17-30661473-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661473
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661473
    reference: chr 17
allele count: 1
allele frequency: 1.066007163568139e-5
allele num: 93808
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.871+15C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.242+15C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.75+15C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9929G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.871+15C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9929G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.334+15C>G
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20763
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-30661476-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661476
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661476
    reference: chr 17
allele count: 1
allele frequency: 1.059030351809883e-5
allele num: 94426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.334+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9932G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.75+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.871+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9932G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.871+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.242+12C>G
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

17-30661477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661477
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661477
    reference: chr 17
allele count: 1
allele frequency: 1.056367785008028e-5
allele num: 94664
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.871+11A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.334+11A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9933T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9933T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.871+11A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.242+11A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.75+11A>G
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

17-30661481-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661481
    reference: chr 17
allele count: 9
allele frequency: 9.40950150552024e-5
allele num: 95648
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.871+7T>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9937A>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.334+7T>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.242+7T>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.871+7T>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9937A>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.75+7T>A
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23680
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
hgvs: c.871+7T>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-30661484-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661484
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661484
    reference: chr 17
allele count: 29
allele frequency: 3.000268989633553e-4
allele num: 96658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.334+4A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.242+4A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9940T>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.871+4A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.871+4A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9940T>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.75+4A>C
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 24358
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
hgvs: c.871+4A>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-30661501-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661501
    reference: chr 17
allele count: 1
allele frequency: 9.943520801845517e-6
allele num: 100568
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9957C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.229G>C
  hgvsp: ENSP00000462873.1:p.Gln77His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9957C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.62G>C
  hgvsp: ENSP00000464416.1:p.Gln21His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.858G>C
  hgvsp: ENSP00000464275.1:p.Gln286His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.858G>C
  hgvsp: ENSP00000225805.4:p.Gln286His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.321G>C
  hgvsp: ENSP00000464759.1:p.Gln107His
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln286His
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

17-30661511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661511
    reference: chr 17
allele count: 3
allele frequency: 2.9356505401597e-5
allele num: 102192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.848C>T
  hgvsp: ENSP00000225805.4:p.Ser283Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.52C>T
  hgvsp: ENSP00000464416.1:p.Ser18Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.219C>T
  hgvsp: ENSP00000462873.1:p.Ser74Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.311C>T
  hgvsp: ENSP00000464759.1:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9967G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.824C>T
  hgvsp: ENSP00000462127.1:p.Ser275Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.848C>T
  hgvsp: ENSP00000464275.1:p.Ser283Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9967G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser283Phe
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-30661519-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661519
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661519
    reference: chr 17
allele count: 1
allele frequency: 9.718550769709221e-6
allele num: 102896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.211C>G
  hgvsp: ENSP00000462873.1:p.Cys71Trp
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9975G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.840C>G
  hgvsp: ENSP00000225805.4:p.Cys280Trp
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.303C>G
  hgvsp: ENSP00000464759.1:p.Cys101Trp
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.44C>G
  hgvsp: ENSP00000464416.1:p.Cys15Trp
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9975G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.816C>G
  hgvsp: ENSP00000462127.1:p.Cys272Trp
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.840C>G
  hgvsp: ENSP00000464275.1:p.Cys280Trp
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25622
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys280Trp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

17-30661522-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661522
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661522
    reference: chr 17
allele count: 1
allele frequency: 9.682604233234571e-6
allele num: 103278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.300T>C
  hgvsp: ENST00000580558.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.41T>C
  hgvsp: ENST00000582961.1:c.41T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.813T>C
  hgvsp: ENST00000583774.1:c.813T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.208T>C
  hgvsp: ENST00000583104.1:c.208T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.837T>C
  hgvsp: ENST00000577809.1:c.837T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9978A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9978A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.837T>C
  hgvsp: ENST00000225805.4:c.837T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp279Asp
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-30661524-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661524
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661524
    reference: chr 17
allele count: 2
allele frequency: 1.93918709277071e-5
allele num: 103136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.811G>T
  hgvsp: ENSP00000462127.1:p.Asp271Tyr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.39G>T
  hgvsp: ENSP00000464416.1:p.Asp14Tyr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.298G>T
  hgvsp: ENSP00000464759.1:p.Asp100Tyr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.206G>T
  hgvsp: ENSP00000462873.1:p.Asp70Tyr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.835G>T
  hgvsp: ENSP00000464275.1:p.Asp279Tyr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.835G>T
  hgvsp: ENSP00000225805.4:p.Asp279Tyr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9980C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9980C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp279Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-30661525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661525
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661525
    reference: chr 17
allele count: 6
allele frequency: 5.810237638719424e-5
allele num: 103266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.38C>T
  hgvsp: ENST00000582961.1:c.38C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.205C>T
  hgvsp: ENST00000583104.1:c.205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.297C>T
  hgvsp: ENST00000580558.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+9981G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.834C>T
  hgvsp: ENST00000225805.4:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.834C>T
  hgvsp: ENST00000577809.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.810C>T
  hgvsp: ENST00000583774.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+9981G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25412
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile278Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-30661547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661547
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661547
    reference: chr 17
allele count: 1
allele frequency: 9.551280826758868e-6
allele num: 104698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.16A>G
  hgvsp: ENSP00000464416.1:p.Glu6Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.812A>G
  hgvsp: ENSP00000464275.1:p.Glu271Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.275A>G
  hgvsp: ENSP00000464759.1:p.Glu92Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.812A>G
  hgvsp: ENSP00000225805.4:p.Glu271Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.788A>G
  hgvsp: ENSP00000462127.1:p.Glu263Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10003T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.183A>G
  hgvsp: ENSP00000462873.1:p.Glu62Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10003T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu271Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-30661549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661549
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661549
    reference: chr 17
allele count: 1
allele frequency: 9.553105714667839e-6
allele num: 104678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.810G>A
  hgvsp: ENST00000225805.4:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10005C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10005C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.14G>A
  hgvsp: ENST00000582961.1:c.14G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.810G>A
  hgvsp: ENST00000577809.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.786G>A
  hgvsp: ENST00000583774.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.181G>A
  hgvsp: ENST00000583104.1:c.181G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.273G>A
  hgvsp: ENST00000580558.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11577
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu270Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-30661562-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661562
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661562
    reference: chr 17
allele count: 1
allele frequency: 9.48856627763545e-6
allele num: 105390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464416
  ensembl transcript: ENST00000582961
  gene symbol: C17orf75
  hgvsc: ENST00000582961.1:c.1T>C
  hgvsp: ENST00000582961.1:c.1T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10018A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.260T>C
  hgvsp: ENSP00000464759.1:p.Met87Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.260T>C
  hgvsp: ENSP00000464845.1:p.Met87Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.773T>C
  hgvsp: ENSP00000462127.1:p.Met258Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.168T>C
  hgvsp: ENSP00000462873.1:p.Met57Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.797T>C
  hgvsp: ENSP00000225805.4:p.Met266Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.797T>C
  hgvsp: ENSP00000464275.1:p.Met266Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10018A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23004
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met266Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-30661567-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661567
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661567
    reference: chr 17
allele count: 7
allele frequency: 6.645149041199924e-5
allele num: 105340
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.792G>C
  hgvsp: ENSP00000464275.1:p.Leu264Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10023C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.768G>C
  hgvsp: ENSP00000462127.1:p.Leu256Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.255G>C
  hgvsp: ENSP00000464845.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.255G>C
  hgvsp: ENSP00000464759.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10023C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.792G>C
  hgvsp: ENSP00000225805.4:p.Leu264Phe
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.163G>C
  hgvsp: ENSP00000462873.1:p.Leu55Phe
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22972
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3471
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu264Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-30661610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661610
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661610
    reference: chr 17
allele count: 1
allele frequency: 9.356812695323466e-6
allele num: 106874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.725C>T
  hgvsp: ENSP00000462127.1:p.Ala242Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.120C>T
  hgvsp: ENSP00000462873.1:p.Ala41Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.749C>T
  hgvsp: ENSP00000464275.1:p.Ala250Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.212C>T
  hgvsp: ENSP00000464759.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.212C>T
  hgvsp: ENSP00000464845.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.749C>T
  hgvsp: ENSP00000225805.4:p.Ala250Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10066G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10066G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25219
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala250Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-30661611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661611
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661611
    reference: chr 17
allele count: 1
allele frequency: 9.368208049164355e-6
allele num: 106744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.724G>A
  hgvsp: ENSP00000462127.1:p.Ala242Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.119G>A
  hgvsp: ENSP00000462873.1:p.Ala41Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10067C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.211G>A
  hgvsp: ENSP00000464759.1:p.Ala71Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.748G>A
  hgvsp: ENSP00000225805.4:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.211G>A
  hgvsp: ENSP00000464845.1:p.Ala71Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.748G>A
  hgvsp: ENSP00000464275.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10067C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala250Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-30661615-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661615
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661615
    reference: chr 17
allele count: 1
allele frequency: 9.340905694216111e-6
allele num: 107056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.115T>G
  hgvsp: ENSP00000462873.1:p.Ser39Arg
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.720T>G
  hgvsp: ENSP00000462127.1:p.Ser240Arg
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.207T>G
  hgvsp: ENSP00000464759.1:p.Ser69Arg
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.207T>G
  hgvsp: ENSP00000464845.1:p.Ser69Arg
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10071A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.744T>G
  hgvsp: ENSP00000225805.4:p.Ser248Arg
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.744T>G
  hgvsp: ENSP00000464275.1:p.Ser248Arg
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10071A>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser248Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

17-30661615-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661615
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661615
    reference: chr 17
allele count: 2
allele frequency: 1.868181138843222e-5
allele num: 107056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.744T>C
  hgvsp: ENST00000225805.4:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.207T>C
  hgvsp: ENST00000581747.1:c.207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.744T>C
  hgvsp: ENST00000577809.1:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.720T>C
  hgvsp: ENST00000583774.1:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.115T>C
  hgvsp: ENST00000583104.1:c.115T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.207T>C
  hgvsp: ENST00000580558.1:c.207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10071A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10071A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25027
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser248Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/17-30661623-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661623
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661623
    reference: chr 17
allele count: 3
allele frequency: 2.824858757062147e-5
allele num: 106200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.736T>G
  hgvsp: ENSP00000225805.4:p.Phe246Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.199T>G
  hgvsp: ENSP00000464845.1:p.Phe67Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10079A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.107T>G
  hgvsp: ENSP00000462873.1:p.Phe37Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.199T>G
  hgvsp: ENSP00000464759.1:p.Phe67Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.712T>G
  hgvsp: ENSP00000462127.1:p.Phe238Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.736T>G
  hgvsp: ENSP00000464275.1:p.Phe246Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10079A>C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe246Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-30661628-C-CCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661628
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661630
    reference: chr 17
allele count: 5
allele frequency: 4.673071890537964e-5
allele num: 106996
alternate allele: CCA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.106-6_106-5dupTG
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.735-6_735-5dupTG
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.711-6_711-5dupTG
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.198-6_198-5dupTG
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10093_48+10094dupCA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.198-6_198-5dupTG
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10093_95+10094dupCA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.735-6_735-5dupTG
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24537
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12297
  bin: 2.25e1
  variant carriers: 0
hgvs: c.735-6_735-5dupTG
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-30661632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661632
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661632
    reference: chr 17
allele count: 1
allele frequency: 9.327662114767555e-6
allele num: 107208
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10088A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.198-8T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10088A>G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.735-8T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.711-8T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.198-8T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.735-8T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.106-8T>C
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12915
  bin: 2.25e1
  variant carriers: 0
hgvs: c.735-8T>C
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-30661640-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661640
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661640
    reference: chr 17
allele count: 3
allele frequency: 2.813783788853664e-5
allele num: 106618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.735-16C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.198-16C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.735-16C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10096G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.106-16C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.711-16C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.198-16C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10096G>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14360
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/17-30661655-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661655
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661655
    reference: chr 17
allele count: 1
allele frequency: 9.4553706505295e-6
allele num: 105760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.106-31G>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10111C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.735-31G>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.198-31G>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10111C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.711-31G>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.735-31G>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.198-31G>T
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-30661655-C-CACAAGTCCTGCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661655
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661667
    reference: chr 17
allele count: 2
allele frequency: 1.8910741301059e-5
allele num: 105760
alternate allele: CACAAGTCCTGCA
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17076
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-30661668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661668
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661668
    reference: chr 17
allele count: 2
allele frequency: 1.957943376277558e-5
allele num: 102148
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10124C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.711-44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.106-44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10124C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.198-44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.735-44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.198-44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.735-44G>A
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16724
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-30661669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661669
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661669
    reference: chr 17
allele count: 61
allele frequency: 5.997915478554994e-4
allele num: 101702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.106-45C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10125G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10125G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.711-45C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.735-45C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.735-45C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.198-45C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.198-45C>T
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15229
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16683
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10602
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

17-30661750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661750
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661750
    reference: chr 17
allele count: 2
allele frequency: 3.041640052316209e-5
allele num: 65754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10206C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10206C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.274G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+44G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+44G>A
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17285
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

17-30661752-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661752
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661752
    reference: chr 17
allele count: 1
allele frequency: 1.515013786625458e-5
allele num: 66006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10208T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+42A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+42A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+42A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+42A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.272A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10208T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+42A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+42A>T
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

17-30661756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661756
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661756
    reference: chr 17
allele count: 3
allele frequency: 4.575542201750907e-5
allele num: 65566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10212G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+38C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+38C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10212G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+38C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.268C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+38C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+38C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+38C>T
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17070
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5067
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-30661759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661759
    reference: chr 17
allele count: 1
allele frequency: 1.527370478983382e-5
allele num: 65472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+35C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+35C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10215G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+35C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+35C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+35C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.265C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10215G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+35C>T
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16925
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

17-30661775-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661775
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661775
    reference: chr 17
allele count: 1
allele frequency: 1.519110408944522e-5
allele num: 65828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+19A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+19A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10231T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+19A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+19A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.249A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+19A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10231T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+19A>G
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

17-30661776-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661776
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661777
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 65656
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+17dupT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+17dupT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10238dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+17dupT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.247dupT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+17dupT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+17dupT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10238dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+17dupT
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22725
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5307
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

17-30661776-GAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661776
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661773
    reference: chr 17
allele count: 1
allele frequency: 1.523090045083465e-5
allele num: 65656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+15_734+17delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+15_734+17delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+15_197+17delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.245_247delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+15_710+17delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+15_197+17delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+15_105+17delTTT
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10236_95+10238delAAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10236_48+10238delAAA
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: GAAA
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-30661778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661778
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661778
    reference: chr 17
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.197+16T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10234A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.197+16T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.734+16T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.246T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.734+16T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10234A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.710+16T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.105+16T>C
  variant of: http://identifiers.org/hgnc/30173
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-30661803-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661803
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661803
    reference: chr 17
allele count: 2
allele frequency: 2.728364072901888e-5
allele num: 73304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10259T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.701A>T
  hgvsp: ENSP00000462127.1:p.Asp234Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.725A>T
  hgvsp: ENSP00000464275.1:p.Asp242Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.725A>T
  hgvsp: ENSP00000225805.4:p.Asp242Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.96A>T
  hgvsp: ENSP00000462873.1:p.Asp33Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10259T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.188A>T
  hgvsp: ENSP00000464759.1:p.Asp63Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.188A>T
  hgvsp: ENSP00000464845.1:p.Asp63Val
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.221A>T
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp242Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

17-30661806-CTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661806
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661802
    reference: chr 17
allele count: 1
allele frequency: 1.339943722363661e-5
allele num: 74630
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.718_721delAAGA
  hgvsp: ENSP00000464275.1:p.Lys240GlufsTer7
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.181_184delAAGA
  hgvsp: ENSP00000464845.1:p.Lys61GlufsTer7
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.89_92delAAGA
  hgvsp: ENSP00000462873.1:p.Lys31GlufsTer7
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.181_184delAAGA
  hgvsp: ENSP00000464759.1:p.Lys61GlufsTer7
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.718_721delAAGA
  hgvsp: ENSP00000225805.4:p.Lys240GlufsTer7
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10264_48+10267delCTTT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10264_95+10267delCTTT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.694_697delAAGA
  hgvsp: ENSP00000462127.1:p.Lys232GlufsTer7
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.214_217delAAGA
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9476
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys240GlufsTer7
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CTCTT
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-30661807-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661807
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661807
    reference: chr 17
allele count: 1
allele frequency: 1.330459540725367e-5
allele num: 75162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.92A>G
  hgvsp: ENSP00000462873.1:p.Arg32Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.184A>G
  hgvsp: ENSP00000464845.1:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.697A>G
  hgvsp: ENSP00000462127.1:p.Arg233Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.721A>G
  hgvsp: ENSP00000464275.1:p.Arg241Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.184A>G
  hgvsp: ENSP00000464759.1:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10263T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.721A>G
  hgvsp: ENSP00000225805.4:p.Arg241Gly
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.217A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10263T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17865
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24089
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg241Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-30661807-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661807
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661807
    reference: chr 17
allele count: 2
allele frequency: 2.660919081450733e-5
allele num: 75162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.92A>C
  hgvsp: ENST00000583104.1:c.92A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.184A>C
  hgvsp: ENST00000580558.1:c.184A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.697A>C
  hgvsp: ENST00000583774.1:c.697A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.217A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.721A>C
  hgvsp: ENST00000225805.4:c.721A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.184A>C
  hgvsp: ENST00000581747.1:c.184A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.721A>C
  hgvsp: ENST00000577809.1:c.721A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10263T>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10263T>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg241Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

17-30661810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661810
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661810
    reference: chr 17
allele count: 1
allele frequency: 1.303305181941403e-5
allele num: 76728
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.718A>G
  hgvsp: ENSP00000464275.1:p.Lys240Glu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.89A>G
  hgvsp: ENSP00000462873.1:p.Lys31Glu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.181A>G
  hgvsp: ENSP00000464759.1:p.Lys61Glu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10266T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.718A>G
  hgvsp: ENSP00000225805.4:p.Lys240Glu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.214A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*476A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.181A>G
  hgvsp: ENSP00000464845.1:p.Lys61Glu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10266T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.694A>G
  hgvsp: ENSP00000462127.1:p.Lys232Glu
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys240Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

17-30661819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661819
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661819
    reference: chr 17
allele count: 3
allele frequency: 3.723100598178163e-5
allele num: 80578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.172G>A
  hgvsp: ENSP00000464845.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.709G>A
  hgvsp: ENSP00000225805.4:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10275C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10275C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*467G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.205G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.80G>A
  hgvsp: ENSP00000462873.1:p.Glu28Lys
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.709G>A
  hgvsp: ENSP00000464275.1:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.172G>A
  hgvsp: ENSP00000464759.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.685G>A
  hgvsp: ENSP00000462127.1:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23074
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu237Lys
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-30661840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661840
    reference: chr 17
allele count: 1
allele frequency: 1.151569589350284e-5
allele num: 86838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.151G>A
  hgvsp: ENSP00000464759.1:p.Val51Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10296C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.688G>A
  hgvsp: ENSP00000225805.4:p.Val230Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*446G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.59G>A
  hgvsp: ENSP00000462873.1:p.Val21Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.151G>A
  hgvsp: ENSP00000464845.1:p.Val51Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.184G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10296C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.688G>A
  hgvsp: ENSP00000464275.1:p.Val230Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.664G>A
  hgvsp: ENSP00000462127.1:p.Val222Ile
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val230Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-30661844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661844
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661844
    reference: chr 17
allele count: 130
allele frequency: 1.494081140098839e-3
allele num: 87010
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10300A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.55T>C
  hgvsp: ENST00000583104.1:c.55T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.684T>C
  hgvsp: ENST00000577809.1:c.684T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10300A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*442T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.180T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.684T>C
  hgvsp: ENST00000225805.4:c.684T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.660T>C
  hgvsp: ENST00000583774.1:c.660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.147T>C
  hgvsp: ENST00000580558.1:c.147T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.147T>C
  hgvsp: ENST00000581747.1:c.147T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26196
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr228Thr
num of homozygotes: 2
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-30661849-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661849
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661849
    reference: chr 17
allele count: 13
allele frequency: 1.496385653114784e-4
allele num: 86876
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10305A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.655T>C
  hgvsp: ENSP00000462127.1:p.Tyr219His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.679T>C
  hgvsp: ENSP00000225805.4:p.Tyr227His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.50T>C
  hgvsp: ENSP00000462873.1:p.Tyr18His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.142T>C
  hgvsp: ENSP00000464759.1:p.Tyr48His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*437T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.142T>C
  hgvsp: ENSP00000464845.1:p.Tyr48His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.679T>C
  hgvsp: ENSP00000464275.1:p.Tyr227His
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10305A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.175T>C
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25292
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr227His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

17-30661861-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661861
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661861
    reference: chr 17
allele count: 1
allele frequency: 1.180553915897339e-5
allele num: 84706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.670-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.166-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10317A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10317A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.41-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.646-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.133-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.670-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.133-3T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*428-3T>C
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
hgvs: c.670-3T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-30661862-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661862
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661862
    reference: chr 17
allele count: 1
allele frequency: 1.180693303107585e-5
allele num: 84696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.670-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.41-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10318T>C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.670-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.133-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.133-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.646-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*428-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.166-4A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10318T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24258
  bin: 2.25e1
  variant carriers: 0
hgvs: c.670-4A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-30661869-A-ACTGGGCTGGTGGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661869
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661883
    reference: chr 17
allele count: 1
allele frequency: 1.196086405281918e-5
allele num: 83606
alternate allele: ACTGGGCTGGTGGGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26205
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-30661878-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661878
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661878
    reference: chr 17
allele count: 1
allele frequency: 1.224170012731368e-5
allele num: 81688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*428-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.41-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.670-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.166-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.133-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.646-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.133-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.670-20G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10334C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10334C>G
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10563
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-30661885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661885
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661885
    reference: chr 17
allele count: 1477
allele frequency: 1.838207840696951e-2
allele num: 80350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.41-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.646-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.133-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.670-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10341G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.670-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.133-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*428-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.166-27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10341G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 20487
  bin: 1.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 16611
  bin: 7.5e0
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 2.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 1.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 4305
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 18
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-30661891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661891
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661891
    reference: chr 17
allele count: 1
allele frequency: 1.287166945552838e-5
allele num: 77690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.166-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*428-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10347T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.133-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.670-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10347T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.646-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.41-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.670-33A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.133-33A>G
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20980
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-30661899-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30661899
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30661899
    reference: chr 17
allele count: 1
allele frequency: 1.371591594886706e-5
allele num: 72908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10355A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.670-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.133-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.670-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.133-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.646-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*428-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.166-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.41-41T>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10355A>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

17-30662294-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662294
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662294
    reference: chr 17
allele count: 1
allele frequency: 8.339170752860335e-6
allele num: 119916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10750C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+48G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10750C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+48G>C
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-30662296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662296
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662296
    reference: chr 17
allele count: 1054
allele frequency: 8.784797466244373e-3
allele num: 119980
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10752A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+46T>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10752A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 3.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 5.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 4.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 6.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 4.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 5.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 45
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-30662305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662305
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662305
    reference: chr 17
allele count: 4
allele frequency: 3.333555570371358e-5
allele num: 119992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10761C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+37G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10761C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-30662314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662314
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662314
    reference: chr 17
allele count: 1
allele frequency: 8.320159747067144e-6
allele num: 120190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10770G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10770G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+28C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+28C>T
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-30662315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662315
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662315
    reference: chr 17
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10771G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+27C>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10771G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+27C>T
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-30662319-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662319
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662319
    reference: chr 17
allele count: 2
allele frequency: 1.6627315353663e-5
allele num: 120284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10775T>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10775T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+23A>T
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+23A>T
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-30662321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662321
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662321
    reference: chr 17
allele count: 2
allele frequency: 1.66245511371193e-5
allele num: 120304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10777C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10777C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+21G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+21G>A
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-30662329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662329
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662329
    reference: chr 17
allele count: 9
allele frequency: 7.470367542083071e-5
allele num: 120476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+13A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10785T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10785T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

17-30662330-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662330
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662330
    reference: chr 17
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10786G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10786G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+12C>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+12C>G
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

17-30662332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662332
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662332
    reference: chr 17
allele count: 6
allele frequency: 4.978178982128338e-5
allele num: 120526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10788C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+10G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10788C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

17-30662335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662335
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662335
    reference: chr 17
allele count: 2
allele frequency: 1.658539821541115e-5
allele num: 120588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.132+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.669+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.165+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.132+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10791T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*427+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.669+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.40+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.645+7A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10791T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.669+7A>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-30662346-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662346
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662346
    reference: chr 17
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10802T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.128A>C
  hgvsp: ENSP00000464845.1:p.His43Pro
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.128A>C
  hgvsp: ENSP00000464759.1:p.His43Pro
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.665A>C
  hgvsp: ENSP00000464275.1:p.His222Pro
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.161A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10802T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.36A>C
  hgvsp: ENSP00000462873.1:p.His13Pro
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*423A>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.641A>C
  hgvsp: ENSP00000462127.1:p.His214Pro
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.665A>C
  hgvsp: ENSP00000225805.4:p.His222Pro
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His222Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

17-30662363-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662363
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662364
    reference: chr 17
allele count: 2
allele frequency: 1.656424442199069e-5
allele num: 120742
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.143dupA
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10823dupT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*405dupA
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.110dupA
  hgvsp: ENSP00000464759.1:p.Leu38AlafsTer15
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.647dupA
  hgvsp: ENSP00000464275.1:p.Leu217AlafsTer15
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.647dupA
  hgvsp: ENSP00000225805.4:p.Leu217AlafsTer15
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.623dupA
  hgvsp: ENSP00000462127.1:p.Leu209AlafsTer15
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10823dupT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462873
  ensembl transcript: ENST00000583104
  gene symbol: C17orf75
  hgvsc: ENST00000583104.1:c.18dupA
  hgvsp: ENSP00000462873.1:p.Leu8AlafsTer15
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.110dupA
  hgvsp: ENSP00000468451.1:p.Ter38AlafsTer?
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.110dupA
  hgvsp: ENSP00000464845.1:p.Leu38AlafsTer15
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu217AlafsTer15
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

17-30662386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662386
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662386
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10842C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.121G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.625G>A
  hgvsp: ENSP00000464275.1:p.Val209Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10842C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*383G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.88G>A
  hgvsp: ENSP00000464759.1:p.Val30Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.625G>A
  hgvsp: ENSP00000225805.4:p.Val209Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.601G>A
  hgvsp: ENSP00000462127.1:p.Val201Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.88G>A
  hgvsp: ENSP00000468451.1:p.Val30Ile
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.88G>A
  hgvsp: ENSP00000464845.1:p.Val30Ile
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val209Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

17-30662387-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662387
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662387
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.87G>C
  hgvsp: ENSP00000468451.1:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.624G>C
  hgvsp: ENSP00000464275.1:p.Arg208Ser
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.624G>C
  hgvsp: ENSP00000225805.4:p.Arg208Ser
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.600G>C
  hgvsp: ENSP00000462127.1:p.Arg200Ser
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*382G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10843C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10843C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.120G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.87G>C
  hgvsp: ENSP00000464845.1:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.87G>C
  hgvsp: ENSP00000464759.1:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg208Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

17-30662387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662387
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662387
    reference: chr 17
allele count: 2
allele frequency: 1.656177542232527e-5
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.87G>A
  hgvsp: ENST00000583334.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.624G>A
  hgvsp: ENST00000225805.4:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.87G>A
  hgvsp: ENST00000580558.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10843C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.87G>A
  hgvsp: ENST00000581747.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.600G>A
  hgvsp: ENST00000583774.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.624G>A
  hgvsp: ENST00000577809.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*382G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.120G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10843C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg208Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

17-30662390-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662390
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662390
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.621A>G
  hgvsp: ENST00000577809.1:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10846T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.621A>G
  hgvsp: ENST00000225805.4:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.84A>G
  hgvsp: ENST00000581747.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.117A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*379A>G
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.597A>G
  hgvsp: ENST00000583774.1:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.84A>G
  hgvsp: ENST00000583334.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10846T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.84A>G
  hgvsp: ENST00000580558.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln207Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-30662404-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662404
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662404
    reference: chr 17
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.70G>C
  hgvsp: ENSP00000468451.1:p.Val24Leu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.70G>C
  hgvsp: ENSP00000464845.1:p.Val24Leu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.103G>C
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10860C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.70G>C
  hgvsp: ENSP00000464759.1:p.Val24Leu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10860C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.607G>C
  hgvsp: ENSP00000225805.4:p.Val203Leu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.607G>C
  hgvsp: ENSP00000464275.1:p.Val203Leu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.583G>C
  hgvsp: ENSP00000462127.1:p.Val195Leu
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*365G>C
  variant of: http://identifiers.org/hgnc/30173
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val203Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-30662410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30662410
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 30662410
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000225805
  ensembl transcript: ENST00000225805
  gene symbol: C17orf75
  hgvsc: ENST00000225805.4:c.601G>A
  hgvsp: ENSP00000225805.4:p.Asp201Asn
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000462127
  ensembl transcript: ENST00000583774
  gene symbol: C17orf75
  hgvsc: ENST00000583774.1:c.577G>A
  hgvsp: ENSP00000462127.1:p.Asp193Asn
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464759
  ensembl transcript: ENST00000580558
  gene symbol: C17orf75
  hgvsc: ENST00000580558.1:c.64G>A
  hgvsp: ENSP00000464759.1:p.Asp22Asn
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464275
  ensembl transcript: ENST00000577809
  gene symbol: C17orf75
  hgvsc: ENST00000577809.1:c.601G>A
  hgvsp: ENSP00000464275.1:p.Asp201Asn
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000468451
  ensembl transcript: ENST00000583334
  gene symbol: C17orf75
  hgvsc: ENST00000583334.1:c.64G>A
  hgvsp: ENSP00000468451.1:p.Asp22Asn
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000578389
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000578389.1:n.48+10866C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000463184
  ensembl transcript: ENST00000583221
  gene symbol: C17orf75
  hgvsc: ENST00000583221.1:c.*359G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108666
  ensembl transcript: ENST00000578215
  gene symbol: C17orf75
  hgvsc: ENST00000578215.1:n.97G>A
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108666
  ensembl protein: ENSP00000464845
  ensembl transcript: ENST00000581747
  gene symbol: C17orf75
  hgvsc: ENST00000581747.1:c.64G>A
  hgvsp: ENSP00000464845.1:p.Asp22Asn
  variant of: http://identifiers.org/hgnc/30173
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265794
  ensembl transcript: ENST00000581915
  gene symbol: RP11-227G15.3
  hgvsc: ENST00000581915.1:n.95+10866C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp201Asn
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 4275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.257545271629779e-4
allele num: 7952
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52994
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 2.77e-1

InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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MQ
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FS
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 53288
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

East Asian
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allele frequency: 1.425313568985177e-4
allele num: 7016
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 53442
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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VQSLOD
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MQ
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QD
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DP
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InbreedingCoeff
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SIO_000300: -2.6e-3

MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 3.649e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5482
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African
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allele count: 0
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East Asian
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allele frequency: 1.260151218146177e-3
allele num: 7142
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Other
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VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
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variant carriers: 27

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 7
allele frequency: 1.266739051755338e-3
allele num: 5526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 21
allele frequency: 3.858591797736293e-4
allele num: 54424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.209482341557813e-4
allele num: 8268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

DP
type: SiteQuality
SIO_000300: 1.193186e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13094
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5706
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7460
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.765848490199541e-5
allele num: 56630
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 3.97561622051418e-4
allele num: 7546
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57514
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InbreedingCoeff
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FS
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.164e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele num: 8398
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Latino
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South Asian
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Other
type: Population
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BaseQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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DP
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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allele frequency: 3.448989446092295e-5
allele num: 57988
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Other
type: Population
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
type: Population
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Latino
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 1.196e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

DP
type: SiteQuality
SIO_000300: 1.281121e6

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.383222116301239e-4
allele num: 8392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.108401684770561e-4
allele num: 9022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.314751511964239e-4
allele num: 7606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.444356422002549e-5
allele num: 58066
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 1.279357e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.174e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.265329845975008e-5
allele num: 13764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58954
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.415e0

QD
type: SiteQuality
SIO_000300: 1.568e1

DP
type: SiteQuality
SIO_000300: 1.276665e6

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

VQSLOD
type: SiteQuality
SIO_000300: -2.094e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

GenotypeQuality
all individuals: 2670
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58922
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.256894049346879e-5
allele num: 13780
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

QD
type: SiteQuality
SIO_000300: 1.599e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

FS
type: SiteQuality
SIO_000300: 2.359e0

MQRankSum
type: SiteQuality
SIO_000300: -1.013e0

VQSLOD
type: SiteQuality
SIO_000300: -1.996e0

DP
type: SiteQuality
SIO_000300: 1.277981e6

GenotypeQuality
all individuals: 306
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.686283767832451e-5
allele num: 59302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

FS
type: SiteQuality
SIO_000300: 1.922e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.273157e6

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 700
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variant carriers: 0

GenotypeQuality
all individuals: 490
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GenotypeQuality
all individuals: 347
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 8.252770572978071e-4
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.026e0

DP
type: SiteQuality
SIO_000300: 1.274348e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.484e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 354
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variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.670564650851988e-4
allele num: 5986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.464e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

DP
type: SiteQuality
SIO_000300: 1.291407e6

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.901999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.29468e6

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

FS
type: SiteQuality
SIO_000300: 1.447e0

QD
type: SiteQuality
SIO_000300: 1.386e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.714e0

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 721
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.661074382910867e-5
allele num: 60202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.290914e6

QD
type: SiteQuality
SIO_000300: 1.235e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 4.857e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.322148765821733e-5
allele num: 60202
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

FS
type: SiteQuality
SIO_000300: 4.857e0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.290914e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.023947483002311e-5
allele num: 59714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.9e-1

MQ
type: SiteQuality
SIO_000300: 5.83e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.744e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e0

DP
type: SiteQuality
SIO_000300: 1.292561e6

FS
type: SiteQuality
SIO_000300: 2.42662e2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.068e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.317253310266818e-5
allele num: 60116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.297743e6

QD
type: SiteQuality
SIO_000300: 1.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26979
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.660302174995849e-5
allele num: 60230
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.583e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -4.99e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.07e-1

DP
type: SiteQuality
SIO_000300: 1.281209e6

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 671
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variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.009350788137857e-5
allele num: 59888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1197e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.250457e6

MQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.466e1

GenotypeQuality
all individuals: 4964
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 626
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 594
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variant carriers: 0

GenotypeQuality
all individuals: 6951
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variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682821755519655e-5
allele num: 59424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.927e0

FS
type: SiteQuality
SIO_000300: 1.446e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 5.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 1.1873e6

MQ
type: SiteQuality
SIO_000300: 4.818e1

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 697
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
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variant carriers: 0

GenotypeQuality
all individuals: 6951
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.2531328320802e-3
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682821755519655e-5
allele num: 59424
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.1873e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 1.446e0

MQRankSum
type: SiteQuality
SIO_000300: -2.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 4.818e1

QD
type: SiteQuality
SIO_000300: 5.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 5326
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.737498696875977e-5
allele num: 57554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.488392990864161e-5
allele num: 13354
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: -2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 3.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 3.555e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
SIO_000300: 1.13499e6

MQ
type: SiteQuality
SIO_000300: 5.788e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 62

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1467
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 7.958162801273306e-4
allele num: 8796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.744774400669994e-5
allele num: 57314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 53
allele frequency: 6.418018890772584e-3
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.427e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 1.133885e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20015
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6036
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GenotypeQuality
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GenotypeQuality
all individuals: 1500
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GenotypeQuality
all individuals: 3015
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 379
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variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4316
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.875117194824677e-4
allele num: 10666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.71856e5

VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 9.42e0

QD
type: SiteQuality
SIO_000300: 9.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4945
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.566735112936345e-4
allele num: 3896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 9.71536e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.969e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.523e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.03e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.103e0

GenotypeQuality
all individuals: 3012
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1200
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.610966057441253e-4
allele num: 3830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.697681043815167e-5
allele num: 35102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.475e0

VQSLOD
type: SiteQuality
SIO_000300: -2.921e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

DP
type: SiteQuality
SIO_000300: 9.74533e5

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 2981
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 323
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variant carriers: 1

GenotypeQuality
all individuals: 3010
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.852904256533151e-5
allele num: 35052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10676
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

DP
type: SiteQuality
SIO_000300: 9.77093e5

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

QD
type: SiteQuality
SIO_000300: 1.824e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2292
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7795
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variant carriers: 0

GenotypeQuality
all individuals: 23374
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.269558769002595e-5
allele num: 10788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

FS
type: SiteQuality
SIO_000300: 1.0108e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.374e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.226e0

QD
type: SiteQuality
SIO_000300: 1.193e1

DP
type: SiteQuality
SIO_000300: 1.009927e6

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeQuality
all individuals: 8213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 1

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.014312e6

GenotypeQuality
all individuals: 23683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5307
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35040
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.585791309863622e-4
allele num: 6306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10780
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 1.014312e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

FS
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 8996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.182736455463728e-5
allele num: 10890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.021557e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

FS
type: SiteQuality
SIO_000300: 1.965e0

QD
type: SiteQuality
SIO_000300: 6.32e0

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.919708029197081e-4
allele num: 6850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.141946e6

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

QD
type: SiteQuality
SIO_000300: 1.23e1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3011
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 491
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GenotypeQuality
all individuals: 1264
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GenotypeQuality
all individuals: 24236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.383635144198524e-5
allele num: 11928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39990
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

DP
type: SiteQuality
SIO_000300: 1.161646e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 465
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.480774001488464e-5
allele num: 40310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 1.166678e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.112e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.869440459110473e-4
allele num: 6970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 7.21e-1

DP
type: SiteQuality
SIO_000300: 1.166678e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.112e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.253549026081215e-5
allele num: 12116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

DP
type: SiteQuality
SIO_000300: 1.1879e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 5.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.857e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 716
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12438
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.179558011049724e-4
allele num: 5792
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

DP
type: SiteQuality
SIO_000300: 1.237655e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.849e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.76156473144986e-5
allele num: 12884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47100
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.302271e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.555e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.088e0

VQSLOD
type: SiteQuality
SIO_000300: -1.591e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 119

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5210
num of homozygotes: 0

South Asian
type: Population
allele count: 129
allele frequency: 9.984520123839009e-3
allele num: 12920
num of homozygotes: 2

Latino
type: Population
allele count: 1
allele frequency: 1.447596988998263e-4
allele num: 6908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

QD
type: SiteQuality
SIO_000300: 1.032e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.296644e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 449
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.711877798261786e-3
allele num: 7594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.288531e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.177415842877673e-5
allele num: 45926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 3.596e0

DP
type: SiteQuality
SIO_000300: 1.225906e6

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.340842048806651e-4
allele num: 7458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.157e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.554e1

QD
type: SiteQuality
SIO_000300: 7.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

FS
type: SiteQuality
SIO_000300: 1.909e0

DP
type: SiteQuality
SIO_000300: 1.226141e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.204585537918871e-5
allele num: 45360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.592e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e0

DP
type: SiteQuality
SIO_000300: 1.186161e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.15e0

MQ
type: SiteQuality
SIO_000300: 5.495e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.37438152831226e-4
allele num: 7276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

FS
type: SiteQuality
SIO_000300: 1.0152e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 3.407e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.256e0

DP
type: SiteQuality
SIO_000300: 1.11891e6

GenotypeQuality
all individuals: 27637
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 22

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 1420

GenotypeQuality
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variant carriers: 17

GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 212
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variant carriers: 11

Other
type: Population
allele count: 21
allele frequency: 3.322784810126582e-2
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 75
allele frequency: 6.225099601593625e-3
allele num: 12048
num of homozygotes: 1

Latino
type: Population
allele count: 96
allele frequency: 1.576872536136662e-2
allele num: 6088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 70
allele frequency: 1.448076127430699e-2
allele num: 4834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1006
allele frequency: 2.312537354604386e-2
allele num: 43502
num of homozygotes: 16

African
type: Population
allele count: 209
allele frequency: 2.904391328515842e-2
allele num: 7196
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 1.072293e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 679
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41950
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.737921445950643e-4
allele num: 5754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.623e0

DP
type: SiteQuality
SIO_000300: 1.016751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 3.07e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.557021581262146e-5
allele num: 39108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.032e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

FS
type: SiteQuality
SIO_000300: 3.027e0

DP
type: SiteQuality
SIO_000300: 9.81047e5

ClippingRankSum
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SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.576e1

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.797e0

VQSLOD
type: SiteQuality
SIO_000300: -1.3e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.211180124223603e-5
allele num: 16100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.622894e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
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FS
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 89
allele frequency: 7.705627705627706e-3
allele num: 11550
num of homozygotes: 3

African
type: Population
allele count: 10
allele frequency: 1.021450459652707e-3
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 2.290170834364942e-3
allele num: 16156
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 5.722891566265061e-4
allele num: 66400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 8.771929824561403e-3
allele num: 6612
num of homozygotes: 1

Other
type: Population
allele count: 7
allele frequency: 7.882882882882882e-3
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 815
allele frequency: 9.494408201304753e-2
allele num: 8584
num of homozygotes: 40

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.598e0

QD
type: SiteQuality
SIO_000300: 1.472e1

DP
type: SiteQuality
SIO_000300: 2.631189e6

VQSLOD
type: SiteQuality
SIO_000300: 6.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
all individuals: 3780
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9613
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variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29097
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2049
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.023733510029516e-5
allele num: 66404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.636436e6

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.233e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
all individuals: 2043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.388e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.646583e6

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e0

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 4073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 3671
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 29100
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10871
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 4.767e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.618e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 2.647842e6

GenotypeQuality
all individuals: 3676
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 3563
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variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.247e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.65033e6

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

FS
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3677
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 2051
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.033e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 2.652204e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 29103
bin: 9.75e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11490
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 3690
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.351473105685197e-4
allele num: 66594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.589e1

DP
type: SiteQuality
SIO_000300: 2.656684e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.024e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3778
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66610
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African
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allele frequency: 6.12619971411068e-4
allele num: 9794
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BaseQRankSum
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FS
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SIO_000300: 8.01e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
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SIO_000300: 1.354e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 2.658311e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001380635092142e-5
allele num: 66636
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16490
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
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SIO_000300: -4.9e-2

DP
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SIO_000300: 2.661486e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 7.0e-4

ReadPosRankSum
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SIO_000300: -1.272e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.212e1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
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SIO_000300: 2.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.662826e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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allele num: 16512
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66734
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South Asian
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Other
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Latino
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East Asian
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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QD
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.75e0

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

DP
type: SiteQuality
SIO_000300: 2.663073e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.391e0

MQ
type: SiteQuality
SIO_000300: 5.991e1