19-55246806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246806
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246806
    reference: chr 19
allele count: 2
allele frequency: 2.458331284723929e-5
allele num: 81356
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1036T>C
  hgvsp: ENSP00000291860.1:p.Trp346Arg
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10771T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10771T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10771T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10771T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10771T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10795
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15750
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp346Arg
num of homozygotes: 1
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-55246808-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246808
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246808
    reference: chr 19
allele count: 5
allele frequency: 6.298974526947014e-5
allele num: 79378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1038G>C
  hgvsp: ENSP00000291860.1:p.Trp346Cys
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10773G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10773G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10773G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10773G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10773G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4702
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp346Cys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

19-55246812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246812
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246812
    reference: chr 19
allele count: 6295
allele frequency: 8.192987479501262e-2
allele num: 76834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10777G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1042G>C
  hgvsp: ENSP00000291860.1:p.Ala348Pro
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10777G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10777G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10777G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10777G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.25e1
  variant carriers: 540
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.75e1
  variant carriers: 714
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 9.75e1
  variant carriers: 422
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 1.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 2.75e1
  variant carriers: 623
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 7.5e0
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.25e1
  variant carriers: 744
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 3.25e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 2.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 5035
  bin: 7.5e0
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 16040
  bin: 2.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.25e1
  variant carriers: 47
hgvs: p.Ala348Pro
num of homozygotes: 1548
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-55246814-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246814
    reference: chr 19
allele count: 1
allele frequency: 1.347236817287743e-5
allele num: 74226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10779C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10779C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1044C>A
  hgvsp: ENST00000291860.1:c.1044C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10779C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10779C>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10779C>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala348Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-55246817-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246817
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246817
    reference: chr 19
allele count: 1
allele frequency: 1.37001315212626e-5
allele num: 72992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10782C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10782C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10782C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10782C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1047C>G
  hgvsp: ENSP00000291860.1:p.Asn349Lys
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10782C>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn349Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

19-55246829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246829
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 66808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10794G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+5G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10794G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10794G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10794G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10794G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1054+5G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-55246829-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246829
    reference: chr 19
allele count: 703
allele frequency: 1.052269189318644e-2
allele num: 66808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10794G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10794G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+5G>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10794G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10794G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10794G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 1.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 9.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7585
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 18365
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8576
  bin: 6.25e1
  variant carriers: 14
hgvs: c.1054+5G>C
num of homozygotes: 175
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

19-55246831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246831
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246831
    reference: chr 19
allele count: 2
allele frequency: 3.025627061208436e-5
allele num: 66102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10796C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+7C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10796C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10796C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10796C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10796C>T
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1054+7C>T
num of homozygotes: 1
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-55246835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246835
    reference: chr 19
allele count: 9
allele frequency: 1.408098128794042e-4
allele num: 63916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10800C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10800C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10800C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10800C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10800C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+11C>T
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8331
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7752
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

19-55246836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246836
    reference: chr 19
allele count: 2
allele frequency: 3.166861956487317e-5
allele num: 63154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10801G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10801G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10801G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+12G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10801G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10801G>A
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-55246839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246839
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246839
    reference: chr 19
allele count: 2
allele frequency: 3.22622273841786e-5
allele num: 61992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10804G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10804G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+15G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10804G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10804G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10804G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

19-55246845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246845
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246845
    reference: chr 19
allele count: 1
allele frequency: 1.664558226246754e-5
allele num: 60076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10810G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10810G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10810G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10810G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10810G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+21G>A
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14059
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

19-55246855-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246855
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246855
    reference: chr 19
allele count: 2
allele frequency: 3.516174402250352e-5
allele num: 56880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10820T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10820T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10820T>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10820T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10820T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+31T>A
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4485
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-55246860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246860
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246860
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 55026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10825G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10825G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10825G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10825G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+36G>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10825G>C
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10548
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4566
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

19-55246868-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246868
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246868
    reference: chr 19
allele count: 1
allele frequency: 1.86811133943583e-5
allele num: 53530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10833G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10833G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10833G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+44G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10833G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10833G>A
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12182
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

19-55246870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55246870
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55246870
    reference: chr 19
allele count: 2
allele frequency: 3.775009437523594e-5
allele num: 52980
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+10835G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+10835G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+10835G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+10835G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+10835G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1054+46G>A
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9902
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-55247237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247237
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247237
    reference: chr 19
allele count: 1
allele frequency: 9.386498460614252e-6
allele num: 106536
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-50G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11202G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11202G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11202G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11202G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11202G>A
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

19-55247239-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247239
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247239
    reference: chr 19
allele count: 5
allele frequency: 4.690255525121009e-5
allele num: 106604
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11204A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11204A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11204A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11204A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11204A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-48A>G
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25273
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-55247240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247240
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247240
    reference: chr 19
allele count: 1
allele frequency: 9.389495032957127e-6
allele num: 106502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11205C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11205C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-47C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11205C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11205C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11205C>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

19-55247252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247252
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247252
    reference: chr 19
allele count: 1
allele frequency: 9.380511050242018e-6
allele num: 106604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11217C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11217C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11217C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11217C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11217C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-35C>T
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55247253-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247253
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247253
    reference: chr 19
allele count: 219
allele frequency: 2.053484359762959e-3
allele num: 106648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-34T>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11218T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11218T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11218T>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11218T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11218T>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10158
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 57
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

19-55247255-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247255
    reference: chr 19
allele count: 13
allele frequency: 1.219786818795977e-4
allele num: 106576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11220C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11220C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11220C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11220C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-32C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11220C>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

19-55247256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247256
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247256
    reference: chr 19
allele count: 17
allele frequency: 1.594896331738437e-4
allele num: 106590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11221G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11221G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11221G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-31G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11221G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11221G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-55247267-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247267
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247267
    reference: chr 19
allele count: 3
allele frequency: 2.824486414220348e-5
allele num: 106214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11232A>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11232A>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11232A>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-20A>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11232A>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11232A>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

19-55247268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247268
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247268
    reference: chr 19
allele count: 5
allele frequency: 4.719207173194903e-5
allele num: 105950
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11233C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11233C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11233C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11233C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11233C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-19C>T
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-55247275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247275
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247275
    reference: chr 19
allele count: 433
allele frequency: 4.115578367075373e-3
allele num: 105210
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-12C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11240C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11240C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11240C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11240C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11240C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8516
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 9.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 10815
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 25364
  bin: 9.75e1
  variant carriers: 282
num of homozygotes: 104
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-55247276-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247276
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247276
    reference: chr 19
allele count: 2
allele frequency: 1.90334798911285e-5
allele num: 105078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11241G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11241G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11241G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-11G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11241G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11241G>A
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25308
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

19-55247286-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247286
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247286
    reference: chr 19
allele count: 1
allele frequency: 9.504619244953047e-6
allele num: 105212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11251G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11251G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11251G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1055-1G>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11251G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11251G>C
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1055-1G>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

19-55247288-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247288
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247288
    reference: chr 19
allele count: 2
allele frequency: 1.900381976777332e-5
allele num: 105242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11253T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11253T>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1056T>C
  hgvsp: ENST00000291860.1:c.1056T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11253T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11253T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11253T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1056T>C
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

19-55247293-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247293
    reference: chr 19
allele count: 8
allele frequency: 7.601383451788225e-5
allele num: 105244
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1061T>C
  hgvsp: ENSP00000291860.1:p.Val354Ala
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11258T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11258T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11258T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11258T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11258T>C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25321
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Val354Ala
num of homozygotes: 3
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-55247297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247297
    reference: chr 19
allele count: 1
allele frequency: 9.510404382394339e-6
allele num: 105148
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11262A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11262A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11262A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11262A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1065A>G
  hgvsp: ENST00000291860.1:c.1065A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11262A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val355Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

19-55247302-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247302
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247302
    reference: chr 19
allele count: 1
allele frequency: 9.522721212813774e-6
allele num: 105012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11267A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11267A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1070A>G
  hgvsp: ENSP00000291860.1:p.Asp357Gly
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11267A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11267A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11267A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp357Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-55247306-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247306
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247306
    reference: chr 19
allele count: 11707
allele frequency: 1.114061132046744e-1
allele num: 105084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11271A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11271A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11271A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1074A>G
  hgvsp: ENST00000291860.1:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11271A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11271A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 2.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 3.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 4.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 6.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 5.75e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 8.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 9.75e1
  variant carriers: 5022
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 10638
  bin: 6.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 6.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 7.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 47
hgvs: p.Gln358Gln
num of homozygotes: 3245
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-55247308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247308
    reference: chr 19
allele count: 3
allele frequency: 2.851656812608125e-5
allele num: 105202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11273A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1076A>G
  hgvsp: ENSP00000291860.1:p.Glu359Gly
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11273A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11273A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11273A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11273A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu359Gly
num of homozygotes: 1
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

19-55247310-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247310
    reference: chr 19
allele count: 2
allele frequency: 1.90095998479232e-5
allele num: 105210
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1078C>G
  hgvsp: ENSP00000291860.1:p.Pro360Ala
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11275C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11275C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11275C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11275C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11275C>G
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro360Ala
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

19-55247313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247313
    reference: chr 19
allele count: 1
allele frequency: 9.502632229127468e-6
allele num: 105234
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1081G>A
  hgvsp: ENSP00000291860.1:p.Ala361Thr
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11278G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11278G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11278G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11278G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11278G>A
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala361Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

19-55247322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247322
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247322
    reference: chr 19
allele count: 1
allele frequency: 9.498480243161095e-6
allele num: 105280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11287A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11287A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1090A>G
  hgvsp: ENSP00000291860.1:p.Arg364Gly
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11287A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11287A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11287A>G
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25942
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg364Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-55247326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247326
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247326
    reference: chr 19
allele count: 3
allele frequency: 2.848191398461977e-5
allele num: 105330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11291C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11291C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11291C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11291C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11291C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1094C>T
  hgvsp: ENSP00000291860.1:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr365Ile
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-55247335-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247335
    reference: chr 19
allele count: 1
allele frequency: 9.485506146607983e-6
allele num: 105424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11300G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11300G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11300G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11300G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11300G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1103G>C
  hgvsp: ENSP00000291860.1:p.Arg368Thr
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg368Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-55247336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247336
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247336
    reference: chr 19
allele count: 2
allele frequency: 1.897101229321597e-5
allele num: 105424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11301G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11301G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11301G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1104G>A
  hgvsp: ENST00000291860.1:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11301G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11301G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25943
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg368Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-55247336-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247336
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247336
    reference: chr 19
allele count: 3
allele frequency: 2.845651843982395e-5
allele num: 105424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11301G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11301G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11301G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11301G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1104G>C
  hgvsp: ENSP00000291860.1:p.Arg368Ser
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11301G>C
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25943
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Arg368Ser
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-55247339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247339
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247339
    reference: chr 19
allele count: 40
allele frequency: 3.794130480147212e-4
allele num: 105426
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107G>A
  hgvsp: ENST00000291860.1:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11304G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11304G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11304G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11304G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11304G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25956
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1107G>A
num of homozygotes: 12
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

19-55247341-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247341
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247341
    reference: chr 19
allele count: 1
allele frequency: 9.485326200368031e-6
allele num: 105426
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+2T>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11306T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11306T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11306T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11306T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11306T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25946
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1107+2T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

19-55247344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247344
    reference: chr 19
allele count: 1
allele frequency: 9.485506146607983e-6
allele num: 105424
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+5G>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11309G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11309G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11309G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11309G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11309G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25946
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1107+5G>C
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55247347-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247347
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247347
    reference: chr 19
allele count: 1
allele frequency: 9.486585967442037e-6
allele num: 105412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11312C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11312C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11312C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11312C>G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+8C>G
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11312C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1107+8C>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS

19-55247349-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247349
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247349
    reference: chr 19
allele count: 10
allele frequency: 9.487125970058631e-5
allele num: 105406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11314C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11314C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11314C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+10C>G
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11314C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11314C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12161
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55247350-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247350
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247350
    reference: chr 19
allele count: 1
allele frequency: 9.487125970058631e-6
allele num: 105406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+11C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11315C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11315C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11315C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11315C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11315C>T
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-55247353-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247353
    reference: chr 19
allele count: 54
allele frequency: 5.124603792206806e-4
allele num: 105374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11318C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11318C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11318C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+14C>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11318C>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11318C>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.5e0
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12098
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 25975
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 3
num of homozygotes: 7
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-55247353-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247353
    reference: chr 19
allele count: 7
allele frequency: 6.643004915823637e-5
allele num: 105374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11318C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11318C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11318C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11318C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+14C>G
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11318C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25975
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 2
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-55247353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247353
    reference: chr 19
allele count: 1
allele frequency: 9.490007022605197e-6
allele num: 105374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11318C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+14C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11318C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11318C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11318C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11318C>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25975
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-55247354-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247354
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247354
    reference: chr 19
allele count: 1
allele frequency: 9.487666034155598e-6
allele num: 105400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11319G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+15G>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11319G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11319G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11319G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11319G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

19-55247354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247354
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247354
    reference: chr 19
allele count: 1
allele frequency: 9.487666034155598e-6
allele num: 105400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11319G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11319G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11319G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11319G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11319G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+15G>A
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25946
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-55247359-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247359
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247359
    reference: chr 19
allele count: 1
allele frequency: 9.489466691971911e-6
allele num: 105380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11324G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11324G>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11324G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11324G>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11324G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+20G>T
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25946
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

19-55247364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247364
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247364
    reference: chr 19
allele count: 3
allele frequency: 2.847704749971523e-5
allele num: 105348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+25G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11329G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11329G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11329G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11329G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11329G>A
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12042
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25946
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

19-55247367-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247367
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247367
    reference: chr 19
allele count: 12
allele frequency: 1.13986093696569e-4
allele num: 105276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11332G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+28G>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11332G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11332G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11332G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11332G>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-55247370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247370
    reference: chr 19
allele count: 2
allele frequency: 1.901212973877334e-5
allele num: 105196
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11335A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11335A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11335A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11335A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11335A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+31A>G
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11942
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-55247371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247371
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247371
    reference: chr 19
allele count: 14
allele frequency: 1.333155579256099e-4
allele num: 105014
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11336G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11336G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11336G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11336G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11336G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+32G>A
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25885
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

19-55247373-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247373
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247373
    reference: chr 19
allele count: 4
allele frequency: 3.806985818977824e-5
allele num: 105070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11338C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+34C>G
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11338C>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11338C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11338C>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11338C>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-55247374-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247374
    reference: chr 19
allele count: 70
allele frequency: 6.663747310701978e-4
allele num: 105046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11339T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11339T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+35T>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11339T>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11339T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11339T>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 20
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55247374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247374
    reference: chr 19
allele count: 12
allele frequency: 1.142356681834625e-4
allele num: 105046
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11339T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+35T>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11339T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11339T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11339T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11339T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-55247375-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247375
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247375
    reference: chr 19
allele count: 2
allele frequency: 1.904217842521185e-5
allele num: 105030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11340T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11340T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11340T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+36T>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11340T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11340T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25941
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-55247379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247379
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247379
    reference: chr 19
allele count: 238
allele frequency: 2.267703331046574e-3
allele num: 104952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11344C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11344C>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11344C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+40C>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11344C>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11344C>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 64
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

19-55247382-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247382
    reference: chr 19
allele count: 1
allele frequency: 9.52943642912958e-6
allele num: 104938
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+43A>T
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11347A>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11347A>T
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11347A>T
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11347A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11347A>T
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25942
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55247385-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247385
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247385
    reference: chr 19
allele count: 3
allele frequency: 2.860193730455343e-5
allele num: 104888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11350G>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11350G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11350G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11350G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11350G>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+46G>C
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25949
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

19-55247386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247386
    reference: chr 19
allele count: 4
allele frequency: 3.813809805305009e-5
allele num: 104882
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11351A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11351A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+47A>G
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11351A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11351A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11351A>G
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25945
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

19-55247388-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247388
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247388
    reference: chr 19
allele count: 3
allele frequency: 2.862267679273366e-5
allele num: 104812
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11353T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11353T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11353T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11353T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11353T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1107+49T>C
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25944
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-55247391-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247391
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247391
    reference: chr 19
allele count: 3
allele frequency: 2.863797777692924e-5
allele num: 104756
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11356T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11356T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-47T>C
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11356T>C
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11356T>C
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11356T>C
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-55247393-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247393
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247393
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 104716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11358G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11358G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11358G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11358G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-45G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11358G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 25948
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-55247397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247397
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247397
    reference: chr 19
allele count: 2
allele frequency: 1.910949742021785e-5
allele num: 104660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11362A>G
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11362A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11362A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11362A>G
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-41A>G
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11362A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-55247398-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247398
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247398
    reference: chr 19
allele count: 1
allele frequency: 9.558950044927066e-6
allele num: 104614
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-40T>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11363T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11363T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11363T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11363T>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11363T>A
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-55247401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247401
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247401
    reference: chr 19
allele count: 483
allele frequency: 4.619799139167862e-3
allele num: 104550
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-37G>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11366G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11366G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11366G>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11366G>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11366G>A
  variant of: http://identifiers.org/hgnc/6338
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 9.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26039
  bin: 9.75e1
  variant carriers: 316
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11351
  bin: 6.25e1
  variant carriers: 4
num of homozygotes: 142
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-55247406-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247406
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247406
    reference: chr 19
allele count: 2
allele frequency: 1.917030902538149e-5
allele num: 104328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11371C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-32C>A
  variant of: http://identifiers.org/hgnc/16312
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11371C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11371C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11371C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11371C>A
  variant of: http://identifiers.org/hgnc/6332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25918
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-55247411-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55247411
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55247411
    reference: chr 19
allele count: 2
allele frequency: 1.920049153258323e-5
allele num: 104164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215765
  ensembl transcript: ENST00000400864
  gene symbol: CTB-61M7.1
  hgvsc: ENST00000400864.3:n.35+11376C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000443350
  ensembl transcript: ENST00000538269
  gene symbol: KIR3DL1
  hgvsc: ENST00000538269.1:c.34+11376C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000442355
  ensembl transcript: ENST00000541392
  gene symbol: KIR3DL1
  hgvsc: ENST00000541392.1:c.34+11376C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167633
  ensembl protein: ENSP00000384528
  ensembl transcript: ENST00000402254
  gene symbol: KIR3DL1
  hgvsc: ENST00000402254.2:c.34+11376C>A
  variant of: http://identifiers.org/hgnc/6338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189013
  ensembl protein: ENSP00000379580
  ensembl transcript: ENST00000396284
  gene symbol: KIR2DL4
  hgvsc: ENST00000396284.2:c.34+11376C>A
  variant of: http://identifiers.org/hgnc/6332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242019
  ensembl protein: ENSP00000291860
  ensembl transcript: ENST00000291860
  gene symbol: KIR3DL3
  hgvsc: ENST00000291860.1:c.1108-27C>A
  variant of: http://identifiers.org/hgnc/16312
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
reference allele: C

GenotypeQuality
all individuals: 2020
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.410800385728062e-4
allele num: 8296
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.353723e6

VQSLOD
type: SiteQuality
SIO_000300: -3.222e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 3.44e1

QD
type: SiteQuality
SIO_000300: 2.916e1

GenotypeQuality
all individuals: 311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15822
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.625346901017577e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.377782004945787e-5
allele num: 42056
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.44e-1

MQ
type: SiteQuality
SIO_000300: 3.197e1

MQRankSum
type: SiteQuality
SIO_000300: -1.716e0

FS
type: SiteQuality
SIO_000300: 2.3417e1

QD
type: SiteQuality
SIO_000300: 6.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.322323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.55e0

GenotypeQuality
all individuals: 566
bin: 5.25e1
variant carriers: 158

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 121

GenotypeQuality
all individuals: 14005
bin: 6.25e1
variant carriers: 124

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 189

GenotypeQuality
all individuals: 6281
bin: 9.75e1
variant carriers: 3298

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 54

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 93

Latino
type: Population
allele count: 304
allele frequency: 3.611309099548586e-2
allele num: 8418
num of homozygotes: 59

Other
type: Population
allele count: 40
allele frequency: 7.782101167315175e-2
allele num: 514
num of homozygotes: 11

East Asian
type: Population
allele count: 1
allele frequency: 1.324503311258278e-4
allele num: 7550
num of homozygotes: 0

South Asian
type: Population
allele count: 594
allele frequency: 7.526609224531171e-2
allele num: 7892
num of homozygotes: 164

African
type: Population
allele count: 1531
allele frequency: 1.889656874845717e-1
allele num: 8102
num of homozygotes: 435

European (Non-Finnish)
type: Population
allele count: 3442
allele frequency: 8.51053308278113e-2
allele num: 40444
num of homozygotes: 805

European (Finnish)
type: Population
allele count: 383
allele frequency: 9.785385794583547e-2
allele num: 3914
num of homozygotes: 74

FS
type: SiteQuality
SIO_000300: 1.5483e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
SIO_000300: 1.303145e6

VQSLOD
type: SiteQuality
SIO_000300: 5.119e1

QD
type: SiteQuality
SIO_000300: 1.853e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.975e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.293e1

GenotypeQuality
all individuals: 565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.56213169356905e-5
allele num: 39030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.461e0

MQRankSum
type: SiteQuality
SIO_000300: -4.494e0

VQSLOD
type: SiteQuality
SIO_000300: -6.6e0

FS
type: SiteQuality
SIO_000300: 1.0489e1

DP
type: SiteQuality
SIO_000300: 1.19967e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 3.02e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.61110240743642e-5
allele num: 38298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: -3.703e0

VQSLOD
type: SiteQuality
SIO_000300: -6.079e0

DP
type: SiteQuality
SIO_000300: 1.178779e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.034e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 1213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.068e1

DP
type: SiteQuality
SIO_000300: 1.066528e6

MQ
type: SiteQuality
SIO_000300: 3.187e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 2.041e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

GenotypeQuality
all individuals: 1213
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3596
bin: 9.75e1
variant carriers: 390

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 168
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

African
type: Population
allele count: 662
allele frequency: 9.056087551299589e-2
allele num: 7310
num of homozygotes: 164

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 3.912574203993524e-3
allele num: 7412
num of homozygotes: 7

Other
type: Population
allele count: 3
allele frequency: 6.521739130434782e-3
allele num: 460
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.302290779325429e-4
allele num: 34748
num of homozygotes: 3

South Asian
type: Population
allele count: 1
allele frequency: 1.502855425308085e-4
allele num: 6654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 2.041e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.066528e6

VQSLOD
type: SiteQuality
SIO_000300: 1.068e1

MQ
type: SiteQuality
SIO_000300: 3.187e1

GenotypeQuality
all individuals: 8553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1672
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34452
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.03951367781155e-4
allele num: 6580
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6912
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.049232e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: -6.716e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.256e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

QD
type: SiteQuality
SIO_000300: 2.255e1

MQ
type: SiteQuality
SIO_000300: 3.207e1

GenotypeQuality
all individuals: 18688
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.411091018685955e-4
allele num: 33180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.473622163277336e-4
allele num: 6786
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.252e0

FS
type: SiteQuality
SIO_000300: 8.126000000000001e1

MQ
type: SiteQuality
SIO_000300: 3.007e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

MQRankSum
type: SiteQuality
SIO_000300: -1.065e0

VQSLOD
type: SiteQuality
SIO_000300: -6.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 1.021497e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

GenotypeQuality
all individuals: 8525
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.589825119236884e-4
allele num: 6290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7008
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.489425081918379e-4
allele num: 6714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.009873e6

VQSLOD
type: SiteQuality
SIO_000300: -4.539e0

MQ
type: SiteQuality
SIO_000300: 3.35e1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.468e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.571e0

GenotypeQuality
all individuals: 530
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8933
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3365
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.241491085899514e-4
allele num: 6170
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.91989e5

VQSLOD
type: SiteQuality
SIO_000300: -4.296e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.345e1

MQ
type: SiteQuality
SIO_000300: 3.01e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 331
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.228514237747788e-5
allele num: 30974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.202e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 3.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.242e0

DP
type: SiteQuality
SIO_000300: 9.66291e5

MQ
type: SiteQuality
SIO_000300: 3.718e1

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.429355281207133e-5
allele num: 29160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.770538243626062e-4
allele num: 5648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

DP
type: SiteQuality
SIO_000300: 9.27695e5

MQ
type: SiteQuality
SIO_000300: 2.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

QD
type: SiteQuality
SIO_000300: 6.75e0

VQSLOD
type: SiteQuality
SIO_000300: -4.792e0

GenotypeQuality
all individuals: 954
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

MQ
type: SiteQuality
SIO_000300: 2.762e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.12312e5

VQSLOD
type: SiteQuality
SIO_000300: -4.969e0

QD
type: SiteQuality
SIO_000300: 1.04e1

GenotypeQuality
all individuals: 2622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.664614482556435e-5
allele num: 27288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.715e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQ
type: SiteQuality
SIO_000300: 2.407e1

DP
type: SiteQuality
SIO_000300: 9.01175e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2949
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.455425017277125e-4
allele num: 5788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.671e0

MQ
type: SiteQuality
SIO_000300: 4.052e1

VQSLOD
type: SiteQuality
SIO_000300: -2.724e0

DP
type: SiteQuality
SIO_000300: 8.99049e5

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.238e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

GenotypeQuality
all individuals: 1297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25268
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.690274162469152e-5
allele num: 59162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.294023e6

MQ
type: SiteQuality
SIO_000300: 3.671e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.324e0

QD
type: SiteQuality
SIO_000300: 1.054e1

MQRankSum
type: SiteQuality
SIO_000300: -1.841e0

GenotypeQuality
all individuals: 1272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.626545217957059e-4
allele num: 6148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.378036009863865e-5
allele num: 59206
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10666
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.36630383341221e-4
allele num: 8452
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.691e0

FS
type: SiteQuality
SIO_000300: 3.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

QD
type: SiteQuality
SIO_000300: 1.792e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

DP
type: SiteQuality
SIO_000300: 2.294745e6

MQ
type: SiteQuality
SIO_000300: 3.486e1

GenotypeQuality
all individuals: 1724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25269
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7460
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183712121212121e-4
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59164
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

FS
type: SiteQuality
SIO_000300: 5.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQ
type: SiteQuality
SIO_000300: 3.484e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.752e0

DP
type: SiteQuality
SIO_000300: 2.29516e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 3990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.9e0

QD
type: SiteQuality
SIO_000300: 4.11e0

FS
type: SiteQuality
SIO_000300: 1.0133e1

DP
type: SiteQuality
SIO_000300: 2.310734e6

MQ
type: SiteQuality
SIO_000300: 4.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 1828
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 25306
bin: 9.75e1
variant carriers: 126

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2198
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2068
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 632
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 205
allele frequency: 2.43063789423761e-2
allele num: 8434
num of homozygotes: 53

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12918
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.218597675290589e-3
allele num: 10668
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.243781094527363e-3
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 1.747e1

MQ
type: SiteQuality
SIO_000300: 3.241e1

DP
type: SiteQuality
SIO_000300: 2.312237e6

FS
type: SiteQuality
SIO_000300: 7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.144e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.442e1

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25289
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.100294527980158e-4
allele num: 12902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.558718861209965e-4
allele num: 8430
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.097232079489e-4
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59174
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.716e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 3.453e0

MQ
type: SiteQuality
SIO_000300: 3.209e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

DP
type: SiteQuality
SIO_000300: 2.314782e6

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25290
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.534554425332027e-4
allele num: 59182
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 9.373828271466067e-5
allele num: 10668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.629726205997392e-4
allele num: 6136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12910
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 3.549e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.98e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

QD
type: SiteQuality
SIO_000300: 1.46e1

FS
type: SiteQuality
SIO_000300: 3.423e0

DP
type: SiteQuality
SIO_000300: 2.316972e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
all individuals: 277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25294
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 2
allele frequency: 1.552553951249806e-4
allele num: 12882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179523472517103e-4
allele num: 8478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

MQ
type: SiteQuality
SIO_000300: 2.836e1

DP
type: SiteQuality
SIO_000300: 2.32147e6

VQSLOD
type: SiteQuality
SIO_000300: -4.819e0

QD
type: SiteQuality
SIO_000300: 6.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 2.194e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25295
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.878287002253945e-4
allele num: 10648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179523472517103e-4
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.559089491736826e-4
allele num: 12828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.320951e6

MQ
type: SiteQuality
SIO_000300: 2.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 8.162000000000001e0

QD
type: SiteQuality
SIO_000300: 4.76e0

VQSLOD
type: SiteQuality
SIO_000300: -4.898e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 862
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3985
bin: 6.75e1
variant carriers: 4

Latino
type: Population
allele count: 18
allele frequency: 1.69683257918552e-3
allele num: 10608
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.304692663582287e-4
allele num: 6052
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.577319587628866e-3
allele num: 12804
num of homozygotes: 9

African
type: Population
allele count: 5
allele frequency: 6.16827041697508e-4
allele num: 8106
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 5.063291139240506e-3
allele num: 790
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 371
allele frequency: 6.355787021174536e-3
allele num: 58372
num of homozygotes: 89

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.231e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.522e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 2.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.518e1

DP
type: SiteQuality
SIO_000300: 2.324099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
all individuals: 4009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.715148188803513e-5
allele num: 58304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179523472517103e-4
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.654e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: -4.563e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

FS
type: SiteQuality
SIO_000300: 2.958e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

DP
type: SiteQuality
SIO_000300: 2.317227e6

GenotypeQuality
all individuals: 1305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11939
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.778469197261979e-5
allele num: 12856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.65e1

DP
type: SiteQuality
SIO_000300: 2.323843e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

FS
type: SiteQuality
SIO_000300: 4.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 3.101e1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.075e0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25315
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.428179636612959e-5
allele num: 58340
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

QD
type: SiteQuality
SIO_000300: 2.151e1

MQ
type: SiteQuality
SIO_000300: 2.768e1

DP
type: SiteQuality
SIO_000300: 2.324614e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.665e0

FS
type: SiteQuality
SIO_000300: 5.511e0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.328830926874709e-4
allele num: 12882
num of homozygotes: 1

African
type: Population
allele count: 2
allele frequency: 2.467308166790032e-4
allele num: 8106
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58328
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.82539084573366e-4
allele num: 10618
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.28e-1

MQ
type: SiteQuality
SIO_000300: 2.67e1

VQSLOD
type: SiteQuality
SIO_000300: -5.599e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 2.325374e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.746e1

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25321
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12878
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.238850346878097e-4
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 2.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.324896e6

VQSLOD
type: SiteQuality
SIO_000300: -4.84e0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 11891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25321
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2258
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180080245456691e-4
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58178
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.324783e6

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: -1.929e0

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

FS
type: SiteQuality
SIO_000300: 3.121e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 4.396e1

GenotypeQuality
all individuals: 330
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 1158
bin: 8.75e1
variant carriers: 39

GenotypeQuality
all individuals: 28344
bin: 9.75e1
variant carriers: 8043

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1606
bin: 9.25e1
variant carriers: 49

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1994
bin: 8.25e1
variant carriers: 39

Other
type: Population
allele count: 83
allele frequency: 1.047979797979798e-1
allele num: 792
num of homozygotes: 22

European (Finnish)
type: Population
allele count: 893
allele frequency: 1.480928689883914e-1
allele num: 6030
num of homozygotes: 223

Latino
type: Population
allele count: 420
allele frequency: 3.959276018099547e-2
allele num: 10608
num of homozygotes: 115

South Asian
type: Population
allele count: 1194
allele frequency: 9.271626028886473e-2
allele num: 12878
num of homozygotes: 388

African
type: Population
allele count: 219
allele frequency: 2.71039603960396e-2
allele num: 8080
num of homozygotes: 63

European (Non-Finnish)
type: Population
allele count: 8040
allele frequency: 1.380826434925978e-1
allele num: 58226
num of homozygotes: 2314

East Asian
type: Population
allele count: 858
allele frequency: 1.012987012987013e-1
allele num: 8470
num of homozygotes: 120

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.677e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

MQ
type: SiteQuality
SIO_000300: 3.108e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.777e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 2.869877e6

QD
type: SiteQuality
SIO_000300: 1.562e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 2134
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25946
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1306
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.825923134890731e-4
allele num: 10616
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58308
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.431166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: -4.282e0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 3.104e1

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.429825764851146e-5
allele num: 58312
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.679e1

VQSLOD
type: SiteQuality
SIO_000300: -3.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.43132e6

MQ
type: SiteQuality
SIO_000300: 2.994e1

GenotypeQuality
all individuals: 4100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25945
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.714442463310931e-5
allele num: 58328
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 2.432007e6

MQ
type: SiteQuality
SIO_000300: 4.15e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

VQSLOD
type: SiteQuality
SIO_000300: -2.479e0

QD
type: SiteQuality
SIO_000300: 2.148e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

GenotypeQuality
all individuals: 2201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.713443679106268e-5
allele num: 58362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.248e0

QD
type: SiteQuality
SIO_000300: 1.254e1

FS
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: -1.322e0

VQSLOD
type: SiteQuality
SIO_000300: -3.83e0

MQ
type: SiteQuality
SIO_000300: 3.314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.119e0

DP
type: SiteQuality
SIO_000300: 2.434139e6

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25942
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.138922196717942e-5
allele num: 58378
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.924e0

VQSLOD
type: SiteQuality
SIO_000300: -3.499e0

MQ
type: SiteQuality
SIO_000300: 3.439e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 2.435567e6

GenotypeQuality
all individuals: 2549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25942
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.42151874882231e-5
allele num: 10614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.62e1

FS
type: SiteQuality
SIO_000300: 2.198e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -4.284e0

DP
type: SiteQuality
SIO_000300: 2.436563e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.324e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.065e0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.42151874882231e-5
allele num: 10614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58422
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.218620521569583e-4
allele num: 8206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.986e0

DP
type: SiteQuality
SIO_000300: 2.436644e6

MQ
type: SiteQuality
SIO_000300: 3.385e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 2.47e0

GenotypeQuality
all individuals: 4147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.42151874882231e-5
allele num: 10614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.423367909349218e-5
allele num: 58422
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.986e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.226e0

DP
type: SiteQuality
SIO_000300: 2.436644e6

MQ
type: SiteQuality
SIO_000300: 3.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
all individuals: 2108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.711683954674609e-5
allele num: 58422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 4.751461988304093e-3
allele num: 8208
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.701e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

MQ
type: SiteQuality
SIO_000300: 3.578e1

VQSLOD
type: SiteQuality
SIO_000300: -1.421e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 2.438904e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.218620521569583e-4
allele num: 8206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

QD
type: SiteQuality
SIO_000300: 1.329e1

DP
type: SiteQuality
SIO_000300: 2.436794e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.61e0

MQ
type: SiteQuality
SIO_000300: 3.689e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.98e-1

GenotypeQuality
all individuals: 2026
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12166
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58422
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

QD
type: SiteQuality
SIO_000300: 1.029e1

VQSLOD
type: SiteQuality
SIO_000300: -6.279e0

FS
type: SiteQuality
SIO_000300: 8.266999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 3.762e1

DP
type: SiteQuality
SIO_000300: 2.436539e6

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.982e0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12160
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.711859764448096e-5
allele num: 58416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 2.436778e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 3.534e1

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25965
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1304
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.218620521569583e-3
allele num: 8206
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 1.2509e2

MQ
type: SiteQuality
SIO_000300: 2.329e1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 2.436458e6

VQSLOD
type: SiteQuality
SIO_000300: -7.729000000000001e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 2.102e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25946
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.77000777000777e-5
allele num: 12870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58414
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.064e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 2.436481e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.494e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

FS
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

MQ
type: SiteQuality
SIO_000300: 3.692e1

GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 415
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 30

GenotypeQuality
all individuals: 2541
bin: 7.75e1
variant carriers: 4

South Asian
type: Population
allele count: 1
allele frequency: 7.7724234416291e-5
allele num: 12866
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.419743782969103e-5
allele num: 10616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 6.163961372508733e-4
allele num: 58404
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.313452617627568e-4
allele num: 6036
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.709819247679531e-3
allele num: 8188
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 2.437054e6

VQSLOD
type: SiteQuality
SIO_000300: 4.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.503e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 2.386e1

FS
type: SiteQuality
SIO_000300: 6.4093e1

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.663898387884709e-4
allele num: 8188
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.7724234416291e-5
allele num: 12866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.13663447709061e-5
allele num: 58404
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 2.386e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.503e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 6.4093e1

VQSLOD
type: SiteQuality
SIO_000300: 4.338e1

DP
type: SiteQuality
SIO_000300: 2.437054e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.712211492363537e-5
allele num: 58404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.338e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 2.386e1

FS
type: SiteQuality
SIO_000300: 6.4093e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.503e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 2.437054e6

GenotypeQuality
all individuals: 1301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.28e0

FS
type: SiteQuality
SIO_000300: 4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 2.435773e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 4.418e1

QD
type: SiteQuality
SIO_000300: 1.22e1

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12105
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.711976991029241e-5
allele num: 58412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.418e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.28e0

FS
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 2.435773e6

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.417969485778867e-5
allele num: 10618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.339e0

QD
type: SiteQuality
SIO_000300: 2.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.279e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 3.685e1

DP
type: SiteQuality
SIO_000300: 2.435155e6

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

GenotypeQuality
all individuals: 2534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.331364625427417e-4
allele num: 12868
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

FS
type: SiteQuality
SIO_000300: 1.507e0

VQSLOD
type: SiteQuality
SIO_000300: -4.909e0

DP
type: SiteQuality
SIO_000300: 2.434262e6

QD
type: SiteQuality
SIO_000300: 9.15e0

MQRankSum
type: SiteQuality
SIO_000300: -4.026e0

MQ
type: SiteQuality
SIO_000300: 3.558e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 25946
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12003
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.29900803023146e-3
allele num: 8468
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58322
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.42151874882231e-5
allele num: 10614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.434419e6

QD
type: SiteQuality
SIO_000300: 1.686e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.436e0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQ
type: SiteQuality
SIO_000300: 3.646e1

GenotypeQuality
all individuals: 2533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10610
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.361832782239018e-4
allele num: 8468
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

DP
type: SiteQuality
SIO_000300: 2.43161e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.865e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 3.193e1

MQ
type: SiteQuality
SIO_000300: 3.45e1

GenotypeQuality
all individuals: 11815
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.531645569620253e-3
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 2.017484868863484e-3
allele num: 5948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.367e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 3.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.514e0

FS
type: SiteQuality
SIO_000300: 1.71116e2

MQRankSum
type: SiteQuality
SIO_000300: -1.538e0

DP
type: SiteQuality
SIO_000300: 2.437938e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 3.476e1

GenotypeQuality
all individuals: 771
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25935
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.154462045977802e-5
allele num: 58202
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.805e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQ
type: SiteQuality
SIO_000300: 3.69e1

DP
type: SiteQuality
SIO_000300: 2.428574e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 7.46e0

GenotypeQuality
all individuals: 2121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25961
bin: 9.75e1
variant carriers: 50

South Asian
type: Population
allele count: 1
allele frequency: 7.77000777000777e-5
allele num: 12870
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.9228738449934e-3
allele num: 10606
num of homozygotes: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.525252525252525e-3
allele num: 792
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.65892501658925e-4
allele num: 6028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 6.014985907747301e-4
allele num: 58188
num of homozygotes: 11

BaseQRankSum
type: SiteQuality
SIO_000300: -8.23e-1

MQ
type: SiteQuality
SIO_000300: 3.673e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.867e1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

DP
type: SiteQuality
SIO_000300: 2.43316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.022e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25961
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1832
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12870
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.412898443291327e-4
allele num: 8094
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.657175183858194e-4
allele num: 10606
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 3.673e1

DP
type: SiteQuality
SIO_000300: 2.43316e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.022e-1

QD
type: SiteQuality
SIO_000300: 1.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.437489257846069e-5
allele num: 58182
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 2.428057e6

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

FS
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

MQ
type: SiteQuality
SIO_000300: 4.869e1

GenotypeQuality
all individuals: 4082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11663
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26004
bin: 9.75e1
variant carriers: 171

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 17
allele frequency: 2.110228401191658e-3
allele num: 8056
num of homozygotes: 7

Latino
type: Population
allele count: 6
allele frequency: 5.659309564233164e-4
allele num: 10602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.659475605708596e-4
allele num: 6026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 196
allele frequency: 3.371057067180351e-3
allele num: 58142
num of homozygotes: 51

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.398601398601399e-3
allele num: 12870
num of homozygotes: 6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 3.682e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 2.44075e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.702e1

VQSLOD
type: SiteQuality
SIO_000300: 1.571e1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

FS
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.217e0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180916391119509e-4
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.631e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQ
type: SiteQuality
SIO_000300: 3.706e1

QD
type: SiteQuality
SIO_000300: 1.312e1

DP
type: SiteQuality
SIO_000300: 2.42607e6

MQRankSum
type: SiteQuality
SIO_000300: -8.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -3.013e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 4091
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11709
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.721288901129166e-5
allele num: 58096
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.48941996514812e-4
allele num: 8034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.62e1

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 2.037e1

FS
type: SiteQuality
SIO_000300: 7.681699999999999e1

MQ
type: SiteQuality
SIO_000300: 2.791e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.302e-1

DP
type: SiteQuality
SIO_000300: 2.425084e6

GenotypeQuality
all individuals: 11681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.488800398208064e-4
allele num: 8036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.443051921222972e-5
allele num: 58088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

MQ
type: SiteQuality
SIO_000300: 3.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e0

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.089e0

FS
type: SiteQuality
SIO_000300: 3.221e0

DP
type: SiteQuality
SIO_000300: 2.424244e6

QD
type: SiteQuality
SIO_000300: 1.518e1

GenotypeQuality
all individuals: 1525
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11586
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.168314784825828e-5
allele num: 58046
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.759e0

DP
type: SiteQuality
SIO_000300: 2.423111e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

QD
type: SiteQuality
SIO_000300: 1.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

FS
type: SiteQuality
SIO_000300: 6.209e0

MQ
type: SiteQuality
SIO_000300: 3.826e1

MQRankSum
type: SiteQuality
SIO_000300: -1.025e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25944
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.170809059257472e-5
allele num: 58018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 1.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: -3.7e0

MQ
type: SiteQuality
SIO_000300: 3.746e1

DP
type: SiteQuality
SIO_000300: 2.421602e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.481e0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.469e0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.246e0

FS
type: SiteQuality
SIO_000300: 3.4963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 2.642e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 2.943e1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.025e-1

DP
type: SiteQuality
SIO_000300: 2.420544e6

GenotypeQuality
all individuals: 4072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25944
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.450774698919907e-5
allele num: 57958
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 2.119e0

QD
type: SiteQuality
SIO_000300: 3.145e1

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQ
type: SiteQuality
SIO_000300: 3.754e1

DP
type: SiteQuality
SIO_000300: 2.419227e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.927e0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.726221301570861e-5
allele num: 57930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 2.418885e6

FS
type: SiteQuality
SIO_000300: 2.853e0

QD
type: SiteQuality
SIO_000300: 1.203e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.021e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.374e0

MQ
type: SiteQuality
SIO_000300: 3.556e1

GenotypeQuality
all individuals: 1533
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 5

African
type: Population
allele count: 455
allele frequency: 5.753667172483561e-2
allele num: 7908
num of homozygotes: 135

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.727056060239715e-5
allele num: 57902
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.262626262626263e-3
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.452830188679245e-3
allele num: 10600
num of homozygotes: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.686e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.128e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.995e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.427e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 2.435061e6

QD
type: SiteQuality
SIO_000300: 1.796e1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.730702665282105e-5
allele num: 57780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.437523593808984e-5
allele num: 10596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.148e1

MQ
type: SiteQuality
SIO_000300: 4.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.686e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

DP
type: SiteQuality
SIO_000300: 2.413359e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.003e0

GenotypeQuality
all individuals: 2528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0