16-88781374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781374
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781374
    reference: chr 16
allele count: 31
allele frequency: 2.936551541215922e-4
allele num: 105566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+40C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12938
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-88781374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781374
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781374
    reference: chr 16
allele count: 3
allele frequency: 2.84182407214444e-5
allele num: 105566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+40C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+40C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12938
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-88781375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781375
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781375
    reference: chr 16
allele count: 3
allele frequency: 2.892904669148136e-5
allele num: 103702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+41G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+41G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

16-88781376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781376
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781376
    reference: chr 16
allele count: 93
allele frequency: 9.228204568457401e-4
allele num: 100778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+42C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13373
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

16-88781377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781377
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781377
    reference: chr 16
allele count: 1
allele frequency: 1.025619987282312e-5
allele num: 97502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+43G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

16-88781377-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781377
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781377
    reference: chr 16
allele count: 1
allele frequency: 1.025619987282312e-5
allele num: 97502
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+43G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+43G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-88781383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781383
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781383
    reference: chr 16
allele count: 10
allele frequency: 1.077470100204719e-4
allele num: 92810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+49G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+49G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13319
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13703
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-88781384-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781384
    reference: chr 16
allele count: 1
allele frequency: 8.92936869363336e-6
allele num: 111990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+50C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+50C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

16-88781384-C-CCGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781387
    reference: chr 16
allele count: 1783
allele frequency: 1.592106438074828e-2
allele num: 111990
alternate allele: CCGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+52_1158+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+52_123+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+52_1355+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+52_1419+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+52_*1130+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+52_713+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+52_1632+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+52_1419+54dupGTC
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 1.25e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 2.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 1.75e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.25e1
  variant carriers: 360
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 3.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 5.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 4.25e1
  variant carriers: 12
num of homozygotes: 135
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-88781384-C-CTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781387
    reference: chr 16
allele count: 33516
allele frequency: 2.992767211358157e-1
allele num: 111990
alternate allele: CTGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+50_123+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+50_*1130+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+50_1158+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+50_1419+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+50_1355+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+50_1632+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+50_1419+51insTGT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+50_713+51insTGT
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 1124
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 1.25e1
  variant carriers: 4245
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 3.25e1
  variant carriers: 2344
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 1.75e1
  variant carriers: 7403
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.25e1
  variant carriers: 7035
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 2.75e1
  variant carriers: 4352
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 977
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.5e0
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.25e1
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 221
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 4.75e1
  variant carriers: 598
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.25e1
  variant carriers: 159
num of homozygotes: 5723
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-88781384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781384
    reference: chr 16
allele count: 7
allele frequency: 6.250558085543352e-5
allele num: 111990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+50C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24940
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-88781385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781385
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781385
    reference: chr 16
allele count: 9
allele frequency: 1.654776788997573e-4
allele num: 54388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+51C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+51C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17483
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

16-88781386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781386
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781386
    reference: chr 16
allele count: 6
allele frequency: 5.330300984328915e-5
allele num: 112564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1419+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1632+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1158+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1355+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.123+52G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1130+52G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14635
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

16-88781406-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781406
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781407
    reference: chr 16
allele count: 1
allele frequency: 9.862711062016726e-6
allele num: 101392
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+77dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-45dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-45dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-45dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-45dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.19dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-45dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+77dupG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-45dupG
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9038
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-88781410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781410
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781410
    reference: chr 16
allele count: 16
allele frequency: 1.643486656942704e-4
allele num: 97354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-46G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.18G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-46G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-46G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+76G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-46G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-46G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+76G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-46G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18438
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

16-88781411-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781411
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781411
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 97632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+77G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-45G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-45G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.19G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+77G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-45G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-45G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-45G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-45G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11257
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

16-88781413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781413
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781413
    reference: chr 16
allele count: 1
allele frequency: 1.02475815707493e-5
allele num: 97584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.21G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+79G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-43G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+79G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-43G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-88781418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781418
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781418
    reference: chr 16
allele count: 8
allele frequency: 8.350207711416822e-5
allele num: 95806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+84C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.26C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+84C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15574
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18543
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

16-88781419-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781419
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781419
    reference: chr 16
allele count: 88606
allele frequency: 8.956433842110583e-1
allele num: 98930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-37A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-37A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-37A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-37A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+85A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.27A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-37A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+85A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-37A>G
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16051
  bin: 1.75e1
  variant carriers: 15880
genotype depth: GenotypeDepth
  all individuals: 17733
  bin: 1.25e1
  variant carriers: 17305
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.5e0
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.25e1
  variant carriers: 8611
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 2.75e1
  variant carriers: 3337
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 7.5e0
  variant carriers: 7999
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 1299
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 687
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 5.25e1
  variant carriers: 4924
genotype quality: GenotypeQuality
  all individuals: 5788
  bin: 4.75e1
  variant carriers: 5766
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.5e0
  variant carriers: 474
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 3155
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 7.75e1
  variant carriers: 1506
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.5e0
  variant carriers: 181
num of homozygotes: 39665
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ

16-88781420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781420
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781420
    reference: chr 16
allele count: 1
allele frequency: 1.12711616059151e-5
allele num: 88722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+86G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-36G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-36G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.28G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-36G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-36G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+86G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-36G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-36G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21901
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

16-88781422-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781422
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781422
    reference: chr 16
allele count: 16
allele frequency: 1.909353445189623e-4
allele num: 83798
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-34T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+88T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-34T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-34T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.30T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+88T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-34T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-34T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-34T>G
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21843
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11675
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 6177
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-88781423-TTCTTGGCCCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781423
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781413
    reference: chr 16
allele count: 1
allele frequency: 1.143981513258746e-5
allele num: 87414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.34_43delTTGGCCCCTC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: TTCTTGGCCCC
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/16-88781425-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781425
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781425
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 85034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-31C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-31C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.33C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-31C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-31C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+91C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-31C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-31C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+91C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-88781430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781430
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781430
    reference: chr 16
allele count: 1
allele frequency: 1.201576468326444e-5
allele num: 83224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-26C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-26C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+96C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-26C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-26C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-26C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+96C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.38C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-26C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20968
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-88781431-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781431
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781431
    reference: chr 16
allele count: 1
allele frequency: 1.191469081377338e-5
allele num: 83930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-25C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+97C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+97C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-25C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.39C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-25C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-25C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-25C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-25C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11503
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

16-88781431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781431
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781431
    reference: chr 16
allele count: 6
allele frequency: 7.14881448826403e-5
allele num: 83930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-25C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-25C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.39C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-25C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+97C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-25C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-25C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+97C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-25C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20949
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11503
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6453
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

16-88781432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781432
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781432
    reference: chr 16
allele count: 1
allele frequency: 1.187535626068782e-5
allele num: 84208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-24C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+98C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-24C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-24C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+98C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-24C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-24C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-24C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20931
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18007
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

16-88781433-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781433
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781433
    reference: chr 16
allele count: 50
allele frequency: 5.969721572185873e-4
allele num: 83756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.41C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+99C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-23C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-23C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-23C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-23C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+99C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-23C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-23C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20789
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14163
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3444
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17938
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

16-88781435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781435
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781435
    reference: chr 16
allele count: 198
allele frequency: 2.393674895427839e-3
allele num: 82718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-21C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+101C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-21C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-21C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+101C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.43C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-21C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-21C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-21C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20548
  bin: 1.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7888
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

16-88781436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781436
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781436
    reference: chr 16
allele count: 2
allele frequency: 2.398426632129323e-5
allele num: 83388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+102G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-20G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-20G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+102G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-20G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.44G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-20G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-20G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-20G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10549
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20446
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

16-88781441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781441
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781441
    reference: chr 16
allele count: 25
allele frequency: 2.990502165123567e-4
allele num: 83598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+107C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-15C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-15C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-15C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.49C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-15C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+107C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-15C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-15C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19952
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7714
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

16-88781442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781442
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781442
    reference: chr 16
allele count: 1
allele frequency: 1.192890373374687e-5
allele num: 83830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-14G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+108G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-14G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-14G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.50G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+108G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-14G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-14G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-14G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19689
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum

16-88781447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781447
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781447
    reference: chr 16
allele count: 1
allele frequency: 1.181139563450817e-5
allele num: 84664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.55C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-9C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-9C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+113C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-9C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-9C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-9C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+113C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-9C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18597
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-88781453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781453
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781453
    reference: chr 16
allele count: 1
allele frequency: 1.175668367466905e-5
allele num: 85058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+119C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+119C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.61C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13141
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1420-3C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

16-88781455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781455
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781455
    reference: chr 16
allele count: 3
allele frequency: 3.510332077414523e-5
allele num: 85462
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420-1G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131-1G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+121G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633-1G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159-1G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356-1G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+121G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124-1G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.63G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5990
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1420-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/16-88781456-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781456
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781456
    reference: chr 16
allele count: 2
allele frequency: 2.334212553395112e-5
allele num: 85682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1420C>A
  hgvsp: ENSP00000388320.2:p.Pro474Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.64C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1159C>A
  hgvsp: ENSP00000367635.3:p.Pro387Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1633C>A
  hgvsp: ENSP00000456908.1:p.Pro545Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+122C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1131C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.124C>A
  hgvsp: ENSP00000455305.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+122C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1356C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro474Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

16-88781461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781461
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781461
    reference: chr 16
allele count: 237
allele frequency: 2.718825283927957e-3
allele num: 87170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1638A>G
  hgvsp: ENST00000567949.1:c.1638A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.129A>G
  hgvsp: ENST00000567316.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1361A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1419+127A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.713+127A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1164A>G
  hgvsp: ENST00000378384.3:c.1164A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1425A>G
  hgvsp: ENST00000453996.2:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1136A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.69A>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16750
  bin: 2.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4548
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser475Ser
num of homozygotes: 1
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-88781465-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781465
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781465
    reference: chr 16
allele count: 2
allele frequency: 2.259631680036154e-5
allele num: 88510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1140G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1429G>C
  hgvsp: ENSP00000388320.2:p.Asp477His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1642G>C
  hgvsp: ENSP00000456908.1:p.Asp548His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1168G>C
  hgvsp: ENSP00000367635.3:p.Asp390His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1365G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-125G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.133G>C
  hgvsp: ENSP00000455305.1:p.Asp45His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-125G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.73G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp477His
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/16-88781470-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781470
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781470
    reference: chr 16
allele count: 1
allele frequency: 1.107346134254645e-5
allele num: 90306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1647C>A
  hgvsp: ENST00000567949.1:c.1647C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1173C>A
  hgvsp: ENST00000378384.3:c.1173C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-120C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.78C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1434C>A
  hgvsp: ENST00000453996.2:c.1434C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.138C>A
  hgvsp: ENST00000567316.1:c.138C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1145C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-120C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1370C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20672
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro478Pro
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

16-88781475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781475
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781475
    reference: chr 16
allele count: 16
allele frequency: 1.727414061150458e-4
allele num: 92624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-115C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1178C>T
  hgvsp: ENSP00000367635.3:p.Pro393Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1150C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.143C>T
  hgvsp: ENSP00000455305.1:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1439C>T
  hgvsp: ENSP00000388320.2:p.Pro480Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1652C>T
  hgvsp: ENSP00000456908.1:p.Pro551Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1375C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.83C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-115C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11491
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23790
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13476
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro480Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-88781476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781476
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781476
    reference: chr 16
allele count: 2
allele frequency: 2.135885003951387e-5
allele num: 93638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1151G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1376G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1653G>A
  hgvsp: ENST00000567949.1:c.1653G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1440G>A
  hgvsp: ENST00000453996.2:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1179G>A
  hgvsp: ENST00000378384.3:c.1179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.144G>A
  hgvsp: ENST00000567316.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-114G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-114G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.84G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12880
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Pro480Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

16-88781476-GCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781476
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781474
    reference: chr 16
allele count: 1
allele frequency: 1.067942501975694e-5
allele num: 93638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-113_1420-112delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-113_714-112delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.85_86delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1152_*1153delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1441_1442delCC
  hgvsp: ENSP00000388320.2:p.Pro481ValfsTer5
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1180_1181delCC
  hgvsp: ENSP00000367635.3:p.Pro394ValfsTer5
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1654_1655delCC
  hgvsp: ENSP00000456908.1:p.Pro552ValfsTer5
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1377_1378delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.145_146delCC
  hgvsp: ENSP00000455305.1:p.Pro49ValfsTer5
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro481ValfsTer5
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: GCC
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

16-88781478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781478
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781478
    reference: chr 16
allele count: 13
allele frequency: 1.362940596758298e-4
allele num: 95382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1181C>T
  hgvsp: ENSP00000367635.3:p.Pro394Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1655C>T
  hgvsp: ENSP00000456908.1:p.Pro552Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-112C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1378C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1442C>T
  hgvsp: ENSP00000388320.2:p.Pro481Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.86C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1153C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.146C>T
  hgvsp: ENSP00000455305.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-112C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27197
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11886
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro481Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS

16-88781479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781479
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781479
    reference: chr 16
allele count: 21
allele frequency: 2.187363289794388e-4
allele num: 96006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1443G>A
  hgvsp: ENST00000453996.2:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1154G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-111G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.87G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1656G>A
  hgvsp: ENST00000567949.1:c.1656G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-111G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.147G>A
  hgvsp: ENST00000567316.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1182G>A
  hgvsp: ENST00000378384.3:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1379G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27601
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11284
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro481Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-88781482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781482
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781482
    reference: chr 16
allele count: 1
allele frequency: 1.016528757598552e-5
allele num: 98374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.150C>T
  hgvsp: ENST00000567316.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1446C>T
  hgvsp: ENST00000453996.2:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1382C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1659C>T
  hgvsp: ENST00000567949.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1185C>T
  hgvsp: ENST00000378384.3:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.90C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-108C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-108C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1157C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr482Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

16-88781484-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781484
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781484
    reference: chr 16
allele count: 1
allele frequency: 1.007373977515413e-5
allele num: 99268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-106T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-106T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.152T>C
  hgvsp: ENSP00000455305.1:p.Ile51Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1159T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1384T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1448T>C
  hgvsp: ENSP00000388320.2:p.Ile483Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1661T>C
  hgvsp: ENSP00000456908.1:p.Ile554Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1187T>C
  hgvsp: ENSP00000367635.3:p.Ile396Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.92T>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30524
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile483Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-88781485-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781485
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781485
    reference: chr 16
allele count: 2
allele frequency: 2.008556450479041e-5
allele num: 99574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1188C>A
  hgvsp: ENST00000378384.3:c.1188C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1662C>A
  hgvsp: ENST00000567949.1:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1160C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-105C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.93C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1449C>A
  hgvsp: ENST00000453996.2:c.1449C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.153C>A
  hgvsp: ENST00000567316.1:c.153C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1385C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-105C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile483Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-88781486-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781486
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781486
    reference: chr 16
allele count: 1
allele frequency: 1.00080064051241e-5
allele num: 99920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1386C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.154C>G
  hgvsp: ENSP00000455305.1:p.Leu52Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1161C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1189C>G
  hgvsp: ENSP00000367635.3:p.Leu397Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1663C>G
  hgvsp: ENSP00000456908.1:p.Leu555Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-104C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1450C>G
  hgvsp: ENSP00000388320.2:p.Leu484Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.94C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-104C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu484Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

16-88781495-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781495
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781495
    reference: chr 16
allele count: 1
allele frequency: 9.695747445170549e-6
allele num: 103138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-95G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1672G>A
  hgvsp: ENSP00000456908.1:p.Ala558Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-95G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1198G>A
  hgvsp: ENSP00000367635.3:p.Ala400Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1170G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1459G>A
  hgvsp: ENSP00000388320.2:p.Ala487Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.163G>A
  hgvsp: ENSP00000455305.1:p.Ala55Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.103G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1395G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala487Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/16-88781503-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781503
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781503
    reference: chr 16
allele count: 3
allele frequency: 2.836718484057642e-5
allele num: 105756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1206C>A
  hgvsp: ENST00000378384.3:c.1206C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1178C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.171C>A
  hgvsp: ENST00000567316.1:c.171C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1680C>A
  hgvsp: ENST00000567949.1:c.1680C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-87C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1403C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-87C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1467C>A
  hgvsp: ENST00000453996.2:c.1467C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.111C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu489Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

16-88781504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781504
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781504
    reference: chr 16
allele count: 19
allele frequency: 1.792249933969739e-4
allele num: 106012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-86C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-86C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1468C>T
  hgvsp: ENSP00000388320.2:p.Arg490Cys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1681C>T
  hgvsp: ENSP00000456908.1:p.Arg561Cys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1179C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1404C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.112C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1207C>T
  hgvsp: ENSP00000367635.3:p.Arg403Cys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.172C>T
  hgvsp: ENSP00000455305.1:p.Arg58Cys
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33014
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg490Cys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

16-88781504-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781504
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781504
    reference: chr 16
allele count: 1
allele frequency: 9.432894389314418e-6
allele num: 106012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1404C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1468C>G
  hgvsp: ENSP00000388320.2:p.Arg490Gly
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1207C>G
  hgvsp: ENSP00000367635.3:p.Arg403Gly
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.172C>G
  hgvsp: ENSP00000455305.1:p.Arg58Gly
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1179C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1681C>G
  hgvsp: ENSP00000456908.1:p.Arg561Gly
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.112C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-86C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-86C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg490Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

16-88781505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781505
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781505
    reference: chr 16
allele count: 1
allele frequency: 9.399026260879374e-6
allele num: 106394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1469G>A
  hgvsp: ENSP00000388320.2:p.Arg490His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-85G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1180G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.173G>A
  hgvsp: ENSP00000455305.1:p.Arg58His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1682G>A
  hgvsp: ENSP00000456908.1:p.Arg561His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.113G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1208G>A
  hgvsp: ENSP00000367635.3:p.Arg403His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-85G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1405G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg490His
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-88781510-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781510
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781508
    reference: chr 16
allele count: 15
allele frequency: 1.389841187480311e-4
allele num: 107926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1216_1217delAG
  hgvsp: ENSP00000367635.3:p.Arg406GlyfsTer13
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-77_714-76delAG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1413_1414delAG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1690_1691delAG
  hgvsp: ENSP00000456908.1:p.Arg564GlyfsTer13
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1188_*1189delAG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.181_182delAG
  hgvsp: ENSP00000455305.1:p.Arg61ValfsTer25
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-77_1420-76delAG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.121_122delAG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1477_1478delAG
  hgvsp: ENSP00000388320.2:p.Arg493GlyfsTer13
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33610
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5477
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg493GlyfsTer13
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: CAG
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

16-88781514-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781514
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781514
    reference: chr 16
allele count: 2
allele frequency: 1.837965005146302e-5
allele num: 108816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-76G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691G>C
  hgvsp: ENSP00000456908.1:p.Arg564Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217G>C
  hgvsp: ENSP00000367635.3:p.Arg406Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478G>C
  hgvsp: ENSP00000388320.2:p.Arg493Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.182G>C
  hgvsp: ENSP00000455305.1:p.Arg61Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-76G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg493Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

16-88781519-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781519
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781521
    reference: chr 16
allele count: 1
allele frequency: 9.113444152814232e-6
allele num: 109728
alternate allele: TGG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+8_1691+9dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+8_1478+9dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.190_191dupGG
  hgvsp: ENSP00000455305.1:p.Pro65AlafsTer9
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-68_1420-67dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-68_714-67dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+8_*1189+9dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+8_1217+9dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+8_1414+9dupGG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+8_122+9dupGG
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34013
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro65AlafsTer9
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

16-88781520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781520
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781520
    reference: chr 16
allele count: 1
allele frequency: 9.102494083378845e-6
allele num: 109860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+6G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+6G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+6G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+6G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.188G>A
  hgvsp: ENSP00000455305.1:p.Trp63Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-70G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+6G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-70G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+6G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp63Ter
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

16-88781521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781521
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781521
    reference: chr 16
allele count: 91
allele frequency: 8.27107305811565e-4
allele num: 110022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-69G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-69G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.189G>A
  hgvsp: ENSP00000455305.1:p.Trp63Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+7G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34036
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp63Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/16-88781525-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781525
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781525
    reference: chr 16
allele count: 1
allele frequency: 9.047481181239142e-6
allele num: 110528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-65C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+11C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+11C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+11C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.193C>A
  hgvsp: ENSP00000455305.1:p.Pro65Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+11C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+11C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+11C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-65C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro65Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-88781525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781525
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781525
    reference: chr 16
allele count: 3
allele frequency: 2.714244354371743e-5
allele num: 110528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+11C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+11C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+11C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+11C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.193C>T
  hgvsp: ENSP00000455305.1:p.Pro65Ser
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+11C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+11C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-65C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-65C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro65Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

16-88781526-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781526
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781526
    reference: chr 16
allele count: 1
allele frequency: 9.026900162484202e-6
allele num: 110780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.194C>G
  hgvsp: ENSP00000455305.1:p.Pro65Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-64C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+12C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+12C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+12C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+12C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+12C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-64C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+12C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5664
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro65Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-88781526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781526
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781526
    reference: chr 16
allele count: 1
allele frequency: 9.026900162484202e-6
allele num: 110780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+12C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+12C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.194C>T
  hgvsp: ENSP00000455305.1:p.Pro65Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+12C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-64C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-64C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+12C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+12C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+12C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro65Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-88781527-A-ACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781527
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781529
    reference: chr 16
allele count: 3
allele frequency: 2.703482084925384e-5
allele num: 110968
alternate allele: ACC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+14_*1189+15insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+14_1691+15insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-62_1420-61insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+14_122+15insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.196_197insCC
  hgvsp: ENSP00000455305.1:p.His66ProfsTer8
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-62_714-61insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+14_1414+15insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+14_1478+15insCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+14_1217+15insCC
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11750
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34162
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His66ProfsTer8
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-88781527-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781527
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781527
    reference: chr 16
allele count: 2
allele frequency: 1.802321389950256e-5
allele num: 110968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+13A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-63A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+13A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-63A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+13A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.195A>C
  hgvsp: ENST00000567316.1:c.195A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+13A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+13A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+13A>C
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37586
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro65Pro
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

16-88781529-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781529
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781529
    reference: chr 16
allele count: 3
allele frequency: 2.694062286720069e-5
allele num: 111356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+15A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.197A>G
  hgvsp: ENSP00000455305.1:p.His66Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+15A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-61A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-61A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+15A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+15A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+15A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+15A>G
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37717
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His66Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

16-88781532-GCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781532
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781530
    reference: chr 16
allele count: 3
allele frequency: 2.685813532919121e-5
allele num: 111698
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+19_1478+20delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-57_1420-56delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+19_*1189+20delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+19_1414+20delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+19_1217+20delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+19_122+20delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+19_1691+20delCC
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.201_202delCC
  hgvsp: ENSP00000455305.1:p.Cys67TrpfsTer19
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-57_714-56delCC
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34415
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys67TrpfsTer19
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: GCC
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

16-88781534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781534
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781534
    reference: chr 16
allele count: 9007
allele frequency: 8.003803295004176e-2
allele num: 112534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-56C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+20C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+20C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.202C>T
  hgvsp: ENSP00000455305.1:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+20C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+20C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-56C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+20C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+20C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 29559
  bin: 2.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 6.25e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 3.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.75e1
  variant carriers: 799
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 2.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 549
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 7.5e0
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.25e1
  variant carriers: 772
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 630
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 762
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 460
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.5e0
  variant carriers: 5
hgvs: p.Arg68Cys
num of homozygotes: 439
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-88781535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781535
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781535
    reference: chr 16
allele count: 4
allele frequency: 3.543209439109946e-5
allele num: 112892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+21G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-55G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+21G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+21G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.203G>A
  hgvsp: ENSP00000455305.1:p.Arg68His
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+21G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+21G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-55G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+21G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg68His
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

16-88781535-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781535
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781534
    reference: chr 16
allele count: 3
allele frequency: 2.657407079332459e-5
allele num: 112892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+22delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.204delT
  hgvsp: ENSP00000455305.1:p.Gly69AlafsTer4
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+22delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+22delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-54delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+22delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-54delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+22delT
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+22delT
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly69AlafsTer4
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: GT
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

16-88781538-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88781538
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88781538
    reference: chr 16
allele count: 1
allele frequency: 8.830801836806782e-6
allele num: 113240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.1691+24G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455305
  ensembl transcript: ENST00000567316
  gene symbol: CTU2
  hgvsc: ENST00000567316.1:c.206G>T
  hgvsp: ENSP00000455305.1:p.Gly69Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.1420-52G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.1217+24G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*1189+24G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000564584
  gene symbol: CTU2
  hgvsc: ENST00000564584.1:n.714-52G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000562011
  gene symbol: CTU2
  hgvsc: ENST00000562011.1:n.122+24G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.1414+24G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.1478+24G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly69Val
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 879
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.080613788631943e-4
allele num: 9254
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.282051282051282e-3
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.402903811252268e-4
allele num: 8816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.792856157771342e-3
allele num: 14502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.4074e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

FS
type: SiteQuality
SIO_000300: 1.568e0

MQ
type: SiteQuality
SIO_000300: 5.425e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: -7.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
all individuals: 5996
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4229
bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11168
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variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.95458298926507e-5
allele num: 60550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

MQ
type: SiteQuality
SIO_000300: 5.425e1

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

FS
type: SiteQuality
SIO_000300: 1.568e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: -7.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 1.4074e6

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.660798511924533e-5
allele num: 60212
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.106310403638431e-5
allele num: 14072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.227e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 5.639e0

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.402424e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.266e0

VQSLOD
type: SiteQuality
SIO_000300: -5.327e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

GenotypeQuality
all individuals: 1024
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 2.5e0
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GenotypeQuality
all individuals: 2098
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1070
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GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 9.75e1
variant carriers: 90

GenotypeQuality
all individuals: 4399
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variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9401
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.179598953792502e-4
allele num: 13764
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.20627261761158e-4
allele num: 8290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.292900799247767e-3
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.326981966655325e-3
allele num: 58780
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

DP
type: SiteQuality
SIO_000300: 1.394887e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
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variant carriers: 0

GenotypeQuality
all individuals: 9543
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4244
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GenotypeQuality
all individuals: 2792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5472
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.548309178743961e-5
allele num: 13248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQ
type: SiteQuality
SIO_000300: 5.598e1

FS
type: SiteQuality
SIO_000300: 4.534e0

QD
type: SiteQuality
SIO_000300: 7.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.189e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

DP
type: SiteQuality
SIO_000300: 1.393171e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
all individuals: 960
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5472
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10979
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variant carriers: 0

GenotypeQuality
all individuals: 333
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variant carriers: 0

GenotypeQuality
all individuals: 405
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variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9543
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13248
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.189e0

FS
type: SiteQuality
SIO_000300: 4.534e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQ
type: SiteQuality
SIO_000300: 5.598e1

DP
type: SiteQuality
SIO_000300: 1.393171e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 7.37e0

GenotypeQuality
all individuals: 2493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 4.25e1
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GenotypeQuality
all individuals: 3801
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variant carriers: 0

GenotypeQuality
all individuals: 2090
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GenotypeQuality
all individuals: 1028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
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variant carriers: 0

GenotypeQuality
all individuals: 6336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.419647927314026e-4
allele num: 7044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 7.210382951450088e-4
allele num: 12482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

FS
type: SiteQuality
SIO_000300: 1.2471e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 1.375778e6

QD
type: SiteQuality
SIO_000300: 1.313e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeQuality
all individuals: 1876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2658
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 3.25e1
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GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
all individuals: 990
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variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.625487646293888e-5
allele num: 61520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

DP
type: SiteQuality
SIO_000300: 1.372531e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

MQ
type: SiteQuality
SIO_000300: 5.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.178e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 2.313e1

MQRankSum
type: SiteQuality
SIO_000300: -1.302e0

GenotypeQuality
all individuals: 561
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 687
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2658
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2714
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 505
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variant carriers: 9

GenotypeQuality
all individuals: 3449
bin: 3.75e1
variant carriers: 21

GenotypeQuality
all individuals: 3398
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 22

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 24940
bin: 9.75e1
variant carriers: 1553

GenotypeQuality
all individuals: 1325
bin: 7.75e1
variant carriers: 11

Latino
type: Population
allele count: 84
allele frequency: 8.036739380022962e-3
allele num: 10452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.316321374431532e-5
allele num: 15832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 98
allele frequency: 1.59297789336801e-3
allele num: 61520
num of homozygotes: 0

African
type: Population
allele count: 1596
allele frequency: 1.678586453512831e-1
allele num: 9508
num of homozygotes: 135

Other
type: Population
allele count: 4
allele frequency: 4.819277108433735e-3
allele num: 830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: -1.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.178e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.424e1

DP
type: SiteQuality
SIO_000300: 1.372531e6

QD
type: SiteQuality
SIO_000300: 2.313e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
all individuals: 982
bin: 2.5e0
variant carriers: 126

GenotypeQuality
all individuals: 2658
bin: 5.25e1
variant carriers: 615

GenotypeQuality
all individuals: 687
bin: 1.75e1
variant carriers: 186

GenotypeQuality
all individuals: 3061
bin: 3.25e1
variant carriers: 368

GenotypeQuality
all individuals: 3449
bin: 3.75e1
variant carriers: 437

GenotypeQuality
all individuals: 2126
bin: 4.25e1
variant carriers: 504

GenotypeQuality
all individuals: 5201
bin: 6.25e1
variant carriers: 516

GenotypeQuality
all individuals: 24940
bin: 9.75e1
variant carriers: 22800

GenotypeQuality
all individuals: 505
bin: 8.75e1
variant carriers: 208

GenotypeQuality
all individuals: 1034
bin: 5.75e1
variant carriers: 548

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 219

GenotypeQuality
all individuals: 1325
bin: 7.75e1
variant carriers: 311

European (Non-Finnish)
type: Population
allele count: 13082
allele frequency: 2.126462938881664e-1
allele num: 61520
num of homozygotes: 1306

European (Finnish)
type: Population
allele count: 1565
allele frequency: 2.641796083727211e-1
allele num: 5924
num of homozygotes: 162

Other
type: Population
allele count: 249
allele frequency: 3.0e-1
allele num: 830
num of homozygotes: 34

African
type: Population
allele count: 2550
allele frequency: 2.681952040387042e-1
allele num: 9508
num of homozygotes: 324

Latino
type: Population
allele count: 4872
allele frequency: 4.661308840413318e-1
allele num: 10452
num of homozygotes: 1066

South Asian
type: Population
allele count: 6024
allele frequency: 3.804951995957555e-1
allele num: 15832
num of homozygotes: 1181

East Asian
type: Population
allele count: 5174
allele frequency: 6.529530540131246e-1
allele num: 7924
num of homozygotes: 1650

MQRankSum
type: SiteQuality
SIO_000300: -1.302e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 1.372531e6

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 5.424e1

QD
type: SiteQuality
SIO_000300: 2.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.178e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
all individuals: 2658
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.103491796381994e-4
allele num: 9508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.309944472488642e-4
allele num: 7924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.302e0

QD
type: SiteQuality
SIO_000300: 2.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.178e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 1.372531e6

GenotypeQuality
all individuals: 3963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.622849724115547e-4
allele num: 6162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.34448160535117e-4
allele num: 2990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3138
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.530973451327434e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.26454330086865e-5
allele num: 37990
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.37513e6

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.676e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.49e-2

QD
type: SiteQuality
SIO_000300: 1.097e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 6894
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6714
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5618
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.079893991790828e-5
allele num: 61882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.367804381049414e-5
allele num: 15704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.167e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.637e0

DP
type: SiteQuality
SIO_000300: 1.359634e6

VQSLOD
type: SiteQuality
SIO_000300: 2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.31e-1

GenotypeQuality
all individuals: 2948
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.960879855213699e-5
allele num: 14366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 8.573e0

QD
type: SiteQuality
SIO_000300: 9.67e0

MQ
type: SiteQuality
SIO_000300: 5.874e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.067165e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 1714
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7726
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9199
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.071122536418166e-3
allele num: 14004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.428571428571429e-3
allele num: 700
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.042138e6

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.973e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.328e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 1.1049e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

GenotypeQuality
all individuals: 3192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.058e0

DP
type: SiteQuality
SIO_000300: 1.041415e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.912e1

QD
type: SiteQuality
SIO_000300: 3.109e1

GenotypeQuality
all individuals: 2887
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.24285359184688e-4
allele num: 8046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.521e1

QD
type: SiteQuality
SIO_000300: 3.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.041024e6

GenotypeQuality
all individuals: 3164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11070
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3393
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 5.055611729019212e-4
allele num: 7912
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.136105430583958e-4
allele num: 8802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.630630630630631e-5
allele num: 53280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.712e1

VQSLOD
type: SiteQuality
SIO_000300: -2.734e-1

FS
type: SiteQuality
SIO_000300: 4.556e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 1.04313e6

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

GenotypeQuality
all individuals: 2489
bin: 6.75e1
variant carriers: 2475

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 507

GenotypeQuality
all individuals: 11953
bin: 9.75e1
variant carriers: 11935

GenotypeQuality
all individuals: 1886
bin: 1.75e1
variant carriers: 1855

GenotypeQuality
all individuals: 689
bin: 1.25e1
variant carriers: 660

GenotypeQuality
all individuals: 2309
bin: 2.75e1
variant carriers: 2218

GenotypeQuality
all individuals: 1060
bin: 8.25e1
variant carriers: 1054

GenotypeQuality
all individuals: 5279
bin: 3.25e1
variant carriers: 5192

GenotypeQuality
all individuals: 2092
bin: 5.75e1
variant carriers: 2085

GenotypeQuality
all individuals: 3552
bin: 6.25e1
variant carriers: 3477

GenotypeQuality
all individuals: 3454
bin: 2.25e1
variant carriers: 3240

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 1027

GenotypeQuality
all individuals: 5943
bin: 3.75e1
variant carriers: 5899

GenotypeQuality
all individuals: 688
bin: 9.25e1
variant carriers: 688

European (Finnish)
type: Population
allele count: 4400
allele frequency: 8.740564163686929e-1
allele num: 5034
num of homozygotes: 1929

Latino
type: Population
allele count: 7820
allele frequency: 8.618029534934979e-1
allele num: 9074
num of homozygotes: 3357

African
type: Population
allele count: 6973
allele frequency: 8.541156295933366e-1
allele num: 8164
num of homozygotes: 2976

Other
type: Population
allele count: 627
allele frequency: 8.931623931623932e-1
allele num: 702
num of homozygotes: 285

East Asian
type: Population
allele count: 6256
allele frequency: 9.183793305930711e-1
allele num: 6812
num of homozygotes: 2866

European (Non-Finnish)
type: Population
allele count: 50337
allele frequency: 9.139220741493881e-1
allele num: 55078
num of homozygotes: 22972

South Asian
type: Population
allele count: 12193
allele frequency: 8.668420304279824e-1
allele num: 14066
num of homozygotes: 5280

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.31e-2

QD
type: SiteQuality
SIO_000300: 3.122e1

DP
type: SiteQuality
SIO_000300: 1.063238e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

GenotypeQuality
all individuals: 1410
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8357
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5539
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.987992525148105e-5
allele num: 50302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 9.1873e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.204e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

QD
type: SiteQuality
SIO_000300: 8.92e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

GenotypeQuality
all individuals: 2834
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1617
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7789
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 17066
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5305
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.477051460361613e-4
allele num: 5752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.901960784313725e-4
allele num: 4080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.886396981764829e-4
allele num: 47710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.285714285714285e-4
allele num: 7000
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: -1.723e2

FS
type: SiteQuality
SIO_000300: 1.93121e2

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.964e0

QD
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 9.02767e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 374
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5351
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3017
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.014342115864958e-5
allele num: 49644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.037e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.674e0

FS
type: SiteQuality
SIO_000300: 4.242e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 9.00497e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.106e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 3.87e0

GenotypeQuality
all individuals: 17225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8074
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6464
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

DP
type: SiteQuality
SIO_000300: 8.90571e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.519e1

QD
type: SiteQuality
SIO_000300: 3.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 6419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8016
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3311
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094065418603677e-5
allele num: 47754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.83699e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.047e1

VQSLOD
type: SiteQuality
SIO_000300: -6.868e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 7.384e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.641e1

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8058
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.70299727520436e-4
allele num: 5872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

DP
type: SiteQuality
SIO_000300: 8.83701e5

VQSLOD
type: SiteQuality
SIO_000300: -3.096e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8058
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.871990604815032e-4
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

DP
type: SiteQuality
SIO_000300: 8.83701e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: -3.096e-1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 457
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5468
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8031
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48284
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.456e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.84549e5

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7977
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 527
bin: 2.5e0
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GenotypeQuality
all individuals: 997
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 9.75e1
variant carriers: 50

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.137426149499101e-4
allele num: 7786
num of homozygotes: 0

African
type: Population
allele count: 46
allele frequency: 6.597819850831899e-3
allele num: 6972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.84401e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1854
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1868
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variant carriers: 189

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3503
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5343
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 979
bin: 5.25e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 148
allele frequency: 3.109766347285258e-3
allele num: 47592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.592016588906169e-4
allele num: 7716
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.709986320109439e-4
allele num: 5848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 43
allele frequency: 9.921550530687587e-3
allele num: 4334
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.067484662576687e-4
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.84727e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

FS
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.443001443001443e-4
allele num: 6930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083941149501938e-5
allele num: 47986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

FS
type: SiteQuality
SIO_000300: 9.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.109e0

DP
type: SiteQuality
SIO_000300: 8.89113e5

QD
type: SiteQuality
SIO_000300: 1.137e1

VQSLOD
type: SiteQuality
SIO_000300: -8.732e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.781e1

GenotypeQuality
all individuals: 19129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6141
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variant carriers: 0

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1176
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1709
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variant carriers: 24

GenotypeQuality
all individuals: 186
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variant carriers: 3

GenotypeQuality
all individuals: 1348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 8.964589870013447e-4
allele num: 4462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.657618830549915e-4
allele num: 48262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.363605785401951e-4
allele num: 5946
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.752085130859936e-4
allele num: 6954
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 8.869741510390269e-4
allele num: 7892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.04344e5

FS
type: SiteQuality
SIO_000300: 1.778e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
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variant carriers: 0

GenotypeQuality
all individuals: 1247
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GenotypeQuality
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GenotypeQuality
all individuals: 3178
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 1485
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0658596041813e-5
allele num: 48406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 9.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 9.08261e5

QD
type: SiteQuality
SIO_000300: 1.18e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 19354
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.044571662236761e-5
allele num: 48910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.71e0

VQSLOD
type: SiteQuality
SIO_000300: -2.116e0

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

DP
type: SiteQuality
SIO_000300: 9.29664e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 1580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 484
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GenotypeQuality
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GenotypeQuality
all individuals: 903
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GenotypeQuality
all individuals: 196
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1036
bin: 4.25e1
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GenotypeQuality
all individuals: 12559
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GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.03111670796604e-5
allele num: 49234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.202e0

VQSLOD
type: SiteQuality
SIO_000300: -4.296e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.54463e5

GenotypeQuality
all individuals: 12874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
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GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 1694
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variant carriers: 3

GenotypeQuality
all individuals: 1072
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GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 3358
bin: 3.75e1
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GenotypeQuality
all individuals: 175
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GenotypeQuality
all individuals: 507
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GenotypeQuality
all individuals: 1682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.05913717886573e-5
allele num: 49512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.998e0

DP
type: SiteQuality
SIO_000300: 9.64242e5

FS
type: SiteQuality
SIO_000300: 1.511e0

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 7.5e0
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GenotypeQuality
all individuals: 5060
bin: 2.75e1
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GenotypeQuality
all individuals: 1752
bin: 6.75e1
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GenotypeQuality
all individuals: 18298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.59846547314578e-4
allele num: 6256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.014098690835851e-5
allele num: 49650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.239e0

DP
type: SiteQuality
SIO_000300: 9.70969e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 912
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2864
bin: 3.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 222

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 4

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16246
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 611
bin: 7.25e1
variant carriers: 6

Other
type: Population
allele count: 1
allele frequency: 1.724137931034483e-3
allele num: 580
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.860592755214051e-4
allele num: 7288
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.735969689793985e-4
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.096972356296621e-4
allele num: 9116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 6.926952141057935e-3
allele num: 4764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 193
allele frequency: 3.819815540513795e-3
allele num: 50526
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.26e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.003858e6

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

FS
type: SiteQuality
SIO_000300: 1.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.905029678225554e-5
allele num: 51216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.051e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 3.988e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 1.033171e6

GenotypeQuality
all individuals: 1064
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2328
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GenotypeQuality
all individuals: 2706
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.098177026136613e-4
allele num: 9106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4976
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

DP
type: SiteQuality
SIO_000300: 1.071935e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
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variant carriers: 0

GenotypeQuality
all individuals: 2039
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 650
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GenotypeQuality
all individuals: 1741
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variant carriers: 17

GenotypeQuality
all individuals: 932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.092896174863388e-4
allele num: 9150
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.706134094151213e-4
allele num: 7010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.305434336652866e-4
allele num: 53622
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.140869192892314e-4
allele num: 9342
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.576655501159495e-4
allele num: 7762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.009e0

QD
type: SiteQuality
SIO_000300: 1.41e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.121852e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

GenotypeQuality
all individuals: 524
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 255
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 25691
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.1654395842356e-4
allele num: 9236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.744e0

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.143304e6

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
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variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 977
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.269680040629761e-4
allele num: 7876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.143304e6

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

FS
type: SiteQuality
SIO_000300: 1.744e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 488
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1868
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GenotypeQuality
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GenotypeQuality
all individuals: 2497
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GenotypeQuality
all individuals: 1773
bin: 9.75e1
variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.078364441862155e-5
allele num: 55076
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.726708074534162e-4
allele num: 8050
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.377410468319559e-4
allele num: 7260
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.126263668248401e-4
allele num: 9694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 1.174421e6

QD
type: SiteQuality
SIO_000300: 1.418e1

FS
type: SiteQuality
SIO_000300: 2.379e0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28115
bin: 6.25e1
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GenotypeQuality
all individuals: 554
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GenotypeQuality
all individuals: 255
bin: 2.5e0
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GenotypeQuality
all individuals: 524
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 3658
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GenotypeQuality
all individuals: 343
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GenotypeQuality
all individuals: 319
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GenotypeQuality
all individuals: 1114
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GenotypeQuality
all individuals: 2253
bin: 2.75e1
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GenotypeQuality
all individuals: 1313
bin: 3.75e1
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GenotypeQuality
all individuals: 787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 9.75e1
variant carriers: 21

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.18945354029343e-4
allele num: 9406
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.722570106180234e-4
allele num: 7346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.708461232891553e-4
allele num: 55382
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.231527093596059e-4
allele num: 8120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.287e1

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.190971e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30682
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.043187982474442e-4
allele num: 9586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.388e0

QD
type: SiteQuality
SIO_000300: 6.76e0

DP
type: SiteQuality
SIO_000300: 1.224365e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.747e1

GenotypeQuality
all individuals: 504
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.18427285646613e-4
allele num: 8444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.236249e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

GenotypeQuality
all individuals: 1644
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 939
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variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.496259002866932e-5
allele num: 57204
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

DP
type: SiteQuality
SIO_000300: 1.242217e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.823e0

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 1657
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 598
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variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.300390117035111e-4
allele num: 7690
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.756e1

QD
type: SiteQuality
SIO_000300: 1.56e1

VQSLOD
type: SiteQuality
SIO_000300: -1.492e0

MQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.788e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 4.212e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 1.247505e6

GenotypeQuality
all individuals: 362
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1132
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variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59026
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.137656427758817e-4
allele num: 8790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.46e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

DP
type: SiteQuality
SIO_000300: 1.296034e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1886
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.970343616422015e-5
allele num: 60358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 1.336143e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 5.233e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 367
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GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.285870755750274e-4
allele num: 9130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.107468123861566e-5
allele num: 10980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
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European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.148689299527288e-4
allele num: 60502
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.908032818164472e-4
allele num: 10482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.359e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 1.342176e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

FS
type: SiteQuality
SIO_000300: 1.777e0

GenotypeQuality
all individuals: 384
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1929
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variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652837922713299e-5
allele num: 60502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10482
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 1.777e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.342176e6

QD
type: SiteQuality
SIO_000300: 1.359e1

GenotypeQuality
all individuals: 395
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1695
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.09090909090909e-5
allele num: 11000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.366e1

FS
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 1.348997e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 9.281603861147206e-4
allele num: 10774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.969436485195798e-4
allele num: 8376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.058e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.744e1

FS
type: SiteQuality
SIO_000300: 2.764e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.19e-1

DP
type: SiteQuality
SIO_000300: 1.369129e6

GenotypeQuality
all individuals: 194
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 1956
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5176
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614987080103359e-5
allele num: 61920
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 4.864e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

DP
type: SiteQuality
SIO_000300: 1.379619e6

QD
type: SiteQuality
SIO_000300: 1.628e1

VQSLOD
type: SiteQuality
SIO_000300: -2.895e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 630
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
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variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1992
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
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variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604775812818949e-5
allele num: 62314
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.393759e6

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 641
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1913
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variant carriers: 0

GenotypeQuality
all individuals: 37341
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 2227
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GenotypeQuality
all individuals: 360
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GenotypeQuality
all individuals: 5586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62360
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041449697979588e-4
allele num: 9602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.396295e6

QD
type: SiteQuality
SIO_000300: 1.304e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 717
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variant carriers: 0

GenotypeQuality
all individuals: 160
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GenotypeQuality
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GenotypeQuality
all individuals: 4721
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 91

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 651
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 82
allele frequency: 9.653873322345186e-3
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62454
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.670464660850988e-4
allele num: 11234
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.195344970906068e-4
allele num: 9624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.857395925597875e-5
allele num: 11290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 1.400251e6

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
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GenotypeQuality
all individuals: 5634
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 1953
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variant carriers: 0

GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 134
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 159
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GenotypeQuality
all individuals: 2098
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GenotypeQuality
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GenotypeQuality
all individuals: 203
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GenotypeQuality
all individuals: 671
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59596539947014e-5
allele num: 62658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

FS
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.408416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
all individuals: 700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 1584
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GenotypeQuality
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GenotypeQuality
all individuals: 655
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2098
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5634
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62658
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.098533360875852e-4
allele num: 9682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

FS
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

DP
type: SiteQuality
SIO_000300: 1.408416e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
all individuals: 677
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

DP
type: SiteQuality
SIO_000300: 1.411387e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

GenotypeQuality
all individuals: 675
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.411387e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

GenotypeQuality
all individuals: 37586
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 641
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.773877343178129e-5
allele num: 62842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.627e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 1.413199e6

QD
type: SiteQuality
SIO_000300: 1.143e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 5.848e1

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591292447726043e-5
allele num: 62842
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.413199e6

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

FS
type: SiteQuality
SIO_000300: 1.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.848e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588007368354189e-5
allele num: 62972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.607717041800643e-4
allele num: 6220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.513536523071684e-5
allele num: 11746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.624e1

DP
type: SiteQuality
SIO_000300: 1.416818e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

FS
type: SiteQuality
SIO_000300: 9.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.799e0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37801
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5764
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.754961009319724e-5
allele num: 63092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.38e0

MQ
type: SiteQuality
SIO_000300: 5.678e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

DP
type: SiteQuality
SIO_000300: 1.422035e6

QD
type: SiteQuality
SIO_000300: 4.92e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 572
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 32609
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 558
bin: 8.75e1
variant carriers: 27

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 528
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3515
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1315
bin: 8.25e1
variant carriers: 31

GenotypeQuality
all individuals: 4806
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1940
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1667
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 10275
bin: 9.75e1
variant carriers: 8450

East Asian
type: Population
allele count: 11
allele frequency: 1.287453183520599e-3
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 589
allele frequency: 4.836590573164723e-2
allele num: 12178
num of homozygotes: 17

Latino
type: Population
allele count: 653
allele frequency: 5.725056987550412e-2
allele num: 11406
num of homozygotes: 26

European (Non-Finnish)
type: Population
allele count: 7151
allele frequency: 1.126390070251709e-1
allele num: 63486
num of homozygotes: 388

African
type: Population
allele count: 200
allele frequency: 2.036245163917736e-2
allele num: 9822
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 339
allele frequency: 5.391221374045801e-2
allele num: 6288
num of homozygotes: 5

Other
type: Population
allele count: 64
allele frequency: 7.901234567901234e-2
allele num: 810
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.542e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

DP
type: SiteQuality
SIO_000300: 1.707574e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

GenotypeQuality
all individuals: 446
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.75e1
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GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571981010469394e-5
allele num: 63614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.507951356407858e-4
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.580433e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.715943031408181e-5
allele num: 63614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.580433e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.157e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 5602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36253
bin: 6.25e1
variant carriers: 0