19-55285012-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285012
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285012
    reference: chr 19
allele count: 2
allele frequency: 1.695978834184149e-5
allele num: 117926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30334T>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.298T>G
  hgvsp: ENSP00000291633.7:p.Cys100Gly
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43977T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43977T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.298T>G
  hgvsp: ENSP00000336769.5:p.Cys100Gly
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2676T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43977T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9362T>G
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys100Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-55285015-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285015
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285015
    reference: chr 19
allele count: 1
allele frequency: 8.480181815098116e-6
allele num: 117922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43974T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.301T>C
  hgvsp: ENSP00000291633.7:p.Tyr101His
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30331T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9359T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.301T>C
  hgvsp: ENSP00000336769.5:p.Tyr101His
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43974T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2679T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43974T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr101His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

19-55285017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285017
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285017
    reference: chr 19
allele count: 1
allele frequency: 8.48032564450475e-6
allele num: 117920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.303C>T
  hgvsp: ENST00000291633.7:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43972C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43972C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30329C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2681C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43972C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.303C>T
  hgvsp: ENST00000336077.6:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9357C>T
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35688
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr101Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

19-55285018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285018
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285018
    reference: chr 19
allele count: 8
allele frequency: 6.783915336736598e-5
allele num: 117926
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.304G>A
  hgvsp: ENSP00000336769.5:p.Gly102Ser
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43971G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2682G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9356G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43971G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.304G>A
  hgvsp: ENSP00000291633.7:p.Gly102Ser
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30328G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43971G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5900
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly102Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-55285019-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285019
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285019
    reference: chr 19
allele count: 1
allele frequency: 8.479606546256254e-6
allele num: 117930
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2683G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9355G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30327G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.305G>A
  hgvsp: ENSP00000336769.5:p.Gly102Asp
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43970G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.305G>A
  hgvsp: ENSP00000291633.7:p.Gly102Asp
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43970G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43970G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5901
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly102Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-55285027-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285027
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285027
    reference: chr 19
allele count: 7
allele frequency: 5.938040785857283e-5
allele num: 117884
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2691A>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.313A>C
  hgvsp: ENSP00000336769.5:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30319A>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43962A>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43962A>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.313A>C
  hgvsp: ENSP00000291633.7:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9347A>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43962A>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr105Pro
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-55285031-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285031
    reference: chr 19
allele count: 2
allele frequency: 1.696266517395213e-5
allele num: 117906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43958A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.317A>G
  hgvsp: ENSP00000291633.7:p.His106Arg
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2695A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9343A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.317A>G
  hgvsp: ENSP00000336769.5:p.His106Arg
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43958A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43958A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30315A>G
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His106Arg
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

19-55285033-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285033
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285033
    reference: chr 19
allele count: 3
allele frequency: 2.544486098624281e-5
allele num: 117902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.319T>A
  hgvsp: ENSP00000291633.7:p.Ser107Thr
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2697T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43956T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.319T>A
  hgvsp: ENSP00000336769.5:p.Ser107Thr
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43956T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30313T>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9341T>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43956T>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser107Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-55285035-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285035
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285035
    reference: chr 19
allele count: 1
allele frequency: 8.48147645542136e-6
allele num: 117904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.321C>G
  hgvsp: ENST00000291633.7:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.321C>G
  hgvsp: ENST00000336077.6:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43954C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30311C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43954C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2699C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9339C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43954C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5908
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser107Ser
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

19-55285036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285036
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285036
    reference: chr 19
allele count: 1
allele frequency: 8.481188723411473e-6
allele num: 117908
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2700C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.322C>G
  hgvsp: ENSP00000336769.5:p.Pro108Ala
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43953C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43953C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9338C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30310C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43953C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.322C>G
  hgvsp: ENSP00000291633.7:p.Pro108Ala
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35603
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro108Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

19-55285038-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285038
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285038
    reference: chr 19
allele count: 1
allele frequency: 8.481620328747603e-6
allele num: 117902
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2702C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43951C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43951C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9336C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43951C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.324C>G
  hgvsp: ENST00000336077.6:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30308C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.324C>G
  hgvsp: ENST00000291633.7:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5910
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro108Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

19-55285040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285040
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285040
    reference: chr 19
allele count: 3
allele frequency: 2.544874622510264e-5
allele num: 117884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9334A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30306A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2704A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.326A>G
  hgvsp: ENSP00000336769.5:p.Tyr109Cys
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43949A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.326A>G
  hgvsp: ENSP00000291633.7:p.Tyr109Cys
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43949A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43949A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr109Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-55285044-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285044
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285044
    reference: chr 19
allele count: 1
allele frequency: 8.484210883545722e-6
allele num: 117866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43945G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.330G>C
  hgvsp: ENSP00000291633.7:p.Gln110His
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.330G>C
  hgvsp: ENSP00000336769.5:p.Gln110His
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30302G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43945G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9330G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43945G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2708G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8166
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln110His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-55285045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285045
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285045
    reference: chr 19
allele count: 2
allele frequency: 1.696957355461657e-5
allele num: 117858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43944G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30301G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43944G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43944G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2709G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9329G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.331G>A
  hgvsp: ENSP00000336769.5:p.Val111Met
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.331G>A
  hgvsp: ENSP00000291633.7:p.Val111Met
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 31603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val111Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

19-55285045-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285045
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285045
    reference: chr 19
allele count: 17
allele frequency: 1.442413752142409e-4
allele num: 117858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.331G>T
  hgvsp: ENSP00000291633.7:p.Val111Leu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.331G>T
  hgvsp: ENSP00000336769.5:p.Val111Leu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43944G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30301G>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43944G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43944G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9329G>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2709G>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val111Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-55285047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285047
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285047
    reference: chr 19
allele count: 1
allele frequency: 8.485794779539051e-6
allele num: 117844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9327G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2711G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43942G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43942G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.333G>A
  hgvsp: ENST00000291633.7:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30299G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.333G>A
  hgvsp: ENST00000336077.6:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43942G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val111Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

19-55285047-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285047
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285047
    reference: chr 19
allele count: 2
allele frequency: 1.69715895590781e-5
allele num: 117844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43942G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2711G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.333G>T
  hgvsp: ENST00000291633.7:c.333G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.333G>T
  hgvsp: ENST00000336077.6:c.333G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9327G>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43942G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30299G>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43942G>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val111Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55285051-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285051
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285051
    reference: chr 19
allele count: 10
allele frequency: 8.488964346349746e-5
allele num: 117800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.337G>C
  hgvsp: ENSP00000291633.7:p.Ala113Pro
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.337G>C
  hgvsp: ENSP00000336769.5:p.Ala113Pro
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30295G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43938G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2715G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43938G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43938G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9323G>C
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala113Pro
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-55285052-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285052
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285051
    reference: chr 19
allele count: 2
allele frequency: 1.698052333972933e-5
allele num: 117782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.339delT
  hgvsp: ENSP00000291633.7:p.Ser115ValfsTer7
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43936delT
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30293delT
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43936delT
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43936delT
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.339delT
  hgvsp: ENSP00000336769.5:p.Ser115ValfsTer7
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9321delT
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2717delT
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31480
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser115ValfsTer7
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: CT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

19-55285055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285055
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285055
    reference: chr 19
allele count: 1
allele frequency: 8.492280517010038e-6
allele num: 117754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.341C>T
  hgvsp: ENSP00000336769.5:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9319C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43934C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43934C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.341C>T
  hgvsp: ENSP00000291633.7:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43934C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30291C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2719C>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5938
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro114Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

19-55285057-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285057
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285057
    reference: chr 19
allele count: 5
allele frequency: 4.247150162241136e-5
allele num: 117726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30289A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9317A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.343A>G
  hgvsp: ENSP00000291633.7:p.Ser115Gly
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2721A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.343A>G
  hgvsp: ENSP00000336769.5:p.Ser115Gly
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43932A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43932A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43932A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser115Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/19-55285057-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285057
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285057
    reference: chr 19
allele count: 2
allele frequency: 1.698860064896454e-5
allele num: 117726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43932A>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.343A>C
  hgvsp: ENSP00000336769.5:p.Ser115Arg
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43932A>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30289A>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.343A>C
  hgvsp: ENSP00000291633.7:p.Ser115Arg
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9317A>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2721A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43932A>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser115Arg
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

19-55285058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285058
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285058
    reference: chr 19
allele count: 1
allele frequency: 8.496465470364328e-6
allele num: 117696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.344G>A
  hgvsp: ENSP00000336769.5:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43931G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2722G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43931G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9316G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30288G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.344G>A
  hgvsp: ENSP00000291633.7:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43931G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser115Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-55285059-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285059
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285059
    reference: chr 19
allele count: 3
allele frequency: 2.54902627196411e-5
allele num: 117692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9315T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.345T>C
  hgvsp: ENST00000336077.6:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30287T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43930T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2723T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43930T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43930T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.345T>C
  hgvsp: ENST00000291633.7:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser115Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

19-55285067-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285067
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285067
    reference: chr 19
allele count: 1
allele frequency: 8.509189925119129e-6
allele num: 117520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43922T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30279T>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.353T>G
  hgvsp: ENSP00000291633.7:p.Leu118Arg
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.353T>G
  hgvsp: ENSP00000336769.5:p.Leu118Arg
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2731T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43922T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43922T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9307T>G
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31122
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu118Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/19-55285071-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285071
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285071
    reference: chr 19
allele count: 1
allele frequency: 8.521952549768203e-6
allele num: 117344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43918C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9303C>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.357C>A
  hgvsp: ENSP00000291633.7:p.Asp119Glu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2735C>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.357C>A
  hgvsp: ENSP00000336769.5:p.Asp119Glu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43918C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30275C>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43918C>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5943
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp119Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

19-55285072-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285072
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285072
    reference: chr 19
allele count: 1927
allele frequency: 1.642208245981831e-2
allele num: 117342
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2736A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30274A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43917A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43917A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9302A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43917A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.358A>G
  hgvsp: ENSP00000336769.5:p.Ile120Val
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.358A>G
  hgvsp: ENSP00000291633.7:p.Ile120Val
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13467
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 29751
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1357
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 33586
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile120Val
num of homozygotes: 275
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

19-55285073-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285073
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285073
    reference: chr 19
allele count: 1
allele frequency: 8.522824123001398e-6
allele num: 117332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43916T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.359T>C
  hgvsp: ENSP00000291633.7:p.Ile120Thr
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43916T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9301T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.359T>C
  hgvsp: ENSP00000336769.5:p.Ile120Thr
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43916T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30273T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2737T>C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile120Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

19-55285074-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285074
    reference: chr 19
allele count: 1
allele frequency: 8.52747552614524e-6
allele num: 117268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43915C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.360C>G
  hgvsp: ENSP00000336769.5:p.Ile120Met
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9300C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.360C>G
  hgvsp: ENSP00000291633.7:p.Ile120Met
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2738C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43915C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30272C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43915C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6764
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile120Met
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55285074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285074
    reference: chr 19
allele count: 1
allele frequency: 8.52747552614524e-6
allele num: 117268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43915C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43915C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9300C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30272C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43915C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.360C>T
  hgvsp: ENST00000291633.7:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2738C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.360C>T
  hgvsp: ENST00000336077.6:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6764
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8017
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile120Ile
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

19-55290131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55290131
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55290131
    reference: chr 19
allele count: 1
allele frequency: 9.258744884543451e-6
allele num: 108006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-38858C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-38858C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.72-7784C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-38858C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.715+17C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-4243C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-25215C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.715+17C>T
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-55285075-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285075
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285075
    reference: chr 19
allele count: 3
allele frequency: 2.564102564102564e-5
allele num: 117000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43914G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.361G>A
  hgvsp: ENSP00000336769.5:p.Val121Met
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2739G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30271G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9299G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.361G>A
  hgvsp: ENSP00000291633.7:p.Val121Met
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43914G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43914G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val121Met
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

19-55285077-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285077
    reference: chr 19
allele count: 10
allele frequency: 8.546716351577724e-5
allele num: 117004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9297G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43912G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.363G>C
  hgvsp: ENST00000336077.6:c.363G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43912G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.363G>C
  hgvsp: ENST00000291633.7:c.363G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43912G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30269G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2741G>C
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val121Val
num of homozygotes: 1
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-55285078-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285078
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285078
    reference: chr 19
allele count: 2
allele frequency: 1.709343270315545e-5
allele num: 117004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43911A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9296A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30268A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43911A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2742A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.364A>G
  hgvsp: ENSP00000291633.7:p.Ile122Val
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.364A>G
  hgvsp: ENSP00000336769.5:p.Ile122Val
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43911A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6772
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile122Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-55285081-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285081
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285081
    reference: chr 19
allele count: 9
allele frequency: 7.70191863350848e-5
allele num: 116854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43908A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.367A>G
  hgvsp: ENSP00000336769.5:p.Ile123Val
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9293A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43908A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2745A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.367A>G
  hgvsp: ENSP00000291633.7:p.Ile123Val
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30265A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43908A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile123Val
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

19-55285082-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285082
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285082
    reference: chr 19
allele count: 10
allele frequency: 8.576623554838931e-5
allele num: 116596
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2746T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43907T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43907T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30264T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.368T>C
  hgvsp: ENSP00000336769.5:p.Ile123Thr
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9292T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43907T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.368T>C
  hgvsp: ENSP00000291633.7:p.Ile123Thr
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile123Thr
num of homozygotes: 1
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-55285083-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285083
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285082
    reference: chr 19
allele count: 1
allele frequency: 8.576476440419219e-6
allele num: 116598
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+1delG
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30261delG
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2749delG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43904delG
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9289delG
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+1delG
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43904delG
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43904delG
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: AG
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-55285087-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285087
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285087
    reference: chr 19
allele count: 5
allele frequency: 4.310419145157675e-5
allele num: 115998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43902G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9287G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30259G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43902G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+3G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43902G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2751G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+3G>A
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6778
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
hgvs: c.370+3G>A
num of homozygotes: 1
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

19-55285099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285099
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285099
    reference: chr 19
allele count: 2
allele frequency: 1.74797671695013e-5
allele num: 114418
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2763A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30247A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43890A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+15A>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+15A>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43890A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43890A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9275A>G
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

19-55285100-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285100
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285100
    reference: chr 19
allele count: 1
allele frequency: 8.757487651942411e-6
allele num: 114188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43889C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9274C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2764C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43889C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+16C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+16C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43889C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30246C>T
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

19-55285101-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285101
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285101
    reference: chr 19
allele count: 2
allele frequency: 1.760935408889202e-5
allele num: 113576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43888T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43888T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+17T>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9273T>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2765T>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+17T>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43888T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30245T>A
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-55285108-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285108
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285108
    reference: chr 19
allele count: 1
allele frequency: 8.905988386591144e-6
allele num: 112284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9266T>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2772T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43881T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43881T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+24T>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+24T>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30238T>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43881T>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-55285112-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285112
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285112
    reference: chr 19
allele count: 1
allele frequency: 8.930485103950847e-6
allele num: 111976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+28T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9262T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+28T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43877T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2776T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43877T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43877T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30234T>C
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

19-55285117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285117
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285117
    reference: chr 19
allele count: 1
allele frequency: 8.969253399347038e-6
allele num: 111492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43872T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9257T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+33T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30229T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43872T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2781T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43872T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+33T>C
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7250
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

19-55285118-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285118
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285118
    reference: chr 19
allele count: 3
allele frequency: 2.693288325492872e-5
allele num: 111388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2782T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43871T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43871T>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+34T>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+34T>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9256T>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30228T>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43871T>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-55285119-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285119
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285119
    reference: chr 19
allele count: 1
allele frequency: 8.996203602079921e-6
allele num: 111158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43870G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+35G>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9255G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43870G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2783G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43870G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+35G>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30227G>C
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7227
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-55285121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285121
    reference: chr 19
allele count: 1
allele frequency: 9.04093736438594e-6
allele num: 110608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43868G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+37G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43868G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2785G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9253G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+37G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43868G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30225G>A
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

19-55285121-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285121
    reference: chr 19
allele count: 2
allele frequency: 1.808187472877188e-5
allele num: 110608
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2785G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43868G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+37G>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43868G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43868G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+37G>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9253G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30225G>C
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-55285124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285124
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285124
    reference: chr 19
allele count: 1
allele frequency: 9.059448098421843e-6
allele num: 110382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43865G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2788G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+40G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+40G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30222G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9250G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43865G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43865G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

19-55285129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285129
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285129
    reference: chr 19
allele count: 1
allele frequency: 9.226624347216328e-6
allele num: 108382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+45G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2793G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43860G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43860G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43860G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30217G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9245G>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+45G>A
  variant of: http://identifiers.org/hgnc/6329
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-55285130-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285130
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285130
    reference: chr 19
allele count: 21
allele frequency: 1.948413434774541e-4
allele num: 107780
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2794T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9244T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+46T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43859T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43859T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43859T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+46T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30216T>C
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-55285134-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55285134
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55285134
    reference: chr 19
allele count: 3
allele frequency: 2.873618268549206e-5
allele num: 104398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-43855T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.370+50T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-9240T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-43855T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-43855T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.370+50T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-30212T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+2798T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

19-55286572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286572
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286572
    reference: chr 19
allele count: 2
allele frequency: 1.988269211651258e-5
allele num: 100590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42417G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28774G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42417G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-45G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-45G>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42417G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4236G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7802G>A
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

19-55286577-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286577
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286577
    reference: chr 19
allele count: 33
allele frequency: 3.283190066857688e-4
allele num: 100512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-40A>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42412A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42412A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7797A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-40A>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4241A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42412A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28769A>G
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 8480
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 2.25e1
  variant carriers: 15
num of homozygotes: 9
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/19-55286598-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286598
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286598
    reference: chr 19
allele count: 3
allele frequency: 2.966126831583318e-5
allele num: 101142
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-19C>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7776C>A
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42391C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28748C>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-19C>A
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4262C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42391C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42391C>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28698
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-55286598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286598
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286598
    reference: chr 19
allele count: 1
allele frequency: 9.887089438611062e-6
allele num: 101142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-19C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28748C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4262C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7776C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42391C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42391C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-19C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42391C>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28698
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

19-55286603-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286603
    reference: chr 19
allele count: 78
allele frequency: 7.699293244363722e-4
allele num: 101308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42386T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4267T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28743T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-14T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42386T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7771T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-14T>C
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42386T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 14
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-55286609-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286609
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286609
    reference: chr 19
allele count: 1
allele frequency: 9.855129594954174e-6
allele num: 101470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28737C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-8C>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4273C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7765C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42380C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42380C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-8C>G
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42380C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.75e1
  variant carriers: 0
hgvs: c.371-8C>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

19-55286609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286609
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286609
    reference: chr 19
allele count: 3
allele frequency: 2.956538878486252e-5
allele num: 101470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42380C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-8C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42380C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7765C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42380C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4273C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-8C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28737C>T
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
hgvs: c.371-8C>T
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-55286610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286610
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286610
    reference: chr 19
allele count: 1
allele frequency: 9.841938468200698e-6
allele num: 101606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42379C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42379C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42379C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.371-7C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28736C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.371-7C>T
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7764C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4274C>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
hgvs: c.371-7C>T
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

19-55286625-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286625
    reference: chr 19
allele count: 6
allele frequency: 5.828638041577618e-5
allele num: 102940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42364G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4289G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.379G>C
  hgvsp: ENSP00000336769.5:p.Glu127Gln
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42364G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28721G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.379G>C
  hgvsp: ENSP00000291633.7:p.Glu127Gln
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7749G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42364G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu127Gln
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55286626-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286626
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286626
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 103038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7748A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42363A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28720A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4290A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.380A>G
  hgvsp: ENSP00000336769.5:p.Glu127Gly
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42363A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.380A>G
  hgvsp: ENSP00000291633.7:p.Glu127Gly
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42363A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu127Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

19-55286627-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286627
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286627
    reference: chr 19
allele count: 6
allele frequency: 5.819141094774411e-5
allele num: 103108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.381G>C
  hgvsp: ENSP00000291633.7:p.Glu127Asp
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42362G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.381G>C
  hgvsp: ENSP00000336769.5:p.Glu127Asp
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42362G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28719G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7747G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4291G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42362G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28678
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu127Asp
num of homozygotes: 1
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-55286628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286628
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286628
    reference: chr 19
allele count: 1
allele frequency: 9.688420399937994e-6
allele num: 103216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.382A>G
  hgvsp: ENSP00000336769.5:p.Lys128Glu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.382A>G
  hgvsp: ENSP00000291633.7:p.Lys128Glu
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42361A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42361A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28718A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42361A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7746A>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4292A>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys128Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

19-55286631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286631
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286631
    reference: chr 19
allele count: 2
allele frequency: 1.933749734109411e-5
allele num: 103426
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4295C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.385C>T
  hgvsp: ENSP00000291633.7:p.Pro129Ser
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28715C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42358C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42358C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.385C>T
  hgvsp: ENSP00000336769.5:p.Pro129Ser
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42358C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7743C>T
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10050
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro129Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-55286631-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286631
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286628
    reference: chr 19
allele count: 5
allele frequency: 4.834374335273529e-5
allele num: 103426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42355_35-42353delTCT
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28712_35-28710delTCT
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.388_390delTCT
  hgvsp: ENSP00000336769.5:p.Ser130del
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42355_35-42353delTCT
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42355_35-42353delTCT
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.388_390delTCT
  hgvsp: ENSP00000291633.7:p.Ser130del
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4298_71+4300delTCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7740_716-7738delTCT
  variant of: http://identifiers.org/hgnc/6331
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28679
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser130del
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CCTT
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-55286635-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286635
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286635
    reference: chr 19
allele count: 1
allele frequency: 9.635025243766138e-6
allele num: 103788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28711C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.389C>G
  hgvsp: ENSP00000291633.7:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42354C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4299C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42354C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7739C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.389C>G
  hgvsp: ENSP00000336769.5:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42354C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28677
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser130Cys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-55286639-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286639
    reference: chr 19
allele count: 1
allele frequency: 9.603564843269821e-6
allele num: 104128
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4303C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42350C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42350C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.393C>G
  hgvsp: ENST00000291633.7:c.393C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.393C>G
  hgvsp: ENST00000336077.6:c.393C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42350C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7735C>G
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28707C>G
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu131Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-55286639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286639
    reference: chr 19
allele count: 1
allele frequency: 9.603564843269821e-6
allele num: 104128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.393C>T
  hgvsp: ENST00000291633.7:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42350C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28707C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.393C>T
  hgvsp: ENST00000336077.6:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4303C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42350C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7735C>T
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42350C>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu131Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-55286650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286650
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286650
    reference: chr 19
allele count: 32705
allele frequency: 3.145739953446319e-1
allele num: 103966
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4314T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28696T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.404T>C
  hgvsp: ENSP00000336769.5:p.Leu135Pro
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42339T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42339T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7724T>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.404T>C
  hgvsp: ENSP00000291633.7:p.Leu135Pro
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42339T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 3.75e1
  variant carriers: 1310
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 491
genotype depth: GenotypeDepth
  all individuals: 5771
  bin: 2.25e1
  variant carriers: 1690
genotype depth: GenotypeDepth
  all individuals: 10509
  bin: 9.75e1
  variant carriers: 9139
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.25e1
  variant carriers: 1607
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 5.75e1
  variant carriers: 608
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 899
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.25e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 2.75e1
  variant carriers: 1801
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.75e1
  variant carriers: 1209
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.25e1
  variant carriers: 691
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.5e0
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 6.25e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 4.75e1
  variant carriers: 827
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 4.25e1
  variant carriers: 925
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 7.75e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 8.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 8.25e1
  variant carriers: 320
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 2.5e0
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.75e1
  variant carriers: 568
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 413
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.75e1
  variant carriers: 530
genotype quality: GenotypeQuality
  all individuals: 30006
  bin: 9.75e1
  variant carriers: 15371
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.25e1
  variant carriers: 569
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 9.25e1
  variant carriers: 503
hgvs: p.Leu135Pro
num of homozygotes: 10274
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-55286651-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55286651
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55286651
    reference: chr 19
allele count: 1
allele frequency: 9.401677259223045e-6
allele num: 106364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.35-42338G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243772
  ensembl protein: ENSP00000415758
  ensembl transcript: ENST00000434419
  gene symbol: KIR2DL3
  hgvsc: ENST00000434419.2:c.716-7723G>C
  variant of: http://identifiers.org/hgnc/6331
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.71+4315G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000291633
  ensembl transcript: ENST00000291633
  gene symbol: KIR2DL1
  hgvsc: ENST00000291633.7:c.405G>C
  hgvsp: ENST00000291633.7:c.405G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125498
  ensembl protein: ENSP00000336769
  ensembl transcript: ENST00000336077
  gene symbol: KIR2DL1
  hgvsc: ENST00000336077.6:c.405G>C
  hgvsp: ENST00000336077.6:c.405G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6329
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.35-28695G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.35-42338G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.35-42338G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu135Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10234
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.775252973548731e-4
allele num: 11266
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64602
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South Asian
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
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allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8566
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European (Non-Finnish)
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allele frequency: 1.548179341094872e-5
allele num: 64592
num of homozygotes: 0

QD
type: SiteQuality
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DP
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BaseQRankSum
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SIO_000300: -2.618e0

MQRankSum
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SIO_000300: -9.06e-1

VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

FS
type: SiteQuality
SIO_000300: 6.242e0

MQ
type: SiteQuality
SIO_000300: 4.648e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 4.675810473815461e-4
allele num: 6416
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.740896705474362e-5
allele num: 64592
num of homozygotes: 0

South Asian
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FS
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
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SIO_000300: 2.0e-3

BaseQRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 4.651e1

VQSLOD
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ReadPosRankSum
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SIO_000300: 7.25e-1

MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.359e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 1.167406023815083e-4
allele num: 8566
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Non-Finnish)
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allele num: 64566
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African
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allele frequency: 9.780907668231612e-5
allele num: 10224
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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East Asian
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allele num: 8564
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MQ
type: SiteQuality
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QD
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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MQ
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ClippingRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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Latino
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African
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East Asian
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MQRankSum
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DP
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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MQ
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FS
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.265664160401002e-5
allele num: 15960
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.823e0

QD
type: SiteQuality
SIO_000300: 1.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

MQ
type: SiteQuality
SIO_000300: 4.781e1

DP
type: SiteQuality
SIO_000300: 1.72164e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.2672348959639e-5
allele num: 15956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 4.769e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.721699e6

QD
type: SiteQuality
SIO_000300: 1.074e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.87e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15952
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.645401052957572e-5
allele num: 64580
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 4.649e1

VQSLOD
type: SiteQuality
SIO_000300: -1.174e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.722118e6

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 4.509e1

VQSLOD
type: SiteQuality
SIO_000300: -2.448e0

DP
type: SiteQuality
SIO_000300: 1.721458e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 6.846e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.325e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548754801139884e-5
allele num: 64568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.272738677706687e-5
allele num: 15942
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.139e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.827e0

QD
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.96e-2

MQ
type: SiteQuality
SIO_000300: 4.414e1

FS
type: SiteQuality
SIO_000300: 4.5039e1

DP
type: SiteQuality
SIO_000300: 1.725106e6

VQSLOD
type: SiteQuality
SIO_000300: -1.41e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5931
bin: 9.75e1
variant carriers: 16

African
type: Population
allele count: 5
allele frequency: 4.889497359671426e-4
allele num: 10226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.254547735541337e-4
allele num: 15942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.548754801139883e-4
allele num: 64568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.414e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.139e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 4.5039e1

VQSLOD
type: SiteQuality
SIO_000300: -1.41e1

QD
type: SiteQuality
SIO_000300: 2.62e0

DP
type: SiteQuality
SIO_000300: 1.725106e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.96e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.827e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.38e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

ReadPosRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64566
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.549330689142291e-4
allele num: 64544
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
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Latino
type: Population
allele count: 0
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East Asian
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Other
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South Asian
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allele num: 15920
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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FS
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.550243388211949e-5
allele num: 64506
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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East Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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FS
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6416
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.101159833777833e-5
allele num: 64492
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Other
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ReadPosRankSum
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QD
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64480
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8556
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Other
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South Asian
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African
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Latino
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQ
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QD
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11262
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Other
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South Asian
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African
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allele frequency: 2.934846409704559e-4
allele num: 10222
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64474
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 15814
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European (Finnish)
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Latino
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African
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Other
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European (Non-Finnish)
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East Asian
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QD
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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East Asian
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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allele frequency: 7.43045852915026e-3
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Latino
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allele frequency: 1.865671641791045e-2
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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QD
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SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.775721e6

VQSLOD
type: SiteQuality
SIO_000300: -2.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.09e0

FS
type: SiteQuality
SIO_000300: 7.434e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 4.202e1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556323341737479e-5
allele num: 64254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

MQRankSum
type: SiteQuality
SIO_000300: -2.813e0

MQ
type: SiteQuality
SIO_000300: 4.171e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.402e0

VQSLOD
type: SiteQuality
SIO_000300: -4.029e0

FS
type: SiteQuality
SIO_000300: 1.2178e1

DP
type: SiteQuality
SIO_000300: 1.775215e6

QD
type: SiteQuality
SIO_000300: 7.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556323341737479e-5
allele num: 64254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.402e0

VQSLOD
type: SiteQuality
SIO_000300: -4.029e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 1.2178e1

MQRankSum
type: SiteQuality
SIO_000300: -2.813e0

DP
type: SiteQuality
SIO_000300: 1.775215e6

QD
type: SiteQuality
SIO_000300: 7.52e0

MQ
type: SiteQuality
SIO_000300: 4.171e1

GenotypeQuality
all individuals: 764
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678190239645566e-5
allele num: 59588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 4.462e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 1.522e0

MQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.792e1

DP
type: SiteQuality
SIO_000300: 4.350636e6

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6764
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.919877127863817e-4
allele num: 15626
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.287e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -2.656e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

QD
type: SiteQuality
SIO_000300: 1.552e1

FS
type: SiteQuality
SIO_000300: 4.592e0

DP
type: SiteQuality
SIO_000300: 1.768225e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.7e0

GenotypeQuality
all individuals: 1933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6771
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variant carriers: 9

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 7904
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 6.892477353288697e-4
allele num: 10156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64142
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.666192676857448e-4
allele num: 11252
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 4.157e1

QD
type: SiteQuality
SIO_000300: 5.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.435e0

VQSLOD
type: SiteQuality
SIO_000300: -7.41e0

DP
type: SiteQuality
SIO_000300: 1.76944e6

FS
type: SiteQuality
SIO_000300: 1.1955e1

MQRankSum
type: SiteQuality
SIO_000300: -4.309e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
all individuals: 962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33427
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
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variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.970055161544523e-4
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.392e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

MQ
type: SiteQuality
SIO_000300: 4.339e1

QD
type: SiteQuality
SIO_000300: 1.591e1

DP
type: SiteQuality
SIO_000300: 1.769285e6

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.516e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 30
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 2205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.802990105808545e-5
allele num: 64078
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 2.666666666666667e-4
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

FS
type: SiteQuality
SIO_000300: 2.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.202e0

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

QD
type: SiteQuality
SIO_000300: 1.81e1

MQ
type: SiteQuality
SIO_000300: 4.385e1

DP
type: SiteQuality
SIO_000300: 1.76717e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 560
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 2553
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32832
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variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.667140825035562e-4
allele num: 11248
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.926578270334455e-4
allele num: 10106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.76011e6

QD
type: SiteQuality
SIO_000300: 7.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 4.902e0

MQRankSum
type: SiteQuality
SIO_000300: -3.796e0

VQSLOD
type: SiteQuality
SIO_000300: -6.462e0

MQ
type: SiteQuality
SIO_000300: 4.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
all individuals: 1931
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variant carriers: 0

GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 7804
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variant carriers: 0

GenotypeQuality
all individuals: 1231
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GenotypeQuality
all individuals: 6776
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GenotypeQuality
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 2553
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563721657544957e-5
allele num: 63950
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 1.759143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQ
type: SiteQuality
SIO_000300: 4.448e1

QD
type: SiteQuality
SIO_000300: 1.449e1

GenotypeQuality
all individuals: 704
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32194
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.005607850991388e-4
allele num: 9986
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63660
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.892050506846879e-5
allele num: 11246
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.963e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.478e1

MQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

MQ
type: SiteQuality
SIO_000300: 4.605e1

DP
type: SiteQuality
SIO_000300: 1.748107e6

GenotypeQuality
all individuals: 635
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7608
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variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.388696014442438e-4
allele num: 14402
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.946e1

DP
type: SiteQuality
SIO_000300: 1.723638e6

VQSLOD
type: SiteQuality
SIO_000300: -3.436e0

MQ
type: SiteQuality
SIO_000300: 3.398e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
all individuals: 2616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6779
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1926
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.004763239002522e-5
allele num: 14276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.712e0

DP
type: SiteQuality
SIO_000300: 1.721252e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 6.38e0

FS
type: SiteQuality
SIO_000300: 1.2895e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

MQ
type: SiteQuality
SIO_000300: 4.284e1

VQSLOD
type: SiteQuality
SIO_000300: -3.703e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.311e0

GenotypeQuality
all individuals: 739
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variant carriers: 0

GenotypeQuality
all individuals: 1211
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GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
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GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 118
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GenotypeQuality
all individuals: 6781
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1924
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variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590179054161498e-5
allele num: 62886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13932
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.714398e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

FS
type: SiteQuality
SIO_000300: 2.723e0

VQSLOD
type: SiteQuality
SIO_000300: -1.375e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.443e0

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeQuality
all individuals: 2945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
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variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6777
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variant carriers: 1

GenotypeQuality
all individuals: 1231
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.673e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.919e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.397e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.705e0

VQSLOD
type: SiteQuality
SIO_000300: -1.864e0

DP
type: SiteQuality
SIO_000300: 1.692715e6

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28322
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variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 550
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.942944017170452e-5
allele num: 11182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 4.766e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

QD
type: SiteQuality
SIO_000300: 1.364e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.685265e6

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

GenotypeQuality
all individuals: 782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6779
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 1230
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1915
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12686
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.745e0

MQ
type: SiteQuality
SIO_000300: 4.503e1

DP
type: SiteQuality
SIO_000300: 1.67384e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e0

QD
type: SiteQuality
SIO_000300: 2.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.325e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.209551625637899e-5
allele num: 62314
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12646
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.449e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.762e0

FS
type: SiteQuality
SIO_000300: 4.751e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.066e1

DP
type: SiteQuality
SIO_000300: 1.672279e6

MQ
type: SiteQuality
SIO_000300: 4.823e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607045286536175e-5
allele num: 62226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.991e1

VQSLOD
type: SiteQuality
SIO_000300: -1.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.669054e6

QD
type: SiteQuality
SIO_000300: 1.419e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.485e0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 4034
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 1444
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61978
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

DP
type: SiteQuality
SIO_000300: 1.664394e6

FS
type: SiteQuality
SIO_000300: 1.806e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.615247940558876e-4
allele num: 12382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61978
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8492
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VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

FS
type: SiteQuality
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DP
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SIO_000300: 1.664394e6

BaseQRankSum
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SIO_000300: 3.67e0

InbreedingCoeff
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SIO_000300: 4.2e-3

MQ
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SIO_000300: 4.976e1

ClippingRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61858
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
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SIO_000300: -1.178e0

ReadPosRankSum
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SIO_000300: 1.28e0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.084e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.294e1

QD
type: SiteQuality
SIO_000300: 1.412e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.219e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
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SIO_000300: -2.189e0

DP
type: SiteQuality
SIO_000300: 1.656345e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.434e0

QD
type: SiteQuality
SIO_000300: 1.494e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 2.48403122782115e-3
allele num: 8454
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.559e1

MQ
type: SiteQuality
SIO_000300: 5.111e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.694e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.539e0

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.656977e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 337
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.371354043158644e-4
allele num: 8434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.701606316362646e-5
allele num: 58768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.643529e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

MQ
type: SiteQuality
SIO_000300: 5.203e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.522242964319679e-5
allele num: 56782
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.992e1

MQ
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SIO_000300: 4.952e1

DP
type: SiteQuality
SIO_000300: 2.767744e6

VQSLOD
type: SiteQuality
SIO_000300: -3.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001001001001001e-4
allele num: 9990
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.477468603792169e-3
allele num: 8122
num of homozygotes: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 3.527212444005503e-4
allele num: 56702
num of homozygotes: 6

QD
type: SiteQuality
SIO_000300: 1.039e1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.997e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.782e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 2.771046e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 1.51913e2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56958
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.62844702467344e-4
allele num: 8268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.449e0

ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.102e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 980
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.755679623582289e-5
allele num: 56958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

FS
type: SiteQuality
SIO_000300: 4.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.777e0

QD
type: SiteQuality
SIO_000300: 8.24e0

MQ
type: SiteQuality
SIO_000300: 4.102e1

DP
type: SiteQuality
SIO_000300: 2.779677e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 55

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1949
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.351351351351351e-3
allele num: 740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 72
allele frequency: 1.263512564930507e-3
allele num: 56984
num of homozygotes: 14

Latino
type: Population
allele count: 3
allele frequency: 2.816372512204281e-4
allele num: 10652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.471576866040534e-4
allele num: 8092
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 2.782807e6

MQ
type: SiteQuality
SIO_000300: 3.759e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.67e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.357e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.755494698406011e-5
allele num: 56964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

QD
type: SiteQuality
SIO_000300: 1.856e1

FS
type: SiteQuality
SIO_000300: 1.516e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 4.313e1

DP
type: SiteQuality
SIO_000300: 2.78576e6

GenotypeQuality
all individuals: 2760
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9389
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.87336080929187e-4
allele num: 10676
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.207729468599034e-4
allele num: 8280
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.78576e6

MQ
type: SiteQuality
SIO_000300: 4.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.913e0

FS
type: SiteQuality
SIO_000300: 1.516e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.856e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 28684
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variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.237317495669389e-4
allele num: 8082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10754
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.122e1

DP
type: SiteQuality
SIO_000300: 2.786284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQ
type: SiteQuality
SIO_000300: 4.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -2.267e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.981046458864183e-5
allele num: 57298
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.617801047120419e-3
allele num: 764
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11678
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.798456e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.676e0

QD
type: SiteQuality
SIO_000300: 1.529e1

FS
type: SiteQuality
SIO_000300: 9.446999999999999e0

MQ
type: SiteQuality
SIO_000300: 3.538e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.149e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

DP
type: SiteQuality
SIO_000300: 2.79884e6

VQSLOD
type: SiteQuality
SIO_000300: -2.885e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.121e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11770
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

African
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allele count: 5
allele frequency: 6.133464180569186e-4
allele num: 8152
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.743679163034002e-5
allele num: 57350
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 764
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.799335e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.426e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.105e1

MQ
type: SiteQuality
SIO_000300: 4.369e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.742889012827663e-5
allele num: 57376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10676
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.818e0

DP
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

Other
type: Population
allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.874414245548266e-4
allele num: 10670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e0

MQ
type: SiteQuality
SIO_000300: 4.442e1

FS
type: SiteQuality
SIO_000300: 3.446e0

QD
type: SiteQuality
SIO_000300: 2.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 2.799349e6

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.642036124794746e-4
allele num: 6090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.962333774281139e-5
allele num: 57452
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 2.799349e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.7e-1

FS
type: SiteQuality
SIO_000300: 3.446e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 4.442e1

QD
type: SiteQuality
SIO_000300: 2.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.372071227741331e-5
allele num: 10670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.797876e6

VQSLOD
type: SiteQuality
SIO_000300: -5.719e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQ
type: SiteQuality
SIO_000300: 3.889e1

FS
type: SiteQuality
SIO_000300: 5.856e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.622e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.381e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e0

QD
type: SiteQuality
SIO_000300: 1.724e1

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.736352271148771e-5
allele num: 57592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQ
type: SiteQuality
SIO_000300: 3.461e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -3.338e0

QD
type: SiteQuality
SIO_000300: 1.424e1

DP
type: SiteQuality
SIO_000300: 2.795553e6

GenotypeQuality
all individuals: 354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.736352271148771e-5
allele num: 57592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 3.461e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -3.338e0

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.247e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

QD
type: SiteQuality
SIO_000300: 1.424e1

DP
type: SiteQuality
SIO_000300: 2.795553e6

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 433

GenotypeQuality
all individuals: 8369
bin: 6.25e1
variant carriers: 614

GenotypeQuality
all individuals: 386
bin: 1.25e1
variant carriers: 345

GenotypeQuality
all individuals: 547
bin: 3.25e1
variant carriers: 483

GenotypeQuality
all individuals: 457
bin: 1.75e1
variant carriers: 417

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 347

GenotypeQuality
all individuals: 978
bin: 2.25e1
variant carriers: 397

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 447

GenotypeQuality
all individuals: 1004
bin: 8.75e1
variant carriers: 324

GenotypeQuality
all individuals: 1681
bin: 8.25e1
variant carriers: 582

GenotypeQuality
all individuals: 1775
bin: 7.75e1
variant carriers: 557

GenotypeQuality
all individuals: 2622
bin: 6.75e1
variant carriers: 613

East Asian
type: Population
allele count: 859
allele frequency: 1.036188178528347e-1
allele num: 8290
num of homozygotes: 84

African
type: Population
allele count: 1434
allele frequency: 1.707142857142857e-1
allele num: 8400
num of homozygotes: 378

Other
type: Population
allele count: 274
allele frequency: 3.50383631713555e-1
allele num: 782
num of homozygotes: 85

European (Finnish)
type: Population
allele count: 2753
allele frequency: 4.633120161561764e-1
allele num: 5942
num of homozygotes: 905

European (Non-Finnish)
type: Population
allele count: 23017
allele frequency: 4.045024779445362e-1
allele num: 56902
num of homozygotes: 7535

South Asian
type: Population
allele count: 2943
allele frequency: 2.245879120879121e-1
allele num: 13104
num of homozygotes: 973

Latino
type: Population
allele count: 1425
allele frequency: 1.351223212592452e-1
allele num: 10546
num of homozygotes: 314

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.068e0

QD
type: SiteQuality
SIO_000300: 1.039e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.676e-1

FS
type: SiteQuality
SIO_000300: 4.931e0

MQ
type: SiteQuality
SIO_000300: 3.149e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 3.273166e6