19-48973585-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973585
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973585
    reference: chr 19
allele count: 4
allele frequency: 3.571556127004536e-5
allele num: 111996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.177-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.163-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.222-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.86-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.20-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.181-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-29-25T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.20-25T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.20-25T>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

19-48973586-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973586
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973586
    reference: chr 19
allele count: 1
allele frequency: 8.924905842243364e-6
allele num: 112046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.86-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.163-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.20-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.177-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-29-24T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.20-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.181-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.222-24T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.20-24T>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/19-48973591-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973591
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973591
    reference: chr 19
allele count: 1
allele frequency: 8.903926631644555e-6
allele num: 112310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.222-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.177-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.20-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.20-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.86-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-29-19C>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.20-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.163-19C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.181-19C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7442
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13745
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-48973592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973592
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973592
    reference: chr 19
allele count: 1
allele frequency: 8.891101785333239e-6
allele num: 112472
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-29-18C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.181-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.20-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.177-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.20-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.222-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.86-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.163-18C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.20-18C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

19-48973598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973598
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973598
    reference: chr 19
allele count: 7
allele frequency: 6.188337635701404e-5
allele num: 113116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.181-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.20-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.222-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-29-12C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.20-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.177-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.20-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.86-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.163-12C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

19-48973604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973604
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973604
    reference: chr 19
allele count: 4
allele frequency: 3.502749658481908e-5
allele num: 114196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.177-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.20-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.20-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.20-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.86-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.222-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.181-6C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-29-6C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.163-6C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4817
  bin: 7.75e1
  variant carriers: 0
hgvs: c.-29-6C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-48973613-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973613
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973613
    reference: chr 19
allele count: 1
allele frequency: 8.657409010631298e-6
allele num: 115508
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.23C>T
  hgvsp: ENSP00000408236.2:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.166C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.184C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.23C>T
  hgvsp: ENSP00000375753.3:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.225C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.89C>T
  hgvsp: ENSP00000314566.5:p.Pro30Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-26C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.23C>T
  hgvsp: ENSP00000391648.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.180C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro8Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-48973614-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973614
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973614
    reference: chr 19
allele count: 3
allele frequency: 2.592509376242244e-5
allele num: 115718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.90C>G
  hgvsp: ENST00000325139.5:c.90C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.24C>G
  hgvsp: ENST00000427476.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.226C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.167C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.24C>G
  hgvsp: ENST00000391881.3:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-25C>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.24C>G
  hgvsp: ENST00000452733.2:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.185C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.181C>G
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro8Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

19-48973638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973638
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973638
    reference: chr 19
allele count: 2
allele frequency: 1.680220444922374e-5
allele num: 119032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.48G>A
  hgvsp: ENST00000452733.2:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.191G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.250G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.209G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.48G>A
  hgvsp: ENST00000391881.3:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.114G>A
  hgvsp: ENST00000325139.5:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.-1G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.48G>A
  hgvsp: ENST00000427476.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.205G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg16Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-48973647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973647
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973647
    reference: chr 19
allele count: 1
allele frequency: 8.351986102295126e-6
allele num: 119732
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.9G>A
  hgvsp: ENST00000595676.1:c.9G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.218G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.57G>A
  hgvsp: ENST00000427476.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.57G>A
  hgvsp: ENST00000391881.3:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.57G>A
  hgvsp: ENST00000452733.2:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.214G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.123G>A
  hgvsp: ENST00000325139.5:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.259G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.200G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu3Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-48973657-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973657
    reference: chr 19
allele count: 2
allele frequency: 1.664946222237022e-5
allele num: 120124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.269C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.228C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.210C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.67C>G
  hgvsp: ENSP00000391648.1:p.Arg23Gly
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.19C>G
  hgvsp: ENSP00000470383.1:p.Arg7Gly
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.133C>G
  hgvsp: ENSP00000314566.5:p.Arg45Gly
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.67C>G
  hgvsp: ENSP00000408236.2:p.Arg23Gly
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.224C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.67C>G
  hgvsp: ENSP00000375753.3:p.Arg23Gly
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg7Gly
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

19-48973659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973659
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973659
    reference: chr 19
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.69G>A
  hgvsp: ENST00000452733.2:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.21G>A
  hgvsp: ENST00000595676.1:c.21G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.69G>A
  hgvsp: ENST00000427476.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.226G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.271G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.135G>A
  hgvsp: ENST00000325139.5:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.212G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.69G>A
  hgvsp: ENST00000391881.3:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.230G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg7Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-48973660-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973660
    reference: chr 19
allele count: 1
allele frequency: 8.3166999334664e-6
allele num: 120240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.231C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.70C>A
  hgvsp: ENST00000391881.3:c.70C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.227C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.272C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.70C>A
  hgvsp: ENST00000427476.1:c.70C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.136C>A
  hgvsp: ENST00000325139.5:c.136C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.70C>A
  hgvsp: ENST00000452733.2:c.70C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.22C>A
  hgvsp: ENST00000595676.1:c.22C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.213C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg8Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

19-48973670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973670
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973670
    reference: chr 19
allele count: 3
allele frequency: 2.489048187972919e-5
allele num: 120528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.237A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.80A>G
  hgvsp: ENSP00000391648.1:p.Gln27Arg
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.80A>G
  hgvsp: ENSP00000408236.2:p.Gln27Arg
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.241A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.32A>G
  hgvsp: ENSP00000470383.1:p.Gln11Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.282A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.146A>G
  hgvsp: ENSP00000314566.5:p.Gln49Arg
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.223A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.80A>G
  hgvsp: ENSP00000375753.3:p.Gln27Arg
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln11Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

19-48973681-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973681
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973681
    reference: chr 19
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.91G>T
  hgvsp: ENSP00000375753.3:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.248G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.157G>T
  hgvsp: ENSP00000314566.5:p.Val53Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.234G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.252G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.43G>T
  hgvsp: ENSP00000470383.1:p.Val15Leu
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.91G>T
  hgvsp: ENSP00000408236.2:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.293G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.91G>T
  hgvsp: ENSP00000391648.1:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val15Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-48973686-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973686
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973686
    reference: chr 19
allele count: 2
allele frequency: 1.657467720816137e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.253G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.96G>T
  hgvsp: ENSP00000408236.2:p.Glu32Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.239G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.96G>T
  hgvsp: ENSP00000375753.3:p.Glu32Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.96G>T
  hgvsp: ENSP00000391648.1:p.Glu32Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.298G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.162G>T
  hgvsp: ENSP00000314566.5:p.Glu54Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.48G>T
  hgvsp: ENSP00000470383.1:p.Glu16Asp
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.257G>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu16Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-48973693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973693
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973693
    reference: chr 19
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.246C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.103C>T
  hgvsp: ENSP00000391648.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.103C>T
  hgvsp: ENSP00000408236.2:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.55C>T
  hgvsp: ENSP00000470383.1:p.Arg19Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.169C>T
  hgvsp: ENSP00000314566.5:p.Arg57Cys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.264C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.305C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.103C>T
  hgvsp: ENSP00000375753.3:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.260C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg19Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-48973700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973700
    reference: chr 19
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.62G>A
  hgvsp: ENSP00000470383.1:p.Arg21Gln
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.312G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.110G>A
  hgvsp: ENSP00000391648.1:p.Arg37Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.110G>A
  hgvsp: ENSP00000375753.3:p.Arg37Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.110G>A
  hgvsp: ENSP00000408236.2:p.Arg37Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.176G>A
  hgvsp: ENSP00000314566.5:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.271G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.253G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.267G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg21Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-48973704-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973704
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973704
    reference: chr 19
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.257G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.114G>C
  hgvsp: ENSP00000391648.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.316G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.271G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.66G>C
  hgvsp: ENSP00000470383.1:p.Glu22Asp
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.275G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.114G>C
  hgvsp: ENSP00000375753.3:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.114G>C
  hgvsp: ENSP00000408236.2:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.180G>C
  hgvsp: ENSP00000314566.5:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu22Asp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

19-48973710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973710
    reference: chr 19
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.120C>T
  hgvsp: ENST00000427476.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.281C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.322C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.277C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.120C>T
  hgvsp: ENST00000452733.2:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.120C>T
  hgvsp: ENST00000391881.3:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.263C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.186C>T
  hgvsp: ENST00000325139.5:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.72C>T
  hgvsp: ENST00000595676.1:c.72C>T(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13722
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu24Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

19-48973720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973720
    reference: chr 19
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.332A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.291A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.130A>G
  hgvsp: ENSP00000375753.3:p.Met44Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.130A>G
  hgvsp: ENSP00000408236.2:p.Met44Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.130A>G
  hgvsp: ENSP00000391648.1:p.Met44Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.196A>G
  hgvsp: ENSP00000314566.5:p.Met66Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.273A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.82A>G
  hgvsp: ENSP00000470383.1:p.Met28Val
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.287A>G
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met28Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-48973725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973725
    reference: chr 19
allele count: 67
allele frequency: 5.552516864734059e-4
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.337C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.135C>T
  hgvsp: ENST00000391881.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.87C>T
  hgvsp: ENST00000595676.1:c.87C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.201C>T
  hgvsp: ENST00000325139.5:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.292C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.135C>T
  hgvsp: ENST00000427476.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.135C>T
  hgvsp: ENST00000452733.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.296C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.278C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser29Ser
num of homozygotes: 2
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

19-48973726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973726
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973726
    reference: chr 19
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.136G>A
  hgvsp: ENSP00000408236.2:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.136G>A
  hgvsp: ENSP00000391648.1:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.88G>A
  hgvsp: ENSP00000470383.1:p.Glu30Lys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.338G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.202G>A
  hgvsp: ENSP00000314566.5:p.Glu68Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.136G>A
  hgvsp: ENSP00000375753.3:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.293G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.297G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.279G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu30Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

19-48973728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973728
    reference: chr 19
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.281G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.299G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.90G>A
  hgvsp: ENST00000595676.1:c.90G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.340G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.204G>A
  hgvsp: ENST00000325139.5:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.138G>A
  hgvsp: ENST00000452733.2:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.295G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.138G>A
  hgvsp: ENST00000427476.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.138G>A
  hgvsp: ENST00000391881.3:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13668
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu30Glu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-48973737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973737
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973737
    reference: chr 19
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.99G>A
  hgvsp: ENST00000595676.1:c.99G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.290G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.349G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.308G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.304G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.147G>A
  hgvsp: ENST00000391881.3:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.147G>A
  hgvsp: ENST00000452733.2:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.213G>A
  hgvsp: ENST00000325139.5:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.147G>A
  hgvsp: ENST00000427476.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly33Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-48973744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973744
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973744
    reference: chr 19
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.297G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.356G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.154G>A
  hgvsp: ENSP00000391648.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.154G>A
  hgvsp: ENSP00000375753.3:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.311G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.154G>A
  hgvsp: ENSP00000408236.2:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.220G>A
  hgvsp: ENSP00000314566.5:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.315G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.106G>A
  hgvsp: ENSP00000470383.1:p.Ala36Thr
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala36Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

19-48973748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973748
    reference: chr 19
allele count: 2
allele frequency: 1.658044833532299e-5
allele num: 120624
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.158A>G
  hgvsp: ENSP00000408236.2:p.Asn53Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.360A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.315A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.158A>G
  hgvsp: ENSP00000375753.3:p.Asn53Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.224A>G
  hgvsp: ENSP00000314566.5:p.Asn75Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.158A>G
  hgvsp: ENSP00000391648.1:p.Asn53Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.110A>G
  hgvsp: ENSP00000470383.1:p.Asn37Ser
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.319A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.301A>G
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13654
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn37Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-48973750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973750
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973750
    reference: chr 19
allele count: 3
allele frequency: 2.488016055996948e-5
allele num: 120578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.226G>A
  hgvsp: ENSP00000314566.5:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.317G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.362G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.112G>A
  hgvsp: ENSP00000470383.1:p.Glu38Lys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.303G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.160G>A
  hgvsp: ENSP00000408236.2:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.160G>A
  hgvsp: ENSP00000375753.3:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.160G>A
  hgvsp: ENSP00000391648.1:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.321G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7746
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu38Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

19-48973753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973753
    reference: chr 19
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.163G>A
  hgvsp: ENSP00000375753.3:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.306G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.229G>A
  hgvsp: ENSP00000314566.5:p.Gly77Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.365G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.320G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.163G>A
  hgvsp: ENSP00000391648.1:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.115G>A
  hgvsp: ENSP00000470383.1:p.Gly39Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.163G>A
  hgvsp: ENSP00000408236.2:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.324G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly39Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-48973763-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973763
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973763
    reference: chr 19
allele count: 1
allele frequency: 8.29476268683953e-6
allele num: 120558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+6G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+6G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+6G>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
hgvs: c.119+6G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

19-48973764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973764
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973764
    reference: chr 19
allele count: 2
allele frequency: 1.659255326209597e-5
allele num: 120536
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+7G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+7G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+7G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
hgvs: c.119+7G>A
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-48973765-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973765
    reference: chr 19
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+8C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+8C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+8C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
hgvs: c.119+8C>A
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-48973772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973772
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973772
    reference: chr 19
allele count: 7
allele frequency: 5.810961132971394e-5
allele num: 120462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+15G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+15G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+15G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12664
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13604
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-48973776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973776
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973776
    reference: chr 19
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+19G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+19G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+19G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

19-48973778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973778
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973778
    reference: chr 19
allele count: 115
allele frequency: 9.547530095475301e-4
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+21C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+21C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+21C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13625
  bin: 9.75e1
  variant carriers: 113
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-48973781-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973781
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973782
    reference: chr 19
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+29dupG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+29dupG
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+29dupG
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-48973781-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973781
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973781
    reference: chr 19
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+24A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+24A>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+24A>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

19-48973782-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973782
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973782
    reference: chr 19
allele count: 1
allele frequency: 8.301097405076952e-6
allele num: 120466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+25G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+25G>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+25G>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

19-48973791-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973791
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973791
    reference: chr 19
allele count: 28
allele frequency: 2.322417968879599e-4
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+34G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+34G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+34G>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12434
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14430
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18666
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS

19-48973799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973799
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973799
    reference: chr 19
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.119+42T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.167+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.328+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.369+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.167+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.167+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.233+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.310+42T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+42T>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13452
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

19-48973811-T-TGCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973811
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973815
    reference: chr 19
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: TGCCC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-48_168-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-48_168-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-48_370-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-48_311-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-48_120-45dupGCCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-48_234-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+55_324+58dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-48_168-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-48_329-45dupGCCC
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7583
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

19-48973814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973814
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-46C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-46C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-46C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+57C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-46C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-46C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-46C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-46C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-46C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7578
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

19-48973819-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973819
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973819
    reference: chr 19
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-41C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-41C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+62C>G
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-48973825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973825
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973825
    reference: chr 19
allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-35C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-35C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+68C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13439
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/19-48973835-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973835
    reference: chr 19
allele count: 2
allele frequency: 1.652510162937502e-5
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-25C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+78C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-25C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-25C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-25C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-25C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-25C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-25C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-25C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-48973835-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973835
    reference: chr 19
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-25C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-25C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-25C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+78C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-25C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-25C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-25C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-25C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-25C>G
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13429
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-48973836-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973836
    reference: chr 19
allele count: 24
allele frequency: 1.98294665873488e-4
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-24C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+79C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-24C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-24C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-24C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-24C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-24C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-24C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-24C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

19-48973846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973846
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973846
    reference: chr 19
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+89C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-14C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-14C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-14C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-14C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-14C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-14C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-14C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-14C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

19-48973848-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973848
    reference: chr 19
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-12C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-12C>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+91C>G
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

19-48973848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973848
    reference: chr 19
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.120-12C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.168-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.370-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.311-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.168-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.234-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+91C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.329-12C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.168-12C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

19-48973872-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973872
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973872
    reference: chr 19
allele count: 2
allele frequency: 1.650709805216243e-5
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.323A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.246A>G
  hgvsp: ENST00000325139.5:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.180A>G
  hgvsp: ENST00000391881.3:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.382A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.180A>G
  hgvsp: ENST00000427476.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.341A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.180A>G
  hgvsp: ENST00000452733.2:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+115A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.132A>G
  hgvsp: ENST00000595676.1:c.132A>G(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln44Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-48973872-A-ACGGAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973872
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973878
    reference: chr 19
allele count: 2
allele frequency: 1.650709805216243e-5
allele num: 121160
alternate allele: ACGGAAC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.252_257dupCCGGAA
  hgvsp: ENSP00000314566.5:p.Asn84_Arg85dup
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.347_352dupCCGGAA
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.186_191dupCCGGAA
  hgvsp: ENSP00000375753.3:p.Asn62_Arg63dup
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.138_143dupCCGGAA
  hgvsp: ENSP00000470383.1:p.Asn46_Arg47dup
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.186_191dupCCGGAA
  hgvsp: ENSP00000391648.1:p.Asn62_Arg63dup
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.186_191dupCCGGAA
  hgvsp: ENSP00000408236.2:p.Asn62_Arg63dup
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.329_334dupCCGGAA
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+121_324+126dupCCGGAA
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.388_393dupCCGGAA
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7794
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn62_Arg63dup
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-48973874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973874
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973874
    reference: chr 19
allele count: 2
allele frequency: 1.650655310158133e-5
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.182G>A
  hgvsp: ENSP00000408236.2:p.Arg61Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.384G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.343G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.325G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.134G>A
  hgvsp: ENSP00000470383.1:p.Arg45Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.248G>A
  hgvsp: ENSP00000314566.5:p.Arg83Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.182G>A
  hgvsp: ENSP00000391648.1:p.Arg61Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.182G>A
  hgvsp: ENSP00000375753.3:p.Arg61Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+117G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15835
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg45Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

19-48973880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973880
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973880
    reference: chr 19
allele count: 2
allele frequency: 1.650655310158133e-5
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.188G>A
  hgvsp: ENSP00000408236.2:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.254G>A
  hgvsp: ENSP00000314566.5:p.Arg85Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.390G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.188G>A
  hgvsp: ENSP00000375753.3:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.349G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.331G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.140G>A
  hgvsp: ENSP00000470383.1:p.Arg47Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.188G>A
  hgvsp: ENSP00000391648.1:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+123G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13425
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg47Gln
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-48973881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973881
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973881
    reference: chr 19
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.391G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+124G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.350G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.141G>A
  hgvsp: ENST00000595676.1:c.141G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.255G>A
  hgvsp: ENST00000325139.5:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.332G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.189G>A
  hgvsp: ENST00000452733.2:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.189G>A
  hgvsp: ENST00000427476.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.189G>A
  hgvsp: ENST00000391881.3:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg47Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

19-48973891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973891
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973891
    reference: chr 19
allele count: 6
allele frequency: 4.952129415648729e-5
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.199A>G
  hgvsp: ENSP00000375753.3:p.Met67Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.342A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.401A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.360A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.265A>G
  hgvsp: ENSP00000314566.5:p.Met89Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+134A>G
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.199A>G
  hgvsp: ENSP00000391648.1:p.Met67Val
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.151A>G
  hgvsp: ENSP00000470383.1:p.Met51Val
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.199A>G
  hgvsp: ENSP00000408236.2:p.Met67Val
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met51Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

19-48973892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973892
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973892
    reference: chr 19
allele count: 3
allele frequency: 2.47610558114198e-5
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.266T>C
  hgvsp: ENSP00000314566.5:p.Met89Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.152T>C
  hgvsp: ENSP00000470383.1:p.Met51Thr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.200T>C
  hgvsp: ENSP00000391648.1:p.Met67Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.200T>C
  hgvsp: ENSP00000375753.3:p.Met67Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.343T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+135T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.402T>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.200T>C
  hgvsp: ENSP00000408236.2:p.Met67Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.361T>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3994
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met51Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-48973897-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973897
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973897
    reference: chr 19
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.271A>C
  hgvsp: ENST00000325139.5:c.271A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.205A>C
  hgvsp: ENST00000452733.2:c.205A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.366A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.407A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.205A>C
  hgvsp: ENST00000427476.1:c.205A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.157A>C
  hgvsp: ENST00000595676.1:c.157A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.205A>C
  hgvsp: ENST00000391881.3:c.205A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.348A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+140A>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg53Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-48973900-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973900
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973900
    reference: chr 19
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.208A>C
  hgvsp: ENSP00000408236.2:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.369A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.351A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.274A>C
  hgvsp: ENSP00000314566.5:p.Lys92Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.160A>C
  hgvsp: ENSP00000470383.1:p.Lys54Gln
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+143A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.208A>C
  hgvsp: ENSP00000375753.3:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.410A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.208A>C
  hgvsp: ENSP00000391648.1:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys54Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/19-48973910-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973910
    reference: chr 19
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.420A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.361A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.284A>C
  hgvsp: ENSP00000314566.5:p.Asn95Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.218A>C
  hgvsp: ENSP00000375753.3:p.Asn73Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.218A>C
  hgvsp: ENSP00000391648.1:p.Asn73Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.170A>C
  hgvsp: ENSP00000470383.1:p.Asn57Thr
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.218A>C
  hgvsp: ENSP00000408236.2:p.Asn73Thr
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.379A>C
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+153A>C
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13417
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn57Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

19-48973915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973915
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973915
    reference: chr 19
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.366G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.289G>A
  hgvsp: ENSP00000314566.5:p.Asp97Asn
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.175G>A
  hgvsp: ENSP00000470383.1:p.Asp59Asn
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.223G>A
  hgvsp: ENSP00000408236.2:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.425G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.384G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.223G>A
  hgvsp: ENSP00000375753.3:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.223G>A
  hgvsp: ENSP00000391648.1:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+158G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp59Asn
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-48973917-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973917
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973917
    reference: chr 19
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+160C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.225C>A
  hgvsp: ENSP00000408236.2:p.Asp75Glu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.177C>A
  hgvsp: ENSP00000470383.1:p.Asp59Glu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.291C>A
  hgvsp: ENSP00000314566.5:p.Asp97Glu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.427C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.386C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.225C>A
  hgvsp: ENSP00000391648.1:p.Asp75Glu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.225C>A
  hgvsp: ENSP00000375753.3:p.Asp75Glu
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.368C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13416
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp59Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/19-48973938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973938
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973938
    reference: chr 19
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+12C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+12C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+12C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+12C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+12C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+12C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+12C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+181C>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+12C>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21223
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-48973954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973954
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973954
    reference: chr 19
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+28G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+28G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+28G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+28G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+28G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+28G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+197G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+28G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+28G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

19-48973956-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973956
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973956
    reference: chr 19
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+30T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+30T>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+199T>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

19-48973958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973958
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973958
    reference: chr 19
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+32G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+32G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+32G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+32G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+32G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+32G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+32G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+201G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+32G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-48973964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973964
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973964
    reference: chr 19
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+38C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+38C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+207C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-48973971-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973971
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973971
    reference: chr 19
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+214G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+45G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+45G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+45G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+45G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+45G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+45G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+45G>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+45G>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13381
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

19-48973976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973976
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973976
    reference: chr 19
allele count: 2
allele frequency: 1.663284654535777e-5
allele num: 120244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+50G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+50G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+50G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+50G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+50G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+50G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+219G>A
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+50G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+50G>A
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

19-48973978-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48973978
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 48973978
    reference: chr 19
allele count: 2
allele frequency: 1.666444474070124e-5
allele num: 120016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000314566
  ensembl transcript: ENST00000325139
  gene symbol: CYTH2
  hgvsc: ENST00000325139.5:c.300+52C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000493260
  gene symbol: CYTH2
  hgvsc: ENST00000493260.1:n.395+52C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000474049
  gene symbol: CYTH2
  hgvsc: ENST00000474049.1:n.377+52C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000268465
  ensembl protein: ENSP00000470383
  ensembl transcript: ENST00000595676
  gene symbol: CTC-273B12.7
  hgvsc: ENST00000595676.1:c.186+52C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000408236
  ensembl transcript: ENST00000452733
  gene symbol: CYTH2
  hgvsc: ENST00000452733.2:c.234+52C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000460595
  gene symbol: CYTH2
  hgvsc: ENST00000460595.1:n.436+52C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000391648
  ensembl transcript: ENST00000427476
  gene symbol: CYTH2
  hgvsc: ENST00000427476.1:c.234+52C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl transcript: ENST00000462117
  gene symbol: CYTH2
  hgvsc: ENST00000462117.1:n.324+221C>T
  variant of: http://identifiers.org/hgnc/9502
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105443
  ensembl protein: ENSP00000375753
  ensembl transcript: ENST00000391881
  gene symbol: CYTH2
  hgvsc: ENST00000391881.3:c.234+52C>T
  variant of: http://identifiers.org/hgnc/9502
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 7430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13749
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.713646005185011e-4
allele num: 8486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.396e1

MQ
type: SiteQuality
SIO_000300: 5.906e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 2.056616e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeQuality
all individuals: 193
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13746
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3055
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.04887770086008e-4
allele num: 9534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64022
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

FS
type: SiteQuality
SIO_000300: 5.408e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 2.055995e6

QD
type: SiteQuality
SIO_000300: 1.418e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559721745640578e-5
allele num: 64114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.205e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.538e0

FS
type: SiteQuality
SIO_000300: 9.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -1.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.47e-1

DP
type: SiteQuality
SIO_000300: 2.059933e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13744
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558846453624318e-5
allele num: 64150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.188e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.681e0

FS
type: SiteQuality
SIO_000300: 3.87e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 2.060835e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13743
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.223684210526315e-4
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.193e0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 2.067956e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13739
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64578
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.689331770222743e-4
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.872e0

DP
type: SiteQuality
SIO_000300: 2.076542e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.124e1

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540309910353963e-5
allele num: 64922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

DP
type: SiteQuality
SIO_000300: 2.087922e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

GenotypeQuality
all individuals: 17148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13734
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3060
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.616236843724996e-5
allele num: 64988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 5.614e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 6.22e0

DP
type: SiteQuality
SIO_000300: 2.089403e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.99e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.041455032087351e-5
allele num: 65758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

FS
type: SiteQuality
SIO_000300: 2.983e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

QD
type: SiteQuality
SIO_000300: 1.126e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515978412467406e-5
allele num: 65964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 3.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.045e0

DP
type: SiteQuality
SIO_000300: 2.132781e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.231982259455464e-4
allele num: 16234
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66068
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 2.183e0

QD
type: SiteQuality
SIO_000300: 2.671e1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

DP
type: SiteQuality
SIO_000300: 2.136627e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513042425709617e-5
allele num: 66092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

QD
type: SiteQuality
SIO_000300: 1.787e1

FS
type: SiteQuality
SIO_000300: 8.663e0

MQRankSum
type: SiteQuality
SIO_000300: -1.213e0

DP
type: SiteQuality
SIO_000300: 2.136721e6

VQSLOD
type: SiteQuality
SIO_000300: -1.347e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.209e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.631e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10244
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South Asian
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allele count: 3
allele frequency: 1.83127823220608e-4
allele num: 16382
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66220
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
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African
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allele frequency: 0.0e0
allele num: 10276
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Latino
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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allele num: 16424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019961948479449e-5
allele num: 66226
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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East Asian
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Other
type: Population
allele count: 0
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DP
type: SiteQuality
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQRankSum
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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SIO_000300: -3.0e-4

FS
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SIO_000300: 1.56e0

ReadPosRankSum
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BaseQRankSum
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SIO_000300: 9.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.443e0

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
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MQRankSum
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ClippingRankSum
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SIO_000300: -5.629999999999999e-1

DP
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SIO_000300: 2.14149e6

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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FS
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SIO_000300: 0.0e0

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: -1.381e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.782e0

VQSLOD
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SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 2.140406e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

FS
type: SiteQuality
SIO_000300: 3.999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.607e1

DP
type: SiteQuality
SIO_000300: 2.138309e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 64

GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 7.749248207263475e-3
allele num: 8646
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Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66262
num of homozygotes: 0

Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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ClippingRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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African
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Latino
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East Asian
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European (Finnish)
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MQ
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DP
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66254
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
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QD
type: SiteQuality
SIO_000300: 1.664e1

DP
type: SiteQuality
SIO_000300: 2.129079e6

MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.831e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509707418702255e-5
allele num: 66238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16356
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

FS
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VQSLOD
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QD
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.746e0

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.940617116242965e-4
allele num: 10306
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 2.125447e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469010175763182e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.122286e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.585e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.119951040391677e-5
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.517e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.121752e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele frequency: 1.941370607649e-4
allele num: 10302
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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East Asian
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allele frequency: 1.15606936416185e-4
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European (Non-Finnish)
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European (Finnish)
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African
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VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 8.0e-4

BaseQRankSum
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FS
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QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele num: 16264
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Latino
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allele frequency: 3.462603878116343e-4
allele num: 11552
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.510665296996797e-5
allele num: 66196
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ReadPosRankSum
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
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FS
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QD
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510072181450273e-5
allele num: 66222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.54e-1

DP
type: SiteQuality
SIO_000300: 2.112149e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.795e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3604
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 111
allele frequency: 1.285019680481593e-2
allele num: 8638
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230314960629921e-4
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.06e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.998e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

DP
type: SiteQuality
SIO_000300: 2.111793e6

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
all individuals: 392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18265
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510345869204048e-5
allele num: 66210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.108935e6

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 1.2044e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.034e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 3020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 584
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13520
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510345869204048e-5
allele num: 66210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

DP
type: SiteQuality
SIO_000300: 2.108935e6

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 1.2044e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.034e1

GenotypeQuality
all individuals: 4728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
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variant carriers: 0

GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
all individuals: 817
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variant carriers: 0

GenotypeQuality
all individuals: 3015
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variant carriers: 0

GenotypeQuality
all individuals: 3616
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variant carriers: 0

GenotypeQuality
all individuals: 596
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
all individuals: 7600
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GenotypeQuality
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GenotypeQuality
all individuals: 17736
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.655e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 2.10769e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.466e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.459e1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 4048
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13492
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 7539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.228074414109688e-4
allele num: 66224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.322e1

DP
type: SiteQuality
SIO_000300: 2.105727e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 1.731e0

GenotypeQuality
all individuals: 283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 753
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
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GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7575
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

FS
type: SiteQuality
SIO_000300: 2.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.104198e6

QD
type: SiteQuality
SIO_000300: 1.462e1

GenotypeQuality
all individuals: 4624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
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GenotypeQuality
all individuals: 3551
bin: 7.25e1
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GenotypeQuality
all individuals: 13447
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4013
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GenotypeQuality
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GenotypeQuality
all individuals: 629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
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GenotypeQuality
all individuals: 19751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.14e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

FS
type: SiteQuality
SIO_000300: 2.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.614e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: -2.416e0

DP
type: SiteQuality
SIO_000300: 2.106646e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.824e0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 20032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.209e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
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SIO_000300: 9.26e0

MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.10819e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505434618974498e-5
allele num: 66426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.027e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.110524e6

InbreedingCoeff
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SIO_000300: 8.9e-3

FS
type: SiteQuality
SIO_000300: 7.555e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: -1.027e0

QD
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SIO_000300: 1.03e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.966e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 7.6e0

DP
type: SiteQuality
SIO_000300: 2.112389e6

MQRankSum
type: SiteQuality
SIO_000300: -1.389e0

VQSLOD
type: SiteQuality
SIO_000300: -1.359e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006976184748617e-5
allele num: 66512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

FS
type: SiteQuality
SIO_000300: 6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

DP
type: SiteQuality
SIO_000300: 2.116009e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.941e0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

FS
type: SiteQuality
SIO_000300: 6.01e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.941e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.597402597402597e-4
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.940240589833139e-3
allele num: 10308
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Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66564
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele num: 66576
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Other
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -4.05e-1

BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.86e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
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InbreedingCoeff
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MQRankSum
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QD
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 5.94e-1

ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 2.29e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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MQRankSum
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FS
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -1.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.95e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele frequency: 1.212121212121212e-4
allele num: 16500
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.002912825440678e-5
allele num: 66602
num of homozygotes: 0

Other
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African
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allele count: 2
allele frequency: 1.935733643050716e-4
allele num: 10332
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16500
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Latino
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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BaseQRankSum
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MQ
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FS
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MQRankSum
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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QD
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.06060606060606e-5
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.703e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.023e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

DP
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

MQRankSum
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SIO_000300: -1.404e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.623e0

ReadPosRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -5.669999999999999e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.272e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 5.649999999999999e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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SIO_000300: 1.005e1

ReadPosRankSum
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SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
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SIO_000300: 2.116991e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

FS
type: SiteQuality
SIO_000300: 4.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

MQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.378e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.817e0

FS
type: SiteQuality
SIO_000300: 1.0494e1

DP
type: SiteQuality
SIO_000300: 2.109002e6

VQSLOD
type: SiteQuality
SIO_000300: -2.14e0

BaseQRankSum
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QD
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SIO_000300: 1.107e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.668515950069348e-5
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num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

QD
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
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MQRankSum
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DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

South Asian
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allele num: 16420
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2944
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.307e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.887e0

DP
type: SiteQuality
SIO_000300: 2.035522e6

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13378
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2715
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-5
allele num: 66020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.024374e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.289e1

FS
type: SiteQuality
SIO_000300: 6.046e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e0