Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.596C>G
  hgvsp: ENSP00000428182.1:p.Thr199Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.428C>G
  hgvsp: ENSP00000438012.1:p.Thr143Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.711C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.428C>G
  hgvsp: ENSP00000430540.1:p.Thr143Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.410C>G
  hgvsp: ENSP00000428468.1:p.Thr137Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.461C>G
  hgvsp: ENSP00000269095.4:p.Thr154Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.512C>G
  hgvsp: ENSP00000366389.3:p.Thr171Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.741C>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr154Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-41959883-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959883
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959883
    reference: chr 17
allele count: 1
allele frequency: 8.536793580331227e-6
allele num: 117140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-4C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-4C>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
hgvs: c.454-4C>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-41959890-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959890
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959890
    reference: chr 17
allele count: 1
allele frequency: 8.615342201392239e-6
allele num: 116072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-11C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-11C>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-41959892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959892
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959892
    reference: chr 17
allele count: 1
allele frequency: 8.655760408551892e-6
allele num: 115530
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-13C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-41959892-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959892
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959892
    reference: chr 17
allele count: 4
allele frequency: 3.462304163420757e-5
allele num: 115530
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-13C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-13C>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27757
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-41959896-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959896
    reference: chr 17
allele count: 3
allele frequency: 2.61114786059952e-5
allele num: 114892
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-17C>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-17C>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-41959902-GATGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959902
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959898
    reference: chr 17
allele count: 10
allele frequency: 8.794610662585967e-5
allele num: 113706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-27_37-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-27_734-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-27_454-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-27_704-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-27_421-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-27_403-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-27_526-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-27_589-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-27_505-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-27_421-24delTCAT
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24063
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 9.75e1
  variant carriers: 10
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: GATGA
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

17-41959908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959908
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959908
    reference: chr 17
allele count: 1
allele frequency: 8.90694028787231e-6
allele num: 112272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-29C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-29C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-41959911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959911
    reference: chr 17
allele count: 1
allele frequency: 8.987794574967195e-6
allele num: 111262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-32G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-32G>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

17-41959914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959914
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959914
    reference: chr 17
allele count: 3
allele frequency: 2.697599136768276e-5
allele num: 111210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-35T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-35T>C
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15026
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

17-41959923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41959923
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41959923
    reference: chr 17
allele count: 1
allele frequency: 9.303017899006437e-6
allele num: 107492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.589-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.421-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.505-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.526-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.37-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.734-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.454-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.421-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.403-44T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.704-44T>C
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5784
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

17-41960222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960222
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960222
    reference: chr 17
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+49T>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+49T>C
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-41960224-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960224
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960223
    reference: chr 17
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+46delG
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+46delG
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: TC
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-41960225-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960225
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960225
    reference: chr 17
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+46G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+46G>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33389
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-41960237-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960237
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960237
    reference: chr 17
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+34T>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+34T>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-41960238-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960238
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960238
    reference: chr 17
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+33G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+33G>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-41960258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960258
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960258
    reference: chr 17
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+13C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33389
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/17-41960259-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960259
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960259
    reference: chr 17
allele count: 2
allele frequency: 1.64883180266781e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+12G>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+12G>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33391
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

17-41960260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960260
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960260
    reference: chr 17
allele count: 4
allele frequency: 3.29777235477435e-5
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+11G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+11G>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33391
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55573
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-41960270-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960270
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960270
    reference: chr 17
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.420+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.36+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.733+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.504+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.453+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.525+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.703+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.420+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.402+1G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.588+1G>C
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33391
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
hgvs: c.453+1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

17-41960283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960283
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960283
    reference: chr 17
allele count: 4
allele frequency: 3.296467834715103e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.576C>T
  hgvsp: ENST00000518766.1:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.492C>T
  hgvsp: ENST00000377184.3:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.408C>T
  hgvsp: ENST00000523501.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.24C>T
  hgvsp: ENST00000520305.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.721C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.513C>T
  hgvsp: ENST00000461854.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.691C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.441C>T
  hgvsp: ENST00000269095.4:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.408C>T
  hgvsp: ENST00000536246.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.441C>T
  hgvsp: ENST00000520406.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.390C>T
  hgvsp: ENST00000523220.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.441C>T
  hgvsp: ENST00000523934.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.408C>T
  hgvsp: ENST00000523762.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala147Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-41960284-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960284
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960284
    reference: chr 17
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.512C>A
  hgvsp: ENSP00000428286.1:p.Ala171Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.407C>A
  hgvsp: ENSP00000430540.1:p.Ala136Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.440C>A
  hgvsp: ENSP00000430797.1:p.Ala147Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.575C>A
  hgvsp: ENSP00000428182.1:p.Ala192Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.389C>A
  hgvsp: ENSP00000428468.1:p.Ala130Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.491C>A
  hgvsp: ENSP00000366389.3:p.Ala164Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.440C>A
  hgvsp: ENSP00000269095.4:p.Ala147Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.440C>A
  hgvsp: ENSP00000428354.1:p.Ala147Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.720C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.23C>A
  hgvsp: ENSP00000428136.1:p.Ala8Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.407C>A
  hgvsp: ENSP00000438012.1:p.Ala136Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.407C>A
  hgvsp: ENSP00000428218.1:p.Ala136Asp
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.690C>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala147Asp
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-41960285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960285
    reference: chr 17
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.439G>A
  hgvsp: ENSP00000269095.4:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.406G>A
  hgvsp: ENSP00000428218.1:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.406G>A
  hgvsp: ENSP00000430540.1:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.511G>A
  hgvsp: ENSP00000428286.1:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.574G>A
  hgvsp: ENSP00000428182.1:p.Ala192Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.439G>A
  hgvsp: ENSP00000428354.1:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.439G>A
  hgvsp: ENSP00000430797.1:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.406G>A
  hgvsp: ENSP00000438012.1:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.22G>A
  hgvsp: ENSP00000428136.1:p.Ala8Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.388G>A
  hgvsp: ENSP00000428468.1:p.Ala130Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.689G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.719G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.490G>A
  hgvsp: ENSP00000366389.3:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala147Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-41960307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960307
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960307
    reference: chr 17
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.417C>T
  hgvsp: ENST00000269095.4:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.667C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.384C>T
  hgvsp: ENST00000536246.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.468C>T
  hgvsp: ENST00000377184.3:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.697C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.417C>T
  hgvsp: ENST00000520406.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.489C>T
  hgvsp: ENST00000461854.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.384C>T
  hgvsp: ENST00000523501.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.552C>T
  hgvsp: ENST00000518766.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.417C>T
  hgvsp: ENST00000523934.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.384C>T
  hgvsp: ENST00000523762.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.366C>T
  hgvsp: ENST00000523220.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg139Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

17-41960309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960309
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960309
    reference: chr 17
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.382C>T
  hgvsp: ENSP00000430540.1:p.Arg128Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.415C>T
  hgvsp: ENSP00000430797.1:p.Arg139Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.382C>T
  hgvsp: ENSP00000428218.1:p.Arg128Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.487C>T
  hgvsp: ENSP00000428286.1:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.382C>T
  hgvsp: ENSP00000438012.1:p.Arg128Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.695C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.466C>T
  hgvsp: ENSP00000366389.3:p.Arg156Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.550C>T
  hgvsp: ENSP00000428182.1:p.Arg184Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.364C>T
  hgvsp: ENSP00000428468.1:p.Arg122Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.415C>T
  hgvsp: ENSP00000269095.4:p.Arg139Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.665C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.415C>T
  hgvsp: ENSP00000428354.1:p.Arg139Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-3C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg139Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-41960312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960312
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960312
    reference: chr 17
allele count: 4
allele frequency: 3.295761650517435e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.484G>A
  hgvsp: ENSP00000428286.1:p.Val162Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.412G>A
  hgvsp: ENSP00000269095.4:p.Val138Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.463G>A
  hgvsp: ENSP00000366389.3:p.Val155Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.361G>A
  hgvsp: ENSP00000428468.1:p.Val121Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.379G>A
  hgvsp: ENSP00000438012.1:p.Val127Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.662G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.379G>A
  hgvsp: ENSP00000428218.1:p.Val127Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.547G>A
  hgvsp: ENSP00000428182.1:p.Val183Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.430G>A
  hgvsp: ENST00000520241.1:c.430G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.412G>A
  hgvsp: ENSP00000428354.1:p.Val138Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.412G>A
  hgvsp: ENSP00000430797.1:p.Val138Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.379G>A
  hgvsp: ENSP00000430540.1:p.Val127Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.692G>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val138Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

17-41960318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960318
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960318
    reference: chr 17
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.478G>A
  hgvsp: ENSP00000428286.1:p.Asp160Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.541G>A
  hgvsp: ENSP00000428182.1:p.Asp181Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.406G>A
  hgvsp: ENSP00000269095.4:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.656G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.355G>A
  hgvsp: ENSP00000428468.1:p.Asp119Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.686G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.373G>A
  hgvsp: ENSP00000430540.1:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.406G>A
  hgvsp: ENSP00000428354.1:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.424G>A
  hgvsp: ENSP00000428938.1:p.Asp142Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.457G>A
  hgvsp: ENSP00000366389.3:p.Asp153Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.406G>A
  hgvsp: ENSP00000430797.1:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.373G>A
  hgvsp: ENSP00000428218.1:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.373G>A
  hgvsp: ENSP00000438012.1:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp136Asn
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-41960319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960319
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960319
    reference: chr 17
allele count: 4
allele frequency: 3.295598727898891e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.372C>T
  hgvsp: ENST00000536246.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.405C>T
  hgvsp: ENST00000520406.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.423C>T
  hgvsp: ENST00000520241.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.354C>T
  hgvsp: ENST00000523220.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.372C>T
  hgvsp: ENST00000523501.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.405C>T
  hgvsp: ENST00000523934.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.685C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.477C>T
  hgvsp: ENST00000461854.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.540C>T
  hgvsp: ENST00000518766.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.405C>T
  hgvsp: ENST00000269095.4:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.456C>T
  hgvsp: ENST00000377184.3:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.372C>T
  hgvsp: ENST00000523762.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.655C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro135Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-41960320-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960320
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960320
    reference: chr 17
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.539C>A
  hgvsp: ENSP00000428182.1:p.Pro180His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.371C>A
  hgvsp: ENSP00000428218.1:p.Pro124His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.404C>A
  hgvsp: ENSP00000430797.1:p.Pro135His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.404C>A
  hgvsp: ENSP00000269095.4:p.Pro135His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-14C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.476C>A
  hgvsp: ENSP00000428286.1:p.Pro159His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.371C>A
  hgvsp: ENSP00000438012.1:p.Pro124His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.422C>A
  hgvsp: ENSP00000428938.1:p.Pro141His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.455C>A
  hgvsp: ENSP00000366389.3:p.Pro152His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.654C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.371C>A
  hgvsp: ENSP00000430540.1:p.Pro124His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.353C>A
  hgvsp: ENSP00000428468.1:p.Pro118His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.404C>A
  hgvsp: ENSP00000428354.1:p.Pro135His
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.684C>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro135His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

17-41960327-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960327
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960327
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.397G>C
  hgvsp: ENSP00000269095.4:p.Val133Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.364G>C
  hgvsp: ENSP00000438012.1:p.Val122Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-21G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.346G>C
  hgvsp: ENSP00000428468.1:p.Val116Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.469G>C
  hgvsp: ENSP00000428286.1:p.Val157Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.397G>C
  hgvsp: ENSP00000428354.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.364G>C
  hgvsp: ENSP00000430540.1:p.Val122Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.448G>C
  hgvsp: ENSP00000366389.3:p.Val150Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.647G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.532G>C
  hgvsp: ENSP00000428182.1:p.Val178Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.364G>C
  hgvsp: ENSP00000428218.1:p.Val122Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.415G>C
  hgvsp: ENSP00000428938.1:p.Val139Leu
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.677G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.397G>C
  hgvsp: ENSP00000430797.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val133Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

17-41960335-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960335
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960335
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.356A>C
  hgvsp: ENSP00000430540.1:p.Asn119Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.407A>C
  hgvsp: ENSP00000428938.1:p.Asn136Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.639A>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.389A>C
  hgvsp: ENSP00000269095.4:p.Asn130Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.440A>C
  hgvsp: ENSP00000366389.3:p.Asn147Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.356A>C
  hgvsp: ENSP00000428218.1:p.Asn119Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.338A>C
  hgvsp: ENSP00000428468.1:p.Asn113Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.461A>C
  hgvsp: ENSP00000428286.1:p.Asn154Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.524A>C
  hgvsp: ENSP00000428182.1:p.Asn175Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-29A>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.356A>C
  hgvsp: ENSP00000438012.1:p.Asn119Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.389A>C
  hgvsp: ENSP00000430797.1:p.Asn130Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.389A>C
  hgvsp: ENSP00000428354.1:p.Asn130Thr
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.669A>C
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn130Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-41960335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960335
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960335
    reference: chr 17
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.639A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.356A>G
  hgvsp: ENSP00000438012.1:p.Asn119Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.669A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.524A>G
  hgvsp: ENSP00000428182.1:p.Asn175Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.389A>G
  hgvsp: ENSP00000269095.4:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.356A>G
  hgvsp: ENSP00000430540.1:p.Asn119Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.389A>G
  hgvsp: ENSP00000428354.1:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.407A>G
  hgvsp: ENSP00000428938.1:p.Asn136Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.338A>G
  hgvsp: ENSP00000428468.1:p.Asn113Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-29A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.356A>G
  hgvsp: ENSP00000428218.1:p.Asn119Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.461A>G
  hgvsp: ENSP00000428286.1:p.Asn154Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.440A>G
  hgvsp: ENSP00000366389.3:p.Asn147Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.389A>G
  hgvsp: ENSP00000430797.1:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn130Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-41960337-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960337
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960337
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.667C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.387C>A
  hgvsp: ENSP00000269095.4:p.Ser129Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.387C>A
  hgvsp: ENSP00000430797.1:p.Ser129Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.637C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.354C>A
  hgvsp: ENSP00000438012.1:p.Ser118Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.354C>A
  hgvsp: ENSP00000430540.1:p.Ser118Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.522C>A
  hgvsp: ENSP00000428182.1:p.Ser174Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.405C>A
  hgvsp: ENSP00000428938.1:p.Ser135Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.438C>A
  hgvsp: ENSP00000366389.3:p.Ser146Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.336C>A
  hgvsp: ENSP00000428468.1:p.Ser112Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.354C>A
  hgvsp: ENSP00000428218.1:p.Ser118Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.459C>A
  hgvsp: ENSP00000428286.1:p.Ser153Arg
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.387C>A
  hgvsp: ENSP00000428354.1:p.Ser129Arg
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33388
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser129Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-41960343-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960343
    reference: chr 17
allele count: 104527
allele frequency: 8.61112484141499e-1
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.399A>G
  hgvsp: ENST00000520241.1:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.516A>G
  hgvsp: ENST00000518766.1:c.516A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.381A>G
  hgvsp: ENST00000269095.4:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.348A>G
  hgvsp: ENST00000536246.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-37A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.432A>G
  hgvsp: ENST00000377184.3:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.348A>G
  hgvsp: ENST00000523501.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.381A>G
  hgvsp: ENST00000520406.1:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.381A>G
  hgvsp: ENST00000523934.1:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.453A>G
  hgvsp: ENST00000461854.1:c.453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.348A>G
  hgvsp: ENST00000523762.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.330A>G
  hgvsp: ENST00000523220.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.661A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.631A>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 823
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 6.75e1
  variant carriers: 1701
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.25e1
  variant carriers: 2218
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 946
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 6.25e1
  variant carriers: 1347
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 35071
  bin: 9.75e1
  variant carriers: 35066
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 1097
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
hgvs: p.Thr127Thr
num of homozygotes: 45512
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

17-41960344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960344
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960344
    reference: chr 17
allele count: 5
allele frequency: 4.12139995713744e-5
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.347C>T
  hgvsp: ENSP00000438012.1:p.Thr116Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.431C>T
  hgvsp: ENSP00000366389.3:p.Thr144Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.329C>T
  hgvsp: ENSP00000428468.1:p.Thr110Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.347C>T
  hgvsp: ENSP00000430540.1:p.Thr116Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.347C>T
  hgvsp: ENSP00000428218.1:p.Thr116Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.515C>T
  hgvsp: ENSP00000428182.1:p.Thr172Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.380C>T
  hgvsp: ENSP00000269095.4:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.380C>T
  hgvsp: ENSP00000430797.1:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.398C>T
  hgvsp: ENSP00000428938.1:p.Thr133Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.380C>T
  hgvsp: ENSP00000428354.1:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.630C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.452C>T
  hgvsp: ENSP00000428286.1:p.Thr151Ile
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.660C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr127Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

17-41960352-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960352
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960352
    reference: chr 17
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.622G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.339G>C
  hgvsp: ENST00000523762.1:c.339G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.507G>C
  hgvsp: ENST00000518766.1:c.507G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.372G>C
  hgvsp: ENST00000520406.1:c.372G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.339G>C
  hgvsp: ENST00000523501.1:c.339G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.423G>C
  hgvsp: ENST00000377184.3:c.423G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.339G>C
  hgvsp: ENST00000536246.1:c.339G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.372G>C
  hgvsp: ENST00000523934.1:c.372G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.321G>C
  hgvsp: ENST00000523220.1:c.321G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.372G>C
  hgvsp: ENST00000521178.1:c.372G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.390G>C
  hgvsp: ENST00000520241.1:c.390G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-46G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.652G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.372G>C
  hgvsp: ENST00000269095.4:c.372G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.444G>C
  hgvsp: ENST00000461854.1:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu124Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-41960363-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960363
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960362
    reference: chr 17
allele count: 2
allele frequency: 1.654204989082247e-5
allele num: 120904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.360delC
  hgvsp: ENSP00000428354.1:p.Ser121AlafsTer?
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.640delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-58delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.309delC
  hgvsp: ENSP00000428468.1:p.Ser104AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.495delC
  hgvsp: ENSP00000428182.1:p.Ser166AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.327delC
  hgvsp: ENSP00000438012.1:p.Ser110AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.610delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.327delC
  hgvsp: ENSP00000428218.1:p.Ser110AlafsTer?
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.360delC
  hgvsp: ENSP00000269095.4:p.Ser121AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.327delC
  hgvsp: ENSP00000430540.1:p.Ser110AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.360delC
  hgvsp: ENSP00000430797.1:p.Ser121AlafsTer?
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.360delC
  hgvsp: ENSP00000430443.1:p.Ser121AlafsTer?
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.432delC
  hgvsp: ENSP00000428286.1:p.Ser145AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.378delC
  hgvsp: ENSP00000428938.1:p.Ser127AlafsTer?
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.411delC
  hgvsp: ENSP00000366389.3:p.Ser138AlafsTer33
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser121AlafsTer33
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

17-41960366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960366
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960366
    reference: chr 17
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.376C>T
  hgvsp: ENSP00000428938.1:p.Pro126Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.358C>T
  hgvsp: ENSP00000269095.4:p.Pro120Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.358C>T
  hgvsp: ENSP00000430443.1:p.Pro120Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.358C>T
  hgvsp: ENSP00000428354.1:p.Pro120Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.409C>T
  hgvsp: ENSP00000366389.3:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.307C>T
  hgvsp: ENSP00000428468.1:p.Pro103Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.358C>T
  hgvsp: ENSP00000430797.1:p.Pro120Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.325C>T
  hgvsp: ENSP00000428218.1:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.430C>T
  hgvsp: ENSP00000428286.1:p.Pro144Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.493C>T
  hgvsp: ENSP00000428182.1:p.Pro165Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.325C>T
  hgvsp: ENSP00000438012.1:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.325C>T
  hgvsp: ENSP00000430540.1:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.638C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.608C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro120Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

17-41960380-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960380
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960380
    reference: chr 17
allele count: 1
allele frequency: 8.375349670848758e-6
allele num: 119398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.293A>G
  hgvsp: ENSP00000428468.1:p.Tyr98Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.311A>G
  hgvsp: ENSP00000430540.1:p.Tyr104Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.344A>G
  hgvsp: ENSP00000428354.1:p.Tyr115Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.624A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.344A>G
  hgvsp: ENSP00000269095.4:p.Tyr115Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.362A>G
  hgvsp: ENSP00000428938.1:p.Tyr121Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.311A>G
  hgvsp: ENSP00000438012.1:p.Tyr104Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.344A>G
  hgvsp: ENSP00000430443.1:p.Tyr115Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.594A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.479A>G
  hgvsp: ENSP00000428182.1:p.Tyr160Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-74A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.311A>G
  hgvsp: ENSP00000428218.1:p.Tyr104Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.344A>G
  hgvsp: ENSP00000430797.1:p.Tyr115Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.395A>G
  hgvsp: ENSP00000366389.3:p.Tyr132Cys
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.416A>G
  hgvsp: ENSP00000428286.1:p.Tyr139Cys
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr115Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-41960403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960403
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960403
    reference: chr 17
allele count: 1
allele frequency: 9.23924090396733e-6
allele num: 108234
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.321C>T
  hgvsp: ENST00000269095.4:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.321C>T
  hgvsp: ENST00000521178.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.288C>T
  hgvsp: ENST00000523501.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.576C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.288C>T
  hgvsp: ENST00000523762.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.456C>T
  hgvsp: ENST00000518766.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-97C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.270C>T
  hgvsp: ENST00000523220.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.321C>T
  hgvsp: ENST00000523934.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.288C>T
  hgvsp: ENST00000536246.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.601C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.393C>T
  hgvsp: ENST00000461854.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.372C>T
  hgvsp: ENST00000377184.3:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.571C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.339C>T
  hgvsp: ENST00000520241.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.321C>T
  hgvsp: ENST00000520406.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His107His
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-41960406-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960406
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960406
    reference: chr 17
allele count: 9
allele frequency: 8.494733265375468e-5
allele num: 105948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.336G>C
  hgvsp: ENST00000520241.1:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.285G>C
  hgvsp: ENST00000523762.1:c.285G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.318G>C
  hgvsp: ENST00000269095.4:c.318G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.285G>C
  hgvsp: ENST00000523501.1:c.285G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.318G>C
  hgvsp: ENST00000521178.1:c.318G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.285G>C
  hgvsp: ENST00000536246.1:c.285G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.369G>C
  hgvsp: ENST00000377184.3:c.369G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.453G>C
  hgvsp: ENST00000518766.1:c.453G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.318G>C
  hgvsp: ENST00000520406.1:c.318G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.267G>C
  hgvsp: ENST00000523220.1:c.267G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.318G>C
  hgvsp: ENST00000523934.1:c.318G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.390G>C
  hgvsp: ENST00000461854.1:c.390G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.598G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.568G>C
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.573G>C
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr106Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

17-41960406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960406
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960406
    reference: chr 17
allele count: 1
allele frequency: 9.438592517083852e-6
allele num: 105948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.285G>A
  hgvsp: ENST00000523501.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.318G>A
  hgvsp: ENST00000520406.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.336G>A
  hgvsp: ENST00000520241.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.285G>A
  hgvsp: ENST00000536246.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.318G>A
  hgvsp: ENST00000521178.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.267G>A
  hgvsp: ENST00000523220.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.568G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.453G>A
  hgvsp: ENST00000518766.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.285G>A
  hgvsp: ENST00000523762.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.318G>A
  hgvsp: ENST00000269095.4:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.369G>A
  hgvsp: ENST00000377184.3:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.573G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.318G>A
  hgvsp: ENST00000523934.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-100G>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.390G>A
  hgvsp: ENST00000461854.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.598G>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr106Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-41960407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960407
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960407
    reference: chr 17
allele count: 2
allele frequency: 1.908906959874776e-5
allele num: 104772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.317C>T
  hgvsp: ENSP00000430797.1:p.Thr106Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.317C>T
  hgvsp: ENSP00000269095.4:p.Thr106Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.389C>T
  hgvsp: ENSP00000428286.1:p.Thr130Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.572C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.368C>T
  hgvsp: ENSP00000366389.3:p.Thr123Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.317C>T
  hgvsp: ENSP00000428354.1:p.Thr106Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.452C>T
  hgvsp: ENSP00000428182.1:p.Thr151Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.597C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.284C>T
  hgvsp: ENSP00000428218.1:p.Thr95Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.335C>T
  hgvsp: ENSP00000428938.1:p.Thr112Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.317C>T
  hgvsp: ENSP00000430443.1:p.Thr106Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.284C>T
  hgvsp: ENSP00000438012.1:p.Thr95Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.284C>T
  hgvsp: ENSP00000430540.1:p.Thr95Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.567C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.266C>T
  hgvsp: ENSP00000428468.1:p.Thr89Met
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-101C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19756
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr106Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-41960422-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960422
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960422
    reference: chr 17
allele count: 1
allele frequency: 1.099021870535224e-5
allele num: 90990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.304-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.439-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.304-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.559-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.271-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.582A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.304-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.253-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.271-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.271-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.554-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.304-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.322-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-114-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.376-2A>G
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.355-2A>G
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304-2A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

17-41960422-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960422
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960421
    reference: chr 17
allele count: 1
allele frequency: 1.099021870535224e-5
allele num: 90990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.271-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.304-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.554-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.304-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.304-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.304-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.439-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.559-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.271-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.322-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.376-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.271-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.253-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.355-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-114-3delC
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.581delC
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304-3delC
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: TG
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

17-41960424-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960424
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960424
    reference: chr 17
allele count: 1
allele frequency: 1.100424763958888e-5
allele num: 90874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.271-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.304-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.376-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.322-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.271-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.439-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.304-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.304-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-114-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.253-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.559-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.304-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.355-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.580C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.554-4C>A
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.271-4C>A
  variant of: http://identifiers.org/hgnc/7220
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304-4C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

17-41960431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41960431
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 41960431
    reference: chr 17
allele count: 2
allele frequency: 2.29089826120822e-5
allele num: 87302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428136
  ensembl transcript: ENST00000520305
  gene symbol: MPP2
  hgvsc: ENST00000520305.1:c.-114-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428182
  ensembl transcript: ENST00000518766
  gene symbol: MPP2
  hgvsc: ENST00000518766.1:c.439-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428286
  ensembl transcript: ENST00000461854
  gene symbol: MPP2
  hgvsc: ENST00000461854.1:c.376-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428218
  ensembl transcript: ENST00000523762
  gene symbol: MPP2
  hgvsc: ENST00000523762.1:c.271-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000269095
  ensembl transcript: ENST00000269095
  gene symbol: MPP2
  hgvsc: ENST00000269095.4:c.304-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000438012
  ensembl transcript: ENST00000536246
  gene symbol: MPP2
  hgvsc: ENST00000536246.1:c.271-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000366389
  ensembl transcript: ENST00000377184
  gene symbol: MPP2
  hgvsc: ENST00000377184.3:c.355-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000520319
  gene symbol: MPP2
  hgvsc: ENST00000520319.1:n.573C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430443
  ensembl transcript: ENST00000521178
  gene symbol: MPP2
  hgvsc: ENST00000521178.1:c.304-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430540
  ensembl transcript: ENST00000523501
  gene symbol: MPP2
  hgvsc: ENST00000523501.1:c.271-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428354
  ensembl transcript: ENST00000520406
  gene symbol: MPP2
  hgvsc: ENST00000520406.1:c.304-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000430797
  ensembl transcript: ENST00000523934
  gene symbol: MPP2
  hgvsc: ENST00000523934.1:c.304-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000524294
  gene symbol: MPP2
  hgvsc: ENST00000524294.1:n.559-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428468
  ensembl transcript: ENST00000523220
  gene symbol: MPP2
  hgvsc: ENST00000523220.1:c.253-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl protein: ENSP00000428938
  ensembl transcript: ENST00000520241
  gene symbol: MPP2
  hgvsc: ENST00000520241.1:c.322-11C>T
  variant of: http://identifiers.org/hgnc/7220
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108852
  ensembl transcript: ENST00000473246
  gene symbol: MPP2
  hgvsc: ENST00000473246.1:n.554-11C>T
  variant of: http://identifiers.org/hgnc/7220
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21470
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS

GenotypeQuality
all individuals: 636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013409673045051e-5
allele num: 66370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.496e1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.518e0

DP
type: SiteQuality
SIO_000300: 3.513381e6

GenotypeQuality
all individuals: 45797
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013500482160077e-5
allele num: 66368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.513622e6

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

QD
type: SiteQuality
SIO_000300: 1.764e1

FS
type: SiteQuality
SIO_000300: 2.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

DP
type: SiteQuality
SIO_000300: 3.513966e6

FS
type: SiteQuality
SIO_000300: 7.564e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.318e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.254e0

FS
type: SiteQuality
SIO_000300: 1.911e0

QD
type: SiteQuality
SIO_000300: 1.165e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

DP
type: SiteQuality
SIO_000300: 3.51392e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1997
bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012774162448783e-5
allele num: 66384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 1.873e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 3.51471e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 1.014e1

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 876
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GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 1.537e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 5.765e1

FS
type: SiteQuality
SIO_000300: 9.167e0

VQSLOD
type: SiteQuality
SIO_000300: -3.371e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.164e0

DP
type: SiteQuality
SIO_000300: 3.51477e6

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 141

GenotypeQuality
all individuals: 242
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variant carriers: 237

GenotypeQuality
all individuals: 278
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variant carriers: 153

GenotypeQuality
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variant carriers: 85

GenotypeQuality
all individuals: 11
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GenotypeQuality
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variant carriers: 129

GenotypeQuality
all individuals: 6
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variant carriers: 6

GenotypeQuality
all individuals: 245
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variant carriers: 231

GenotypeQuality
all individuals: 770
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GenotypeQuality
all individuals: 58058
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variant carriers: 58050

GenotypeQuality
all individuals: 17
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variant carriers: 16

GenotypeQuality
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variant carriers: 77

GenotypeQuality
all individuals: 124
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variant carriers: 94

GenotypeQuality
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variant carriers: 51

GenotypeQuality
all individuals: 75
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variant carriers: 75

GenotypeQuality
all individuals: 212
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variant carriers: 190

South Asian
type: Population
allele count: 15029
allele frequency: 9.101865310077519e-1
allele num: 16512
num of homozygotes: 6849

Other
type: Population
allele count: 808
allele frequency: 8.938053097345132e-1
allele num: 904
num of homozygotes: 361

African
type: Population
allele count: 9363
allele frequency: 9.011549566891242e-1
allele num: 10390
num of homozygotes: 4203

East Asian
type: Population
allele count: 8637
allele frequency: 9.996527777777777e-1
allele num: 8640
num of homozygotes: 4317

European (Finnish)
type: Population
allele count: 5565
allele frequency: 8.416515426497277e-1
allele num: 6612
num of homozygotes: 2347

European (Non-Finnish)
type: Population
allele count: 57566
allele frequency: 8.651337541328524e-1
allele num: 66540
num of homozygotes: 24927

Latino
type: Population
allele count: 10966
allele frequency: 9.477960242005186e-1
allele num: 11570
num of homozygotes: 5200

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.073e1

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1982
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

FS
type: SiteQuality
SIO_000300: 6.45e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.706495e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513500423780119e-5
allele num: 66072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.204e0

DP
type: SiteQuality
SIO_000300: 1.700329e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 4.894e0

QD
type: SiteQuality
SIO_000300: 8.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43834
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 62
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GenotypeQuality
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GenotypeQuality
all individuals: 644
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GenotypeQuality
all individuals: 1961
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GenotypeQuality
all individuals: 989
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 1001
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GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 9.561e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.662e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

VQSLOD
type: SiteQuality
SIO_000300: -2.015e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515059693351918e-5
allele num: 66004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

FS
type: SiteQuality
SIO_000300: 7.77e-1

QD
type: SiteQuality
SIO_000300: 9.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.696746e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.545041359876375e-5
allele num: 66006
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

DP
type: SiteQuality
SIO_000300: 1.696227e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.197e1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030027573250917e-5
allele num: 66006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.696227e6

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.197e1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.696227e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.055e1

VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.664e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217285453438831e-4
allele num: 16430
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
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SIO_000300: -2.137e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521606816798539e-5
allele num: 65720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
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VQSLOD
type: SiteQuality
SIO_000300: -2.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.897e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521745746720638e-5
allele num: 65714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.148e0

VQSLOD
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

DP
type: SiteQuality
SIO_000300: 1.669837e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.75e1
variant carriers: 379

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

African
type: Population
allele count: 345
allele frequency: 3.38235294117647e-2
allele num: 10200
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.573031310021036e-4
allele num: 65602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.132206932590141e-3
allele num: 11482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.982e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 7.39e-1

DP
type: SiteQuality
SIO_000300: 1.661097e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

GenotypeQuality
all individuals: 1694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43268
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 8.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 5.432e0

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
SIO_000300: 1.63535e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

GenotypeQuality
all individuals: 1680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
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variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8334
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 42867
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.595165885488466e-5
allele num: 65286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.629612e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

FS
type: SiteQuality
SIO_000300: 9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.365e1

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
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variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
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variant carriers: 0

GenotypeQuality
all individuals: 41290
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variant carriers: 0

GenotypeQuality
all individuals: 7761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54640769492469e-5
allele num: 64666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.583413e6

GenotypeQuality
all individuals: 39941
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
all individuals: 1356
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 1420
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GenotypeQuality
all individuals: 7324
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variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.925383791503035e-5
allele num: 11204
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -6.64e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.338e1

DP
type: SiteQuality
SIO_000300: 1.541305e6

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6925
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variant carriers: 0

GenotypeQuality
all individuals: 625
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GenotypeQuality
all individuals: 1353
bin: 7.25e1
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GenotypeQuality
all individuals: 1300
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.188777936281503e-4
allele num: 8412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.069e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

FS
type: SiteQuality
SIO_000300: 1.025e0

DP
type: SiteQuality
SIO_000300: 1.517034e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.25e1
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GenotypeQuality
all individuals: 1300
bin: 7.75e1
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GenotypeQuality
all individuals: 38514
bin: 6.25e1
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GenotypeQuality
all individuals: 6925
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variant carriers: 0

GenotypeQuality
all individuals: 497
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 537
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.621231979030144e-4
allele num: 15260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

FS
type: SiteQuality
SIO_000300: 1.025e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.22e1

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 1.517034e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

GenotypeQuality
all individuals: 1506
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
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GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.605019815059445e-5
allele num: 15140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.144752979653448e-5
allele num: 63598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.482953e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.429e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.508e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.242144177449168e-4
allele num: 9738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62968
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14910
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.137426900584795e-5
allele num: 10944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.338e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.408576e6

MQ
type: SiteQuality
SIO_000300: 5.373e1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

FS
type: SiteQuality
SIO_000300: 1.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.686340640809444e-4
allele num: 5930
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62272
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.278529e6

QD
type: SiteQuality
SIO_000300: 1.273e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

FS
type: SiteQuality
SIO_000300: 3.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617390179206832e-5
allele num: 61828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

QD
type: SiteQuality
SIO_000300: 1.487e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

DP
type: SiteQuality
SIO_000300: 1.190579e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.553e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 3394
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.33009889904833e-5
allele num: 10718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.103049421661409e-4
allele num: 9510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.184486e6

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

QD
type: SiteQuality
SIO_000300: 1.531e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667444807576869e-5
allele num: 59972
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.572e0

VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -1.036e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.372e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.116e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.239e0

FS
type: SiteQuality
SIO_000300: 4.278e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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Other
type: Population
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African
type: Population
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allele frequency: 9.648784253184099e-5
allele num: 10364
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
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DP
type: SiteQuality
SIO_000300: 5.919528e6

QD
type: SiteQuality
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ClippingRankSum
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MQRankSum
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VQSLOD
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SIO_000300: -8.903e-1

FS
type: SiteQuality
SIO_000300: 5.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.953e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.613e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.255e0

QD
type: SiteQuality
SIO_000300: 1.026e1

DP
type: SiteQuality
SIO_000300: 5.921524e6

MQ
type: SiteQuality
SIO_000300: 5.859e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.898e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

QD
type: SiteQuality
SIO_000300: 1.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

FS
type: SiteQuality
SIO_000300: 3.241e0

DP
type: SiteQuality
SIO_000300: 5.92164e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.976e0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.924498e6

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.199e0

FS
type: SiteQuality
SIO_000300: 1.114e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.058e1

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 9.401999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -2.195e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.319e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 5.92462e6

QD
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000780101413184e-5
allele num: 66658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.806e0

DP
type: SiteQuality
SIO_000300: 5.924976e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

DP
type: SiteQuality
SIO_000300: 5.925043e6

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
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SIO_000300: 8.63e-1

FS
type: SiteQuality
SIO_000300: 2.998e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498695378340282e-5
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 5.925996e6

FS
type: SiteQuality
SIO_000300: 1.214e0

BaseQRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
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SIO_000300: 8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 314
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GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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European (Finnish)
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European (Non-Finnish)
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MQ
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DP
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QD
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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Other
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African
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European (Finnish)
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VQSLOD
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Other
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African
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Latino
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South Asian
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MQ
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DP
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ClippingRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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South Asian
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Latino
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European (Non-Finnish)
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African
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VQSLOD
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

Other
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ReadPosRankSum
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SIO_000300: -2.05e-1

FS
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.917e1

ReadPosRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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SIO_000300: 1.8e-2

BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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QD
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
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BaseQRankSum
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MQ
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ReadPosRankSum
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SIO_000300: -2.198e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66660
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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VQSLOD
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 3737

GenotypeDepth
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GenotypeDepth
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variant carriers: 483

GenotypeDepth
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GenotypeDepth
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variant carriers: 3185

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 799
allele frequency: 8.799559471365639e-1
allele num: 908
num of homozygotes: 352

European (Finnish)
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allele count: 5557
allele frequency: 8.401874811006955e-1
allele num: 6614
num of homozygotes: 2342

East Asian
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allele count: 8651
allele frequency: 9.996533394961867e-1
allele num: 8654
num of homozygotes: 4324

European (Non-Finnish)
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allele count: 57325
allele frequency: 8.591876498800959e-1
allele num: 66720
num of homozygotes: 24661

African
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allele count: 6431
allele frequency: 6.182464910594117e-1
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num of homozygotes: 2000

Latino
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allele frequency: 9.302124719295215e-1
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num of homozygotes: 5017

South Asian
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allele count: 14994
allele frequency: 9.081768625075711e-1
allele num: 16510
num of homozygotes: 6816

QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.965e1

FS
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DP
type: SiteQuality
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GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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Other
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South Asian
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.63020030816641e-5
allele num: 10384
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Latino
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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DP
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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DP
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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FS
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QD
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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MQRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeDepth
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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Other
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ClippingRankSum
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MQ
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MQRankSum
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

Latino
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East Asian
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African
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Other
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European (Non-Finnish)
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South Asian
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DP
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ClippingRankSum
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MQ
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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African
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Other
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South Asian
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MQ
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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African
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QD
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.206687806284232e-5
allele num: 13876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.76e0

DP
type: SiteQuality
SIO_000300: 1.036149e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e0

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

QD
type: SiteQuality
SIO_000300: 6.8e0

VQSLOD
type: SiteQuality
SIO_000300: -3.484e0

GenotypeDepth
all individuals: 13751
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2739
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2466
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2902
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4666
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.463054187192118e-4
allele num: 8120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.163e0